Erkin Seker

Title(s)Professor, Electrical and Computer Engineering
SchoolEngineering
Address3177 Kemper Hall
CA 95616
Phone530-752-7300
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    Collapse Research 
    Collapse Research Activities and Funding
    Neuronal Contribution to the Propagation of Inflammation in the Central Nervous System
    NIH R03NS118156Aug 1, 2020 - Jul 31, 2022
    Role: Principal Investigator
    A Microfabricated Model of Enteric Epithelium-Neuron Interaction for Studying the Influence of Bacterial Metabolites
    NIH R21AT010933Apr 1, 2020 - Mar 31, 2022
    Role: Principal Investigator
    Next Generation Neural Interfaces Based on Axonal Confinement in Micro-Channel Electrode Arrays
    NIH R21EB024635Apr 1, 2018 - Jan 31, 2022
    Role: Principal Investigator

    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Primary cortical cell tri-culture to study effects of amyloid-β on microglia function and neuroinflammatory response. J Alzheimers Dis. 2024 Nov 05; 13872877241291142. Kim H, Le B, Goshi N, Zhu K, Grodzki AC, Lein PJ, Zhao M, Seker E. PMID: 39501607.
      View in: PubMed   Mentions:    Fields:    
    2. The Influence of the Mechanical Compliance of a Substrate on the Morphology of Nanoporous Gold Thin Films. Nanomaterials (Basel). 2024 Apr 25; 14(9). Shahriar S, Somayajula K, Winkeljohn C, Mason JK, Seker E. PMID: 38727352; PMCID: PMC11085319.
      View in: PubMed   Mentions:
    3. Rat primary cortical cell tri-culture to study effects of amyloid-beta on microglia function. bioRxiv. 2024 Mar 17. Kim H, Le B, Goshi N, Zhu K, Grodzki AC, Lein PJ, Zhao M, Seker E. PMID: 38558989; PMCID: PMC10979983.
      View in: PubMed   Mentions:
    4. Microfluidic compartmentalization of rat vagal afferent neurons to model gut-brain axis. Bioelectron Med. 2024 Feb 21; 10(1):3. Girardi G, Zumpano D, Raybould H, Seker E. PMID: 38378575; PMCID: PMC10880301.
      View in: PubMed   Mentions:
    5. Cultured Vagal Afferent Neurons as Sensors for Intestinal Effector Molecules. Biosensors (Basel). 2023 May 31; 13(6). Girardi G, Zumpano D, Goshi N, Raybould H, Seker E. PMID: 37366967; PMCID: PMC10295822.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    6. Electrophysiological Activity of Primary Cortical Neuron-Glia Mixed Cultures. Cells. 2023 03 06; 12(5). Goshi N, Kim H, Girardi G, Gardner A, Seker E. PMID: 36899957; PMCID: PMC10001406.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    7. Experiential Learning in a Biomedical Device Engineering Course: Proposal Development and Raw Research Data-Based Assignments. Biomed Eng Educ. 2022 Dec 07; 1-7. Goshi N, Girardi G, Kim H, Seker E. PMID: 36531592; PMCID: PMC9734624.
      View in: PubMed   Mentions:
    8. Influence of microchannel geometry on device performance and electrophysiological recording fidelity during long-term studies of connected neural populations. Lab Chip. 2022 10 11; 22(20):3961-3975. Goshi N, Girardi G, da Costa Souza F, Gardner A, Lein PJ, Seker E. PMID: 36111641; PMCID: PMC9639432.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    9. Primary Cortical Cell Tri-Culture-Based Screening of Neuroinflammatory Response in Toll-like Receptor Activation. Biomedicines. 2022 Aug 29; 10(9). Goshi N, Kim H, Seker E. PMID: 36140221; PMCID: PMC9495748.
      View in: PubMed   Mentions: 2  
    10. Correction to: A primary neural cell culture model to study neuron, astrocyte, and microglia interactions in neuroinflammation. J Neuroinflammation. 2022 Feb 12; 19(1):49. Goshi N, Morgan RK, Lein PJ, Seker E. PMID: 35151333; PMCID: PMC8840776.
      View in: PubMed   Mentions: 3     Fields:    
    11. Chemically-Gated and Sustained Molecular Transport through Nanoporous Gold Thin Films in Biofouling Conditions. Nanomaterials (Basel). 2021 Feb 16; 11(2). Palanisamy B, Goshi N, Seker E. PMID: 33669404; PMCID: PMC7920421.
      View in: PubMed   Mentions: 1  
    12. Interplay of Effective Surface Area, Mass Transport, and Electrochemical Features in Nanoporous Nucleic Acid Sensors. Anal Chem. 2020 08 04; 92(15):10751-10758. Veselinovic J, AlMashtoub S, Nagella S, Seker E. PMID: 32600033; PMCID: PMC7429308.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    13. A primary neural cell culture model to study neuron, astrocyte, and microglia interactions in neuroinflammation. J Neuroinflammation. 2020 May 11; 17(1):155. Goshi N, Morgan RK, Lein PJ, Seker E. PMID: 32393376; PMCID: PMC7216677.
      View in: PubMed   Mentions: 100     Fields:    Translation:AnimalsCells
    14. Anomalous Trends in Nucleic Acid-Based Electrochemical Biosensors with Nanoporous Gold Electrodes. Anal Chem. 2019 09 17; 91(18):11923-11931. Veselinovic J, Almashtoub S, Seker E. PMID: 31429540; PMCID: PMC6751010.
      View in: PubMed   Mentions: 7     Fields:    
    15. Two-tiered electrical detection, purification, and identification of nucleic acids in complex media. Electrochimica Acta. 2019 Aug 1; 313:116-121. Veselinovic VJ, Alangari AM, Li LY, Matharu MZ, Artés AJ, Seker SE, Hihath HJ. .
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    16. An electrically-controlled programmable microfluidic concentration waveform generator. J Biol Eng. 2018; 12:31. Garrison J, Li Z, Palanisamy B, Wang L, Seker E. PMID: 30564283; PMCID: PMC6295081.
      View in: PubMed   Mentions: 4  
    17. Voltage-Gated Closed-Loop Control of Small-Molecule Release from Alumina-Coated Nanoporous Gold Thin Film Electrodes. Advanced Functional Materials. 2018 Jul 1; 28(29):1801292. Li LZ, Polat PO, Seker SE. .
      View in: Publisher Site   Mentions:
    18. A Microfluidic Platform to Study Astrocyte Adhesion on Nanoporous Gold Thin Films. Nanomaterials (Basel). 2018 Jun 21; 8(7). Hampe AE, Li Z, Sethi S, Lein PJ, Seker E. PMID: 29933551; PMCID: PMC6070884.
      View in: PubMed   Mentions: 2  
    19. Electrically Guided DNA Immobilization and Multiplexed DNA Detection with Nanoporous Gold Electrodes. Nanomaterials (Basel). 2018 May 21; 8(5). Veselinovic J, Li Z, Daggumati P, Seker E. PMID: 29883441; PMCID: PMC5977365.
      View in: PubMed   Mentions: 7  
    20. Multifunctional Neural Interfaces for Closed-Loop Control of Neural Activity. Advanced Functional Materials. 2018 Mar 1; 28(12):1703523. Chapman CC, Goshi GN, Seker SE. .
      View in: Publisher Site   Mentions:
    21. Nanoporous metals by alloy corrosion: Bioanalytical and biomedical applications. MRS Bull. 2018 Jan; 43(1):49-56. Seker E, Shih WC, Stine KJ. PMID: 32684663; PMCID: PMC7367097.
      View in: PubMed   Mentions: 16  
    22. Engineering the interface between lipid membranes and nanoporous gold: A study by quartz crystal microbalance with dissipation monitoring. Biointerphases. 2018 01 05; 13(1):011002. Losada-Pérez P, Polat O, Parikh AN, Seker E, Renner FU. PMID: 29304551.
      View in: PubMed   Mentions: 5     Fields:    
    23. Configurable microfluidic platform for investigating therapeutic delivery from biomedical device coatings. Lab Chip. 2017 09 26; 17(19):3331-3337. Li Z, Seker E. PMID: 28868535.
      View in: PubMed   Mentions: 5     Fields:    
    24. Nanostructure Introduces Artifacts in Quantitative Immunofluorescence by Influencing Fluorophore Intensity. Sci Rep. 2017 03 27; 7(1):427. Chapman CA, Zhu X, Chen H, Yanik AA, Lein PJ, Seker E. PMID: 28348397; PMCID: PMC5428417.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    25. Nanoporous-Gold-Based Electrode Morphology Libraries for Investigating Structure-Property Relationships in Nucleic Acid Based Electrochemical Biosensors. ACS Appl Mater Interfaces. 2017 Apr 19; 9(15):12959-12966. Matharu Z, Daggumati P, Wang L, Dorofeeva TS, Li Z, Seker E. PMID: 28094510.
      View in: PubMed   Mentions: 13     Fields:    
    26. Nanoporous Gold Biointerfaces: Modifying Nanostructure to Control Neural Cell Coverage and Enhance Electrophysiological Recording Performance. Adv Funct Mater. 2017 Jan 19; 27(3). Chapman CAR, Wang L, Chen H, Garrison J, Lein PJ, Seker E. PMID: 28626362; PMCID: PMC5471629.
      View in: PubMed   Mentions: 22  
    27. In situ electrical modulation and monitoring of nanoporous gold morphology. Nanoscale. 2016 Dec 01; 8(47):19551-19556. Dorofeeva TS, Seker E. PMID: 27790649.
      View in: PubMed   Mentions: 4     Fields:    
    28. Effect of Surface–Molecule Interactions on Molecular Loading Capacity of Nanoporous Gold Thin Films. The Journal of Physical Chemistry C. 2016 Sep 1; 120(34):19189-19194. Polat PO, Seker SE. .
      View in: Publisher Site   Mentions:
    29. Sequence-Specific Electrical Purification of Nucleic Acids with Nanoporous Gold Electrodes. J Am Chem Soc. 2016 06 22; 138(24):7711-7. Daggumati P, Appelt S, Matharu Z, Marco ML, Seker E. PMID: 27244455.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    30. Mechanisms of Reduced Astrocyte Surface Coverage in Cortical Neuron-Glia Co-cultures on Nanoporous Gold Surfaces. Cell Mol Bioeng. 2016 Sep; 9(3):433-442. Chapman CA, Chen H, Stamou M, Lein PJ, Seker E. PMID: 27795742; PMCID: PMC5079442.
      View in: PubMed   Mentions: 11  
    31. Development of a Microsphere-Based System to Facilitate Real-Time Insulin Monitoring. J Diabetes Sci Technol. 2016 05; 10(3):689-96. Kahanovitz L, Seker E, Marks RS, Yarmush ML, Konry T, Russell SJ. PMID: 26721524; PMCID: PMC5038538.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    32. Utilizing dynamic laser speckle to probe nanoscale morphology evolution in nanoporous gold thin films. Opt Express. 2016 Mar 07; 24(5):5323-5333. Chapman CAR, Ly S, Wang L, Seker E, Matthews MJ. PMID: 29092356.
      View in: PubMed   Mentions:    Fields:    
    33. Electrochemically Triggered Pore Expansion in Nanoporous Gold Thin Films. The Journal of Physical Chemistry C. 2016 Feb 25; 120(7):4080-4086. Dorofeeva DT, Matharu MZ, Daggumati DP, Seker SE. .
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    34. Engineering on-chip nanoporous gold material libraries via precision photothermal treatment. Nanoscale. 2016 Jan 14; 8(2):785-95. Chapman CA, Wang L, Biener J, Seker E, Biener MM, Matthews MJ. PMID: 26411758; PMCID: PMC4689632.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    35. Substrate Topography Guides Pore Morphology Evolution in Nanoporous Gold Thin Films. Scr Mater. 2016 Jan 01; 110:33-36. Chapman CA, Daggumati P, Gott SC, Rao MP, Seker E. PMID: 26435685; PMCID: PMC4587536.
      View in: PubMed   Mentions: 1  
    36. Halide-Gated Molecular Release from Nanoporous Gold Thin Films. The Journal of Physical Chemistry C. 2015 Nov 5; 119(44):24812-24818. Polat PO, Seker SE. .
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    37. Immobilization-mediated reduction in melting temperatures of DNA–DNA and DNA–RNA hybrids: Immobilized DNA probe hybridization studied by SPR. Colloids and Surfaces A Physicochemical and Engineering Aspects. 2015 Sep 1; 481(Clin. Chem. 44 1998):72-79. Zhou ZJ, Feller FB, Hinsberg HB, Sethi SG, Feldstein FP, Hihath HJ, Seker SE, Marco MM, Knoesen KA, Miller MR. .
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    38. Biofouling-resilient nanoporous gold electrodes for DNA sensing. Anal Chem. 2015 Sep 01; 87(17):8618-22. Daggumati P, Matharu Z, Wang L, Seker E. PMID: 26274576.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsPHPublic Health
    39. Electrically tunable pore morphology in nanoporous gold thin films. Nano Research. 2015 Jul 1; 8(7):2188-2198. Dorofeeva DT, Seker SE. .
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    40. Effect of nanoporous gold thin film morphology on electrochemical DNA sensing. Anal Chem. 2015 Aug 18; 87(16):8149-56. Daggumati P, Matharu Z, Seker E. PMID: 25892217.
      View in: PubMed   Mentions: 24     Fields:    
    41. Nanoporous gold as a neural interface coating: effects of topography, surface chemistry, and feature size. ACS Appl Mater Interfaces. 2015 Apr 08; 7(13):7093-100. Chapman CA, Chen H, Stamou M, Biener J, Biener MM, Lein PJ, Seker E. PMID: 25706691; PMCID: PMC4517587.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    42. Resolving cancer-stroma interfacial signalling and interventions with micropatterned tumour-stromal assays. Nat Commun. 2014 Dec 09; 5:5662. Shen K, Luk S, Hicks DF, Elman JS, Bohr S, Iwamoto Y, Murray R, Pena K, Wang F, Seker E, Weissleder R, Yarmush ML, Toner M, Sgroi D, Parekkadan B. PMID: 25489927; PMCID: PMC4261930.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    43. Molecular release from patterned nanoporous gold thin films. Nanoscale. 2014 Jun 21; 6(12):7062-71. Kurtulus O, Daggumati P, Seker E. PMID: 24842586.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    44. A long academic journey. Sci Transl Med. 2014 May 07; 6(235):235cm4. Onaral B, Seker E. PMID: 24807555.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    45. Fabrication and characterization of flexible and tunable plasmonic nanostructures. Sci Rep. 2013 Dec 02; 3:3396. Kahraman M, Daggumati P, Kurtulus O, Seker E, Wachsmann-Hogiu S. PMID: 24292236; PMCID: PMC3844966.
      View in: PubMed   Mentions: 23     Fields:    
    46. Bacterial Vibrations. Science Translational Medicine. 2013 Jul 31; 5(196):196ec126-196ec126. Seker SE. .
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    47. Microfabrication of nanoporous gold patterns for cell-material interaction studies. J Vis Exp. 2013 Jul 15; (77):e50678. Daggumati P, Kurtulus O, Chapman CA, Dimlioglu D, Seker E. PMID: 23893025; PMCID: PMC3735387.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    48. Microfluidics: On-Chip Platforms as In Vitro Disease Models. . 2013 Feb 1; 213-239. Gao GS, Seker SE, Yarmush YM. .
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    49. Tuning Drug Release Profile from Nanoporous Gold Thin Films. MRS Advances. 2013 Jan 1; 1569:259-263. Kurtulus KO, Seker SE. .
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    50. Ex vivo gene delivery to hepatocytes: techniques, challenges, and underlying mechanisms. Ann Biomed Eng. 2012 Sep; 40(9):1851-61. Gao S, Seker E, Casali M, Wang F, Bale SS, Price GM, Yarmush ML. PMID: 22484829; PMCID: PMC3901163.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    51. Microfabrication-compatible nanoporous gold foams as biomaterials for drug delivery. Adv Healthc Mater. 2012 Mar; 1(2):172-6. Seker E, Berdichevsky Y, Staley KJ, Yarmush ML. PMID: 23184720; PMCID: PMC3532581.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    52. Particles and microfluidics merged: perspectives of highly sensitive diagnostic detection. Mikrochim Acta. 2012 Feb; 176(3-4):251-269. Konry T, Bale SS, Bhushan A, Shen K, Seker E, Polyak B, Yarmush M. PMID: 25378716; PMCID: PMC4219152.
      View in: PubMed   Mentions: 6     Fields:    
    53. Nanotopography effects on astrocyte attachment to nanoporous gold surfaces. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:6568-71. Kurtulus O, Seker E. PMID: 23367434.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    54. Nanoporous Gold: A Biomaterial for Microfabricated Drug-Delivery Platforms. MRS Advances. 2012 Jan 1; 1415:mrsf11-1415-ii07-04. Seker SE, Berdichevsky BY, Staley SK, Yarmush YM. .
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    55. Platinum nanoparticle-facilitated reflective surfaces for non-contact temperature control in microfluidic devices for PCR amplification. Lab Chip. 2012 Jan 07; 12(1):127-32. Leslie DC, Seker E, Bazydlo LA, Strachan BC, Landers JP. PMID: 22072395.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    56. Solving medical problems with BioMEMS. IEEE Pulse. 2011 Nov; 2(6):51-9. Seker E, Sung JH, Shuler ML, Yarmush ML. PMID: 22147069; PMCID: PMC4490689.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    57. Molecular interactions in surface-assembled monolayers of short double-stranded DNA. Langmuir. 2010 Jul 06; 26(13):11574-80. Huang L, Seker E, Landers JP, Begley MR, Utz M. PMID: 20550165.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    58. PDMS-Glass Interface Adhesion Energy Determined Via Comprehensive Solutions for Thin Film Bulge/Blister Tests. Journal of Applied Mechanics. 2010 May 1; 77(3):031007. Sofla SA, Seker SE, Landers LJ, Begley BM. .
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    59. The fabrication of low-impedance nanoporous gold multiple-electrode arrays for neural electrophysiology studies. Nanotechnology. 2010 Mar 26; 21(12):125504. Seker E, Berdichevsky Y, Begley MR, Reed ML, Staley KJ, Yarmush ML. PMID: 20203356; PMCID: PMC3136242.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    60. Nanoporous Gold: Fabrication, Characterization, and Applications. Materials. 2009 Dec 3; 2(4):2188-2215. Seker SE, Reed RM, Begley BM. .
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    61. High-throughput screening of nanoparticle catalysts made by flame spray pyrolysis as hydrocarbon/NO oxidation catalysts. J Am Chem Soc. 2009 Jul 08; 131(26):9207-19. Weidenhof B, Reiser M, Stöwe K, Maier WF, Kim M, Azurdia J, Gulari E, Seker E, Barks A, Laine RM. PMID: 19566095.
      View in: PubMed   Mentions: 7     Fields:    
    62. Nonlinear pressure-flow relationships for passive microfluidic valves. Lab Chip. 2009 Sep 21; 9(18):2691-7. Seker E, Leslie DC, Haj-Hariri H, Landers JP, Utz M, Begley MR. PMID: 19704985.
      View in: PubMed   Mentions: 8     Fields:    
    63. Frequency-specific flow control in microfluidic circuits with passive elastomeric features. Nature Physics. 2009 Mar 1; 5(3):231-235. Leslie LD, Easley EC, Seker SE, Karlinsey KJ, Utz UM, Begley BM, Landers LJ. .
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    64. A thermal treatment approach to reduce microscale void formation in blanket nanoporous gold films. Scripta Materialia. 2009 Mar 1; 60(6):435-438. Seker SE, Reed RM, Begley BM. .
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    65. Flexible and conductive bilayer membranes of nanoporous gold and silicone: Synthesis and characterization. Applied Physics Letters. 2008 Apr 14; 92(15):154101. Seker SE, Reed RM, Utz UM, Begley BM. .
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    66. Relationships Between Morphology and Stress-State of Gold-Silver Alloys and Nanoporous Gold Blanket Films. ECS Transactions. 2008 Jan 1; 11(24):43-48. Seker SE, Gaskins GJ, Begley BM, Bart-Smith BH, Zangari ZG, Kelly KR, Reed RM. .
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    67. Kinetics of capillary wetting in nanoporous films in the presence of surface evaporation. Applied Physics Letters. 2008 Jan 1; 92(1):013128. Seker SE, Begley BM, Reed RM, Utz UM. .
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    68. The effects of post-fabrication annealing on the mechanical properties of freestanding nanoporous gold structures. Acta Materialia. 2007 Aug 1; 55(14):4593-4602. Seker SE, Gaskins GJ, Bart-Smith BH, Zhu ZJ, Reed RM, Zangari ZG, Kelly KR, Begley BM. .
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    69. Wetting Phenomenon in Nanoporous Gold Films. ECS Transactions. 2007 Jan 1; 6(11):83-89. Seker SE, Tauer TT, Zhu ZJ, Begley BM, Bart-Smith BH, Zangari ZG, Kelly KR, Utz UM, Reed RM. .
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    70. Investigating Porosity and Stress Evolution in Nanoporous Gold Films by Timed Thermal Treatment. ECS Transactions. 2007 Jan 1; 6(11):91-97. Seker SE, Begley BM, Bart-Smith BH, Zangari ZG, Kelly KR, Reed RM. .
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    71. Mitigation of tensile failure in released nanoporous metal microstructures via thermal treatment. Applied Physics Letters. 2006 Sep 25; 89(13):133104. Zhu ZJ, Seker SE, Bart-Smith BH, Begley BM, Kelly KR, Zangari ZG, Lye LW, Reed RM. .
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