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Bart C Weimer

TitleMISC TITLES-SINGLE
InstitutionUniversity of California Davis
Address
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Lawton SJ, Weis AM, Byrne BA, Fritz H, Taff CC, Townsend AK, Weimer B, Mete A, Wheeler S, Boyce WM. Comparative analysis of Campylobacter isolates from wild birds and chickens using MALDI-TOF MS, biochemical testing, and DNA sequencing. J Vet Diagn Invest. 2018 May; 30(3):354-361. PMID: 29528812.
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    2. Chen P, Reiter T, Huang B, Kong N, Weimer B. Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection. Pathogens. 2017 Dec 19; 6(4). PMID: 29257110.
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    3. Borras E, Aksenov AA, Baird M, Novick B, Schivo M, Zamuruyev KO, Pasamontes A, Parry C, Foutouhi S, Venn-Watson S, Weimer B, Davis CE. Exhaled breath condensate methods adapted from human studies using longitudinal metabolomics for predicting early health alterations in dolphins. Anal Bioanal Chem. 2017 Nov; 409(28):6523-6536. PMID: 29063162.
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    4. Arabyan N, Huang BC, Weimer B. Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors. Genome Announc. 2017 Aug 03; 5(31). PMID: 28774970.
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    5. Kong N, Davis M, Arabyan N, Huang BC, Weis AM, Chen P, Thao K, Ng W, Chin N, Foutouhi S, Foutouhi A, Kaufman J, Xie Y, Storey DB, Weimer B. Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project. Genome Announc. 2017 Jul 13; 5(28). PMID: 28705963.
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    6. Weimer B. 100K Pathogen Genome Project. Genome Announc. 2017 Jul 13; 5(28). PMID: 28705971.
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    7. Stevens JR, Jones TR, Lefevre M, Ganesan B, Weimer B. SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree. Comput Struct Biotechnol J. 2017; 15:372-378. PMID: 28748045.
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    8. Aksenov AA, Zamuruyev KO, Pasamontes A, Brown JF, Schivo M, Foutouhi S, Weimer B, Kenyon NJ, Davis CE. Analytical methodologies for broad metabolite coverage of exhaled breath condensate. J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Sep 01; 1061-1062:17-25. PMID: 28697414.
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    9. Arabyan N, Huang BC, Weimer B. Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants. Genome Announc. 2017 Jun 08; 5(23). PMID: 28596411.
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    10. Emond-Rheault JG, Jeukens J, Freschi L, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Colavecchio A, Barrere V, Cadieux B, Arya G, Bekal S, Berry C, Burnett E, Cavestri C, Chapin TK, Crouse A, Daigle F, Danyluk MD, Delaquis P, Dewar K, Doualla-Bell F, Fliss I, Fong K, Fournier E, Franz E, Garduno R, Gill A, Gruenheid S, Harris L, Huang CB, Huang H, Johnson R, Joly Y, Kerhoas M, Kong N, Lapointe G, Larivière L, Loignon S, Malo D, Moineau S, Mottawea W, Mukhopadhyay K, Nadon C, Nash J, Ngueng Feze I, Ogunremi D, Perets A, Pilar AV, Reimer AR, Robertson J, Rohde J, Sanderson KE, Song L, Stephan R, Tamber S, Thomassin P, Tremblay D, Usongo V, Vincent C, Wang S, Weadge JT, Wiedmann M, Wijnands L, Wilson ED, Wittum T, Yoshida C, Youfsi K, Zhu L, Weimer B, Goodridge L, Levesque RC. A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. Front Microbiol. 2017; 8:996. PMID: 28626454.
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    11. Arabyan N, Huang BC, Weimer B. Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains. Genome Announc. 2017 May 18; 5(20). PMID: 28522713.
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    12. Arabyan N, Weis AM, Huang BC, Weimer B. Implication of Sialidases in Salmonella Infection: Genome Release of Sialidase Knockout Strains from Salmonella enterica Serovar Typhimurium LT2. Genome Announc. 2017 May 11; 5(19). PMID: 28495784.
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    13. Weis AM, Gilpin B, Huang BC, Kong N, Chen P, Weimer B. Shigella Draft Genome Sequences: Resources for Food Safety and Public Health. Genome Announc. 2017 Apr 20; 5(16). PMID: 28428292.
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    14. Weis AM, Clothier KA, Huang BC, Kong N, Weimer B. Draft Genome Sequence of Multidrug-Resistant Abortive Campylobacter jejuni from Northern California. Genome Announc. 2017 Apr 13; 5(15). PMID: 28408683.
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    15. Kong N, Ng W, Thao K, Agulto R, Weis A, Kim KS, Korlach J, Hickey L, Kelly L, Lappin S, Weimer B. Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing. Stand Genomic Sci. 2017; 12:27. PMID: 28344744.
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    16. Draper JL, Hansen LM, Bernick DL, Abedrabbo S, Underwood JG, Kong N, Huang BC, Weis AM, Weimer B, van Vliet AH, Pourmand N, Solnick JV, Karplus K, Ottemann KM. Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains. MBio. 2017 02 21; 8(1). PMID: 28223462.
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    17. Chen P, Kong N, Huang B, Thao K, Ng W, Storey DB, Arabyan N, Foutouhi A, Foutouhi S, Weimer B. 100K Pathogen Genome Project: 306 Listeria Draft Genome Sequences for Food Safety and Public Health. Genome Announc. 2017 Feb 09; 5(6). PMID: 28183778.
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    18. Chen P, den Bakker HC, Korlach J, Kong N, Storey DB, Paxinos EE, Ashby M, Clark T, Luong K, Wiedmann M, Weimer B. Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes. Appl Environ Microbiol. 2017 02 01; 83(3). PMID: 27836852.
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    19. Weis AM, Huang BC, Storey DB, Kong N, Chen P, Arabyan N, Gilpin B, Mason C, Townsend AK, Smith WA, Byrne BA, Taff CC, Weimer B. Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project. Genome Announc. 2017 Jan 05; 5(1). PMID: 28057746.
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    20. Zamuruyev KO, Aksenov AA, Pasamontes A, Brown JF, Pettit DR, Foutouhi S, Weimer B, Schivo M, Kenyon NJ, Delplanque JP, Davis CE. Human breath metabolomics using an optimized non-invasive exhaled breath condensate sampler. J Breath Res. 2016 12 22; 11(1):016001. PMID: 28004639.
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    21. Weis AM, Clothier KA, Huang BC, Kong N, Weimer B. Draft Genome Sequences of Campylobacter jejuni Strains That Cause Abortion in Livestock. Genome Announc. 2016 Dec 01; 4(6). PMID: 27908990.
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    22. Weis AM, Storey DB, Taff CC, Townsend AK, Huang BC, Kong NT, Clothier KA, Spinner A, Byrne BA, Weimer B. Genomic Comparison of Campylobacter spp. and Their Potential for Zoonotic Transmission between Birds, Primates, and Livestock. Appl Environ Microbiol. 2016 12 15; 82(24):7165-7175. PMID: 27736787.
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    23. Hu Y, Yang X, Li J, Lv N, Liu F, Wu J, Lin IY, Wu N, Weimer B, Gao GF, Liu Y, Zhu B. The Bacterial Mobile Resistome Transfer Network Connecting the Animal and Human Microbiomes. Appl Environ Microbiol. 2016 11 15; 82(22):6672-6681. PMID: 27613679.
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    24. Park D, Arabyan N, Williams CC, Song T, Mitra A, Weimer B, Maverakis E, Lebrilla CB. Salmonella Typhimurium Enzymatically Landscapes the Host Intestinal Epithelial Cell (IEC) Surface Glycome to Increase Invasion. Mol Cell Proteomics. 2016 Dec; 15(12):3653-3664. PMID: 27754876.
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    25. Zamuruyev KO, Aksenov AA, Baird M, Pasamontes A, Parry C, Foutouhi S, Venn-Watson S, Weimer B, Delplanque JP, Davis CE. Enhanced non-invasive respiratory sampling from bottlenose dolphins for breath metabolomics measurements. J Breath Res. 2016 09 30; 10(4):046005. PMID: 27689905.
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    26. Taff CC, Weis AM, Wheeler S, Hinton MG, Weimer B, Barker CM, Jones M, Logsdon R, Smith WA, Boyce WM, Townsend AK. Influence of Host Ecology and Behavior on Campylobacter jejuni Prevalence and Environmental Contamination Risk in a Synanthropic Wild Bird Species. Appl Environ Microbiol. 2016 08 01; 82(15):4811-20. PMID: 27260356.
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    27. Arabyan N, Park D, Foutouhi S, Weis AM, Huang BC, Williams CC, Desai P, Shah J, Jeannotte R, Kong N, Lebrilla CB, Weimer B. Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. Sci Rep. 2016 07 08; 6:29525. PMID: 27389966.
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    28. Lüdeke CH, Kong N, Weimer B, Fischer M, Jones JL. Complete Genome Sequences of a Clinical Isolate and an Environmental Isolate of Vibrio parahaemolyticus. Genome Announc. 2015 Mar 26; 3(2). PMID: 25814612; PMCID: PMC4384152.
    29. Dhanasekaran AR, Pearson JL, Ganesan B, Weimer B. Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction. BMC Bioinformatics. 2015 Feb 25; 16:62. PMID: 25887958; PMCID: PMC4347650.
    30. Wende AR, O'Neill BT, Bugger H, Riehle C, Tuinei J, Buchanan J, Tsushima K, Wang L, Caro P, Guo A, Sloan C, Kim BJ, Wang X, Pereira RO, McCrory MA, Nye BG, Benavides GA, Darley-Usmar VM, Shioi T, Weimer B, Abel ED. Enhanced cardiac Akt/protein kinase B signaling contributes to pathological cardiac hypertrophy in part by impairing mitochondrial function via transcriptional repression of mitochondrion-targeted nuclear genes. Mol Cell Biol. 2015 Mar; 35(5):831-46. PMID: 25535334; PMCID: PMC4323486.
    31. Worden N, Wilkop TE, Esteve VE, Jeannotte R, Lathe R, Vernhettes S, Weimer B, Hicks G, Alonso J, Labavitch J, Persson S, Ehrhardt D, Drakakaki G. CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1. Plant Physiol. 2015 Feb; 167(2):381-93. PMID: 25535279; PMCID: PMC4326758.
    32. Ferreyra JA, Wu KJ, Hryckowian AJ, Bouley DM, Weimer B, Sonnenburg JL. Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance. Cell Host Microbe. 2014 Dec 10; 16(6):770-7. PMID: 25498344; PMCID: PMC4859344.
    33. Shah J, Desai PT, Weimer B. Genetic mechanisms underlying the pathogenicity of cold-stressed Salmonella enterica serovar typhimurium in cultured intestinal epithelial cells. Appl Environ Microbiol. 2014 Nov; 80(22):6943-53. PMID: 25192993; PMCID: PMC4249018.
    34. Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer B, Wiedmann M, Weinstock GM, Fields PI, McClelland M. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerg Infect Dis. 2014 Sep; 20(9):1481-9. PMID: 25147968; PMCID: PMC4178404.
    35. Kol A, Foutouhi S, Walker NJ, Kong NT, Weimer B, Borjesson DL. Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. Stem Cells Dev. 2014 Aug 15; 23(16):1831-43. PMID: 24803072; PMCID: PMC4120524.
    36. Chen P, Jeannotte R, Weimer B. Exploring bacterial epigenomics in the next-generation sequencing era: a new approach for an emerging frontier. Trends Microbiol. 2014 May; 22(5):292-300. PMID: 24725482.
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    37. He X, Mishchuk DO, Shah J, Weimer B, Slupsky CM. Cross-talk between E. coli strains and a human colorectal adenocarcinoma-derived cell line. Sci Rep. 2013 Dec 04; 3:3416. PMID: 24301462; PMCID: PMC3849634.
    38. Shah J, Desai PT, Chen D, Stevens JR, Weimer B. Preadaptation to cold stress in Salmonella enterica serovar Typhimurium increases survival during subsequent acid stress exposure. Appl Environ Microbiol. 2013 Dec; 79(23):7281-9. PMID: 24056458; PMCID: PMC3837722.
    39. Ng KM, Ferreyra JA, Higginbottom SK, Lynch JB, Kashyap PC, Gopinath S, Naidu N, Choudhury B, Weimer B, Monack DM, Sonnenburg JL. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature. 2013 Oct 03; 502(7469):96-9. PMID: 23995682; PMCID: PMC3825626.
    40. Maga EA, Weimer B, Murray JD. Dissecting the role of milk components on gut microbiota composition. Gut Microbes. 2013 Mar-Apr; 4(2):136-9. PMID: 23235404; PMCID: PMC3595073.
    41. Maga EA, Desai PT, Weimer B, Dao N, Kültz D, Murray JD. Consumption of lysozyme-rich milk can alter microbial fecal populations. Appl Environ Microbiol. 2012 Sep; 78(17):6153-60. PMID: 22752159; PMCID: PMC3416601.
    42. Heithoff DM, Shimp WR, House JK, Xie Y, Weimer B, Sinsheimer RL, Mahan MJ. Intraspecies variation in the emergence of hyperinfectious bacterial strains in nature. PLoS Pathog. 2012; 8(4):e1002647. PMID: 22511871; PMCID: PMC3325197.
    43. Barboza M, Pinzon J, Wickramasinghe S, Froehlich JW, Moeller I, Smilowitz JT, Ruhaak LR, Huang J, Lönnerdal B, German JB, Medrano JF, Weimer B, Lebrilla CB. Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions. Mol Cell Proteomics. 2012 Jun; 11(6):M111.015248. PMID: 22261723; PMCID: PMC3433903.
    44. Marcobal A, Barboza M, Sonnenburg ED, Pudlo N, Martens EC, Desai P, Lebrilla CB, Weimer B, Mills DA, German JB, Sonnenburg JL. Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways. Cell Host Microbe. 2011 Nov 17; 10(5):507-14. PMID: 22036470; PMCID: PMC3227561.
    45. Wang J, Zhao B, Zhang W, Wu X, Wang R, Huang Y, Chen D, Park K, Weimer B, Shen Y. Mycoepoxydiene, a fungal polyketide, induces cell cycle arrest at the G2/M phase and apoptosis in HeLa cells. Bioorg Med Chem Lett. 2010 Dec 01; 20(23):7054-8. PMID: 20970330.
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    46. Parnell JJ, Rompato G, Latta LC, Pfrender ME, Van Nostrand JD, He Z, Zhou J, Andersen G, Champine P, Ganesan B, Weimer B. Functional biogeography as evidence of gene transfer in hypersaline microbial communities. PLoS One. 2010 Sep 23; 5(9):e12919. PMID: 20957119; PMCID: PMC2950788.
    47. LoCascio RG, Desai P, Sela DA, Weimer B, Mills DA. Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization. Appl Environ Microbiol. 2010 Nov; 76(22):7373-81. PMID: 20802066; PMCID: PMC2976205.
    48. Bugger H, Chen D, Riehle C, Soto J, Theobald HA, Hu XX, Ganesan B, Weimer B, Abel ED. Tissue-specific remodeling of the mitochondrial proteome in type 1 diabetic akita mice. Diabetes. 2009 Sep; 58(9):1986-97. PMID: 19542201; PMCID: PMC2731527.
    49. Parnell JJ, Crowl TA, Weimer B, Pfrender ME. Biodiversity in microbial communities: system scale patterns and mechanisms. Mol Ecol. 2009 Apr; 18(7):1455-62. PMID: 19298265.
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    50. Zhan Y, Du X, Chen H, Liu J, Zhao B, Huang D, Li G, Xu Q, Zhang M, Weimer B, Chen D, Cheng Z, Zhang L, Li Q, Li S, Zheng Z, Song S, Huang Y, Ye Z, Su W, Lin SC, Shen Y, Wu Q. Cytosporone B is an agonist for nuclear orphan receptor Nur77. Nat Chem Biol. 2008 Sep; 4(9):548-56. PMID: 18690216.
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    51. Pate BJ, White KL, Chen D, Aston KI, Sessions BR, Bunch TD, Weimer B. A novel approach to identify bovine sperm membrane proteins that interact with receptors on the vitelline membrane of bovine oocytes. Mol Reprod Dev. 2008 Apr; 75(4):641-9. PMID: 17886263.
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    52. Desai PT, Walsh MK, Weimer B. Solid-phase capture of pathogenic bacteria by using gangliosides and detection with real-time PCR. Appl Environ Microbiol. 2008 Apr; 74(7):2254-8. PMID: 18263751; PMCID: PMC2292596.
    53. Champine PJ, Michaelson J, Weimer B, Welch DR, DeWald DB. Microarray analysis reveals potential mechanisms of BRMS1-mediated metastasis suppression. Clin Exp Metastasis. 2007; 24(7):551-65. PMID: 17896182; PMCID: PMC2214901.
    54. Pate BJ, White KL, Winger QA, Rickords LF, Aston KI, Sessons BR, Li GP, Campbell KD, Weimer B, Bunch TD. Specific integrin subunits in bovine oocytes, including novel sequences for alpha 6 and beta 3 subunits. Mol Reprod Dev. 2007 May; 74(5):600-7. PMID: 17039534.
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    55. Ganesan B, Stuart MR, Weimer B. Carbohydrate starvation causes a metabolically active but nonculturable state in Lactococcus lactis. Appl Environ Microbiol. 2007 Apr; 73(8):2498-512. PMID: 17293521; PMCID: PMC1855592.
    56. Liang Y, Gardner DR, Miller CD, Chen D, Anderson AJ, Weimer B, Sims RC. Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. Appl Environ Microbiol. 2006 Dec; 72(12):7821-8. PMID: 17041157; PMCID: PMC1694249.
    57. Ganesan B, Dobrowolski P, Weimer B. Identification of the leucine-to-2-methylbutyric acid catabolic pathway of Lactococcus lactis. Appl Environ Microbiol. 2006 Jun; 72(6):4264-73. PMID: 16751541; PMCID: PMC1489675.
    58. Ganesan B, Seefeldt K, Weimer B. Fatty acid production from amino acids and alpha-keto acids by Brevibacterium linens BL2. Appl Environ Microbiol. 2004 Nov; 70(11):6385-93. PMID: 15528496; PMCID: PMC525268.
    59. Xie Y, Chou LS, Cutler A, Weimer B. DNA Macroarray profiling of Lactococcus lactis subsp. lactis IL1403 gene expression during environmental stresses. Appl Environ Microbiol. 2004 Nov; 70(11):6738-47. PMID: 15528540; PMCID: PMC525116.
    60. Ganesan B, Weimer B. Role of aminotransferase IlvE in production of branched-chain fatty acids by Lactococcus lactis subsp. lactis. Appl Environ Microbiol. 2004 Jan; 70(1):638-41. PMID: 14711703; PMCID: PMC321303.
    61. Klaenhammer T, Altermann E, Arigoni F, Bolotin A, Breidt F, Broadbent J, Cano R, Chaillou S, Deutscher J, Gasson M, van de Guchte M, Guzzo J, Hartke A, Hawkins T, Hols P, Hutkins R, Kleerebezem M, Kok J, Kuipers O, Lubbers M, Maguin E, McKay L, Mills D, Nauta A, Overbeek R, Pel H, Pridmore D, Saier M, van Sinderen D, Sorokin A, Steele J, O'Sullivan D, de Vos W, Weimer B, Zagorec M, Siezen R. Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek. 2002 Aug; 82(1-4):29-58. PMID: 12369195.
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