Angela Gomez-Simmonds

Title(s)Assistant Professor, MED: Int Med Infectious Diseases
SchoolSchool of Medicine
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    1. Genomic epidemiology of carbapenem-resistant Enterobacterales at a New York City hospital over a 10-year period reveals complex plasmid-clone dynamics and evidence for frequent horizontal transfer of blaKPC. Genome Res. 2024 Nov 20; 34(11):1895-1907. Gomez-Simmonds A, Annavajhala MK, Seeram D, Hokunson TW, Park H, Uhlemann AC. PMID: 39366703; PMCID: PMC11610580.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Gut colonization with multidrug resistant organisms in the intensive care unit: a systematic review and meta-analysis. Crit Care. 2024 06 28; 28(1):211. Heath MR, Fan W, Leu CS, Gomez-Simmonds A, Lodise T, Freedberg DE. PMID: 38943133; PMCID: PMC11214232.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    3. Timing and clinical risk factors for early acquisition of gut pathogen colonization with multidrug resistant organisms in the intensive care unit. Gut Pathog. 2024 Feb 21; 16(1):10. Shamalov L, Heath M, Lynch E, Green DA, Gomez-Simmonds A, Freedberg DE. PMID: 38383457; PMCID: PMC10880254.
      View in: PubMed   Mentions: 3  
    4. Tradeoff between lag time and growth rate drives the plasmid acquisition cost. Nat Commun. 2023 04 24; 14(1):2343. Ahmad M, Prensky H, Balestrieri J, ElNaggar S, Gomez-Simmonds A, Uhlemann AC, Traxler B, Singh A, Lopatkin AJ. PMID: 37095096; PMCID: PMC10126158.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    5. Impact of a Rapid Molecular Test for Klebsiella pneumoniae Carbapenemase and Ceftazidime-Avibactam Use on Outcomes After Bacteremia Caused by Carbapenem-Resistant Enterobacterales. Clin Infect Dis. 2022 12 19; 75(12):2066-2075. Satlin MJ, Chen L, Gomez-Simmonds A, Marino J, Weston G, Bhowmick T, Seo SK, Sperber SJ, Kim AC, Eilertson B, Derti S, Jenkins SG, Levi MH, Weinstein MP, Tang YW, Hong T, Juretschko S, Hoffman KL, Walsh TJ, Westblade LF, Uhlemann AC, Kreiswirth BN. PMID: 35522019; PMCID: PMC10200298.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    6. Antibiotic-Specific Risk for Community-Acquired Clostridioides difficile Infection in the United States from 2008 to 2020. Antimicrob Agents Chemother. 2022 12 20; 66(12):e0112922. Zhang J, Chen L, Gomez-Simmonds A, Yin MT, Freedberg DE. PMID: 36377887; PMCID: PMC9764966.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    7. Intestinal Dysbiosis and Risk of Posttransplant Clostridioides difficile Infection in a Longitudinal Cohort of Liver Transplant Recipients. mSphere. 2022 Oct 26; 7(5):e0036122. Gomez-Simmonds A, Annavajhala MK, Nunez MP, Macesic N, Park H, Uhlemann AC. PMID: 36135360; PMCID: PMC9599498.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    8. Population structure of blaKPC-harbouring IncN plasmids at a New York City medical centre and evidence for multi-species horizontal transmission. J Antimicrob Chemother. 2022 06 29; 77(7):1873-1882. Gomez-Simmonds A, Annavajhala MK, Tang N, Rozenberg FD, Ahmad M, Park H, Lopatkin AJ, Uhlemann AC. PMID: 35412609; PMCID: PMC9633718.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    9. A Prediction Model Incorporating Peripheral Eosinopenia as a Novel Risk Factor for Death After Hospitalization for Clostridioides difficile Infection. Gastro Hep Adv. 2022; 1(1):38-44. Wang Y, Salmasian H, Schluger A, Gomez-Simmonds A, Choy A, Li J, Axelrad JE, Freedberg DE. PMID: 35974881; PMCID: PMC9377641.
      View in: PubMed   Mentions: 1  
    10. Emergence and expansion of SARS-CoV-2 B.1.526 after identification in New York. Nature. 2021 09; 597(7878):703-708. Annavajhala MK, Mohri H, Wang P, Nair M, Zucker JE, Sheng Z, Gomez-Simmonds A, Kelley AL, Tagliavia M, Huang Y, Bedford T, Ho DD, Uhlemann AC. PMID: 34428777; PMCID: PMC8481122.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansCells
    11. Supervised Machine Learning Approach to Identify Early Predictors of Poor Outcome in Patients with COVID-19 Presenting to a Large Quaternary Care Hospital in New York City. J Clin Med. 2021 Aug 11; 10(16). Zucker J, Gomez-Simmonds A, Purpura LJ, Shoucri S, LaSota E, Morley NE, Sovic BW, Castellon MA, Theodore DA, Bartram LL, Miko BA, Scherer ML, Meyers KA, Turner WC, Kelly M, Pavlicova M, Basaraba CN, Baldwin MR, Brodie D, Burkart KM, Bathon J, Uhlemann AC, Yin MT, Castor D, Sobieszczyk ME. PMID: 34441819; PMCID: PMC8397083.
      View in: PubMed   Mentions: 2  
    12. Emergence and Expansion of the SARS-CoV-2 Variant B.1.526 Identified in New York. medRxiv. 2021 Aug 04. Annavajhala MK, Mohri H, Wang P, Nair M, Zucker JE, Sheng Z, Gomez-Simmonds A, Kelley AL, Tagliavia M, Huang Y, Bedford T, Ho DD, Uhlemann AC. PMID: 33655278; PMCID: PMC7924303.
      View in: PubMed   Mentions: 7  
    13. Characterization of Bacterial and Fungal Infections in Hospitalized Patients With Coronavirus Disease 2019 and Factors Associated With Health Care-Associated Infections. Open Forum Infect Dis. 2021 Jun; 8(6):ofab201. Kubin CJ, McConville TH, Dietz D, Zucker J, May M, Nelson B, Istorico E, Bartram L, Small-Saunders J, Sobieszczyk ME, Gomez-Simmonds A, Uhlemann AC. PMID: 34099978; PMCID: PMC8135866.
      View in: PubMed   Mentions: 64  
    14. Clinical Outcomes Associated With Methylprednisolone in Mechanically Ventilated Patients With COVID-19. Clin Infect Dis. 2021 05 04; 72(9):e367-e372. Nelson BC, Laracy J, Shoucri S, Dietz D, Zucker J, Patel N, Sobieszczyk ME, Kubin CJ, Gomez-Simmonds A. PMID: 32772069; PMCID: PMC7454332.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    15. Conjugation dynamics depend on both the plasmid acquisition cost and the fitness cost. Mol Syst Biol. 2021 03; 17(3):e9913. Prensky H, Gomez-Simmonds A, Uhlemann AC, Lopatkin AJ. PMID: 33646643; PMCID: PMC7919528.
      View in: PubMed   Mentions: 38     Fields:    Translation:Cells
    16. Carbapenemase-producing Enterobacterales causing secondary infections during the COVID-19 crisis at a New York City hospital. J Antimicrob Chemother. 2021 01 19; 76(2):380-384. Gomez-Simmonds A, Annavajhala MK, McConville TH, Dietz DE, Shoucri SM, Laracy JC, Rozenberg FD, Nelson B, Greendyke WG, Furuya EY, Whittier S, Uhlemann AC. PMID: 33202023; PMCID: PMC7717307.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansCells
    17. Does Addition of Intravenous Metronidazole to Oral Vancomycin Improve Outcomes in Clostridioides difficile Infection? Clin Infect Dis. 2020 12 03; 71(9):2414-2420. Wang Y, Schluger A, Li J, Gomez-Simmonds A, Salmasian H, Freedberg DE. PMID: 31714955.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    18. Emergence of Polymyxin Resistance in Clinical Klebsiella pneumoniae Through Diverse Genetic Adaptations: A Genomic, Retrospective Cohort Study. Clin Infect Dis. 2020 05 06; 70(10):2084-2091. Macesic N, Nelson B, Mcconville TH, Giddins MJ, Green DA, Stump S, Gomez-Simmonds A, Annavajhala MK, Uhlemann AC. PMID: 31513705; PMCID: PMC7201408.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    19. Colonizing multidrug-resistant bacteria and the longitudinal evolution of the intestinal microbiome after liver transplantation. Nat Commun. 2019 10 17; 10(1):4715. Annavajhala MK, Gomez-Simmonds A, Macesic N, Sullivan SB, Kress A, Khan SD, Giddins MJ, Stump S, Kim GI, Narain R, Verna EC, Uhlemann AC. PMID: 31624266; PMCID: PMC6797753.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCells
    20. Escherichia coli Harboring mcr-1 in a Cluster of Liver Transplant Recipients: Detection through Active Surveillance and Whole-Genome Sequencing. Antimicrob Agents Chemother. 2019 06; 63(6). Macesic N, Khan S, Giddins MJ, Freedberg DE, Whittier S, Green DA, Furuya EY, Verna EC, Annavajhala MK, Gomez-Simmonds A, Uhlemann AC. PMID: 30962343; PMCID: PMC6535534.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    21. Multidrug-Resistant Enterobacter cloacae Complex Emerging as a Global, Diversifying Threat. Front Microbiol. 2019; 10:44. Annavajhala MK, Gomez-Simmonds A, Uhlemann AC. PMID: 30766518; PMCID: PMC6365427.
      View in: PubMed   Mentions: 137  
    22. Genomic Surveillance Reveals Diversity of Multidrug-Resistant Organism Colonization and Infection: A Prospective Cohort Study in Liver Transplant Recipients. Clin Infect Dis. 2018 08 31; 67(6):905-912. Macesic N, Gomez-Simmonds A, Sullivan SB, Giddins MJ, Ferguson SA, Korakavi G, Leeds D, Park S, Shim K, Sowash MG, Hofbauer M, Finkel R, Hu Y, West J, Toussaint NC, Greendyke WG, Miko BA, Pereira MR, Whittier S, Verna EC, Uhlemann AC. PMID: 29718144; PMCID: PMC6117442.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCellsPHPublic Health
    23. Clonal Background, Resistance Gene Profile, and Porin Gene Mutations Modulate In Vitro Susceptibility to Imipenem-Relebactam in Diverse Enterobacteriaceae. Antimicrob Agents Chemother. 2018 08; 62(8). Gomez-Simmonds A, Stump S, Giddins MJ, Annavajhala MK, Uhlemann AC. PMID: 29891602; PMCID: PMC6105792.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    24. Genomic and Geographic Context for the Evolution of High-Risk Carbapenem-Resistant Enterobacter cloacae Complex Clones ST171 and ST78. mBio. 2018 05 29; 9(3). Gomez-Simmonds A, Annavajhala MK, Wang Z, Macesic N, Hu Y, Giddins MJ, O'Malley A, Toussaint NC, Whittier S, Torres VJ, Uhlemann AC. PMID: 29844109; PMCID: PMC5974468.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCells
    25. Successive Emergence of Ceftazidime-Avibactam Resistance through Distinct Genomic Adaptations in blaKPC-2-Harboring Klebsiella pneumoniae Sequence Type 307 Isolates. Antimicrob Agents Chemother. 2018 03; 62(3). Giddins MJ, Macesic N, Annavajhala MK, Stump S, Khan S, McConville TH, Mehta M, Gomez-Simmonds A, Uhlemann AC. PMID: 29263067; PMCID: PMC5826117.
      View in: PubMed   Mentions: 110     Fields:    Translation:HumansCells
    26. Carbapenem-resistant Enterobacteriaceae colonization (CRE) and subsequent risk of infection and 90-day mortality in critically ill patients, an observational study. PLoS One. 2017; 12(10):e0186195. McConville TH, Sullivan SB, Gomez-Simmonds A, Whittier S, Uhlemann AC. PMID: 29023567; PMCID: PMC5638409.
      View in: PubMed   Mentions: 78     Fields:    Translation:HumansCells
    27. Reply to Aitken et al., "Should Piperacillin-Tazobactam Be Used as Definitive Therapy against Enterobacteriaceae Harboring Inducible AmpC β-Lactamases?" Antimicrob Agents Chemother. 2017 09; 61(9). Cheng L, Nelson BC, Mehta M, Shi Q, Gomez-Simmonds A, Uhlemann AC. PMID: 28839083; PMCID: PMC5571316.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    28. Piperacillin-Tazobactam versus Other Antibacterial Agents for Treatment of Bloodstream Infections Due to AmpC β-Lactamase-Producing Enterobacteriaceae. Antimicrob Agents Chemother. 2017 06; 61(6). Cheng L, Nelson BC, Mehta M, Seval N, Park S, Giddins MJ, Shi Q, Whittier S, Gomez-Simmonds A, Uhlemann AC. PMID: 28320724; PMCID: PMC5444164.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansCells
    29. Detection of mcr-1-Carrying Escherichia coli Causing Bloodstream Infection in a New York City Hospital: Avian Origins, Human Concerns? Open Forum Infect Dis. 2017; 4(3):ofx115. Macesic N, Green D, Wang Z, Sullivan SB, Shim K, Park S, Whittier S, Furuya EY, Gomez-Simmonds A, Uhlemann AC. PMID: 28721352; PMCID: PMC5508776.
      View in: PubMed   Mentions: 14  
    30. Multicenter Clinical and Molecular Epidemiological Analysis of Bacteremia Due to Carbapenem-Resistant Enterobacteriaceae (CRE) in the CRE Epicenter of the United States. Antimicrob Agents Chemother. 2017 04; 61(4). Satlin MJ, Chen L, Patel G, Gomez-Simmonds A, Weston G, Kim AC, Seo SK, Rosenthal ME, Sperber SJ, Jenkins SG, Hamula CL, Uhlemann AC, Levi MH, Fries BC, Tang YW, Juretschko S, Rojtman AD, Hong T, Mathema B, Jacobs MR, Walsh TJ, Bonomo RA, Kreiswirth BN. PMID: 28167547; PMCID: PMC5365653.
      View in: PubMed   Mentions: 129     Fields:    Translation:HumansCells
    31. Clinical Implications of Genomic Adaptation and Evolution of Carbapenem-Resistant Klebsiella pneumoniae. J Infect Dis. 2017 Feb 15; 215(suppl_1):S18-S27. Gomez-Simmonds A, Uhlemann AC. PMID: 28375514; PMCID: PMC5853309.
      View in: PubMed   Mentions: 65     Fields:    Translation:HumansAnimalsCells
    32. Combination Regimens for Treatment of Carbapenem-Resistant Klebsiella pneumoniae Bloodstream Infections. Antimicrob Agents Chemother. 2016 06; 60(6):3601-7. Gomez-Simmonds A, Nelson B, Eiras DP, Loo A, Jenkins SG, Whittier S, Calfee DP, Satlin MJ, Kubin CJ, Furuya EY. PMID: 27044555; PMCID: PMC4879408.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansCells
    33. Evidence from a New York City hospital of rising incidence of genetically diverse carbapenem-resistant Enterobacter cloacae and dominance of ST171, 2007-14. J Antimicrob Chemother. 2016 08; 71(8):2351-3. Gomez-Simmonds A, Hu Y, Sullivan SB, Wang Z, Whittier S, Uhlemann AC. PMID: 27118776; PMCID: PMC4954924.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    34. Clinical outcomes associated with polymyxin B dose in patients with bloodstream infections due to carbapenem-resistant Gram-negative rods. Antimicrob Agents Chemother. 2015 Nov; 59(11):7000-6. Nelson BC, Eiras DP, Gomez-Simmonds A, Loo AS, Satlin MJ, Jenkins SG, Whittier S, Calfee DP, Furuya EY, Kubin CJ. PMID: 26324272; PMCID: PMC4604419.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansCells
    35. Population Structure of Klebsiella pneumoniae Causing Bloodstream Infections at a New York City Tertiary Care Hospital: Diversification of Multidrug-Resistant Isolates. J Clin Microbiol. 2015 Jul; 53(7):2060-7. Gomez-Simmonds A, Greenman M, Sullivan SB, Tanner JP, Sowash MG, Whittier S, Uhlemann AC. PMID: 25878348; PMCID: PMC4473223.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    36. Comparison of 3 severity criteria for Clostridium difficile infection. Infect Control Hosp Epidemiol. 2014 Feb; 35(2):196-9. Gomez-Simmonds A, Kubin CJ, Furuya EY. PMID: 24442086; PMCID: PMC4791954.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
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