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Recurrent patterns of TOP1-mediated neuronal genomic damage shared by major neurodegenerative disorders. Cell. 2026 Jul 01.
Zhou Z, Luquette LJ, Dong G, Kim J, Ku J, Kim K, Ramesh N, Bae M, Caplin A, Shao DD, Sahile B, Essuman K, Goodman E, Miller MB, Huang AY, Nathan WJ, Nussenzweig A, Park PJ, Lagier-Tourenne C, Lee EA, Walsh CA. PMID: 42385702; PMCID: PMC13340254.
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1 Fields:
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The Common Fund Data Ecosystem (CFDE). bioRxiv. 2026 Apr 16.
Jurgens JA, Bueckle A, Vora J, Maurya MR, Ahooyi TM, Zheng E, Stear B, Wang D, Ree C, Ramachandran S, Nekrutenko A, Brandes M, Thaker S, Katz DH, Munoz-Torres MC, Diamant I, Chun HE, Simmons JA, Tasian SK, Jenkins SL, Evangelista JE, Dodia H, Saha S, Lindquist MA, Gajjala V, Nemarich C, Zhen J, Ross KE, Byrd AI, Shilin A, Metzger VT, Bologa CG, Srinivasan S, Jang D, Kumar P, Taub LD, Levanto MP, Petrosyan V, Anandakrishnan M, Kim M, Clarke DJB, Ivich A, Crichton DJ, Smallen S, Bordelon D, Chen C, Schroeder AJ, Mahabal A, Cao-Berg I, Kim S, Masood D, Yu K, Gaulton KJ, Jimenez-Morales D, Rincon JM, Honick BJ, Wang W, Wu CH, Milosavljevic A, Blood PD, Boline J, Oprea TI, Lambert CG, de Bono B, Park PJ, Silverstein JC, Flannick J, Yang JJ, Grethe JS, Subramaniam S, Tiemeyer M, Clark T, Wheeler MT, Kahn A, Burnette J, Ranzinger R, Schatz MC, Gibson L, Burtt NP, Carson JP, Chen JY, Ping P, Davis S, Taylor DM, Börner K, Dillman A, Bursey K, Ma'ayan A, CFDE Consortium, Mazumder R, Roth ME, Greene CS. PMID: 41993383; PMCID: PMC13082093.
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Multiorgan Molecular Landscape of Severe COVID-19 Revealed by Consensus Gene Signatures and RAB8B Targeting. J Med Virol. 2026 Apr; 98(4):e70932.
Avila JP, Park P, Singh Y, Amaral PP, Castro Í, Ten-Caten F, Schuch V, Gonçalves ANA, Giddaluru J, Morais MCC, Ogava RLT, Lubiana T, de Castro GA, Aquino R, Durão L, Martins JR, Jimenez L, Costa-Martins AG, Gonzalez-Dias P, Hirata TDC, Dias TL, Peixe DG, Simizo A, E Silva JCS, Vasconcelos AP, Rodrigues MB, Castelucci BG, Virgillio-da-Silva JV, Menezes L, Moraes-Vieira PM, Cabral-Marques O, Nakaya HI. PMID: 42015392; PMCID: PMC13100344.
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HumansCells
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Lipid Nanoparticle Database towards structure-function modeling and data-driven design for nucleic acid delivery. Nat Commun. 2026 Jan 28; 17(1).
Collins E, Ji J, Kim SG, Witten J, Kim S, Zhu R, Park P, Jung M, Park A, Manan RS, Rudra A, Keum G, Bang EK, Jin JO, Jeang WJ, Langer R, Anderson DG, Im W. PMID: 41605942; PMCID: PMC12992592.
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PubMed Mentions: Fields:
Translation:
Cells
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An integrated view of the structure and function of the human 4D nucleome. Nature. 2026 01; 649(8097):759-776.
Dekker J, Oksuz BA, Zhang Y, Wang Y, Minsk MK, Kuang S, Yang L, Gibcus JH, Krietenstein N, Rando OJ, Xu J, Janssens DH, Henikoff S, Kukalev A, Andréa W, Winick-Ng W, Kempfer R, Pombo A, Yu M, Kumar P, Zhang L, Belmont AS, Sasaki T, van Schaik T, Brueckner L, Peric-Hupkes D, van Steensel B, Wang P, Chai H, Kim M, Ruan Y, Zhang R, Quinodoz SA, Bhat P, Guttman M, Zhao W, Chien S, Liu Y, Venev SV, Plewczynski D, Azcarate II, Szabó D, Thieme CJ, Szczepinska T, Chilinski M, Sengupta K, Conte M, Esposito A, Abraham A, Zhang R, Wang Y, Wen X, Wu Q, Yang Y, Liu J, Boninsegna L, Yildirim A, Zhan Y, Chiariello AM, Bianco S, Lee L, Hu M, Li Y, Barnett RJ, Cook AL, Emerson DJ, Marchal C, Zhao P, Park PJ, Alver BH, Schroeder AJ, Navelkar R, Bakker C, Ronchetti W, Ehmsen S, Veit AD, Gehlenborg N, Wang T, Li D, Wang X, Nicodemi M, Ren B, Zhong S, Phillips-Cremins JE, Gilbert DM, Pollard KS, Alber F, Ma J, Noble WS, Yue F. PMID: 41407856; PMCID: PMC12804090.
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PubMed Mentions:
7 Fields:
Translation:
HumansCells
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Benchmarking of duplex sequencing approaches to reveal somatic mutation landscapes. bioRxiv. 2025 Dec 15.
Zhang Y, Viswanadham VV, Andreopoulos M, Glodzik D, Liu R, Luquette LJ, Jo SY, Narayan A, Niu M, Anderson L, Brew JA, Chao H, Cibulskis C, Dong G, Evani US, Feng WC, Gronska-Peski M, Helland A, Hilal N, Jabara NT, Jin H, Li N, Manam MD, Mallett SL, Runnels A, Scharlee C, Smith C, SMaHT Duplex Sequencing Focus Group, Shao D, Walsh CA, Adalsteinsson VA, Lee EA, Park PJ, Ardlie KG, Germer S, Gibbs RA, Choudhury S, Doddapaneni HV, Evrony GD, Zong C, Coorens THH. PMID: 41446189; PMCID: PMC12724167.
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The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical Data. bioRxiv. 2025 Oct 16.
Ahooyi TM, Stear B, Simmons JA, Metzger VT, Kumar P, Evangelista JE, Clarke DJB, Xie Z, Kim H, Jenkins SL, Maurya MR, Ramachandran S, Fahy E, Gillespie TH, Imam FT, Kokash N, Roth ME, Fullem R, Jevtic D, Mihajlovic A, Tiemeyer M, Bakker C, Schroeder AJ, Markowski J, Nedzel J, Hill DD, Terry J, Nemarich C, Boline J, Park PJ, Ardlie KG, Vora J, Mazumder R, Ranzinger R, de Bono B, Subramaniam S, Grethe JS, Yang JJ, Lambert CG, Resnick A, Milosavljevic A, Ma'ayan A, Silverstein JC, Taylor DM. PMID: 40832351; PMCID: PMC12363844.
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Comprehensive benchmarking of somatic single-nucleotide variant and indel detection at ultra-low allele fractions using short- and long-read data. bioRxiv. 2025 Oct 14.
Jiny Ha YJ, Maziec D, Markowski J, Georges SJ, Parmalee NL, Berselli M, Coorens THH, Dong S, Gardiner S, Kalra D, Li D, Miao B, Musunuri R, Xue L, Yu Z, Walker K, Anderson L, Au NYT, Cibulskis C, Doddapaneni H, Grochowski CM, Jensen DM, Lindsay T, Loy K, Narayan A, Narzisi G, Ou J, Pham MM, Runnels AM, Stergachis AB, Sutherlin LM, Wang T, Jin H, Feng WC, Zhang Y, Veit AD, TaeHee Kim C, Chun HE, SMaHT Network Single Nucleotide Variant (SNV) Working Group, Ardlie K, Fulton RS, Germer S, Gibbs R, Marth GT, Bennett JT, Park PJ. PMID: 41278982; PMCID: PMC12632906.
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Multi-platform framework for mapping somatic retrotransposition in human tissues. bioRxiv. 2025 Oct 07.
Wang S, Bae M, Wang J, Zhao B, Nguyen K, Mallett S, Switzenberg JA, Losh SJ, Sexton CE, Miao B, Dong S, Zeng X, Wang Z, McDonald TL, Mumm C, Gadde RK, Tariq AM, Chen Z, Feng WC, Burn A, Park J, Chu C, Shen H, Wang T, Urban AE, Zhu X, Li H, Burns KH, Chun HE, Park PJ, SMaHT MEI Working Group, Boyle AP, Mills RE, Zhou W, Lee EA. PMID: 41278868; PMCID: PMC12632373.
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FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics Format. ArXiv. 2025 Aug 21.
Navelkar R, Cosolo A, Bintu B, Cheng Y, Gardeux V, Gutnik S, Fujimori T, Hafner A, Jay A, Jia BB, Jussila AP, Llimos G, Lioutas A, Martins NMC, Moore WJ, Takei Y, Wong F, Yang K, Zhang H, Zhu Q, Bienko M, Bintu L, Cai L, Deplancke B, Nollmann M, Mango SE, Ren B, Park PJ, Sawh AN, Schroeder A, Swedlow JR, Vahedi G, Wu CT, Aufmkolk S, Boettiger AN, Farabella I, Strambio-De-Castillia C, Wang S. PMID: 40895078; PMCID: PMC12393234.
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The Somatic Mosaicism across Human Tissues Network. Nature. 2025 07; 643(8070):47-59.
Coorens THH, Oh JW, Choi YA, Lim NS, Zhao B, Voshall A, Abyzov A, Antonacci-Fulton L, Aparicio S, Ardlie KG, Bell TJ, Bennett JT, Bernstein BE, Blanchard TG, Boyle AP, Buenrostro JD, Burns KH, Chen F, Chen R, Choudhury S, Doddapaneni HV, Eichler EE, Evrony GD, Faith MA, Fazzio TG, Fulton RS, Garber M, Gehlenborg N, Germer S, Getz G, Gibbs RA, Hernandez RG, Jin F, Korbel JO, Landau DA, Lawson HA, Lennon NJ, Li H, Li Y, Loh PR, Marth G, McConnell MJ, Mills RE, Montgomery SB, Natarajan P, Park PJ, Satija R, Sedlazeck FJ, Shao DD, Shen H, Stergachis AB, Underhill HR, Urban AE, VonDran MW, Walsh CA, Wang T, Wu TP, Zong C, Lee EA, Vaccarino FM, Somatic Mosaicism across Human Tissues Network. PMID: 40604182; PMCID: PMC12875085.
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15 Fields:
Translation:
HumansCells
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Retraction notice to "Efficacy of Sunitinib and Radiotherapy in Genetically Engineered Mouse Model of Soft-Tissue Sarcoma" Int J Radiat Oncol Biol Phys, 2009; 74(4), pp 1207-1216. Int J Radiat Oncol Biol Phys. 2025 06 01; 122(2):524.
Yoon SS, Stangenberg L, Lee YJ, Rothrock C, Dreyfuss JM, Baek KH, Waterman PR, Nielsen GP, Weissleder R, Mahmood U, Park PJ, Jacks T, Dodd RD, Fisher CJ, Ryeom S, Kirsch DG. PMID: 40382175.
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Gantry-based pencil beam scanning proton therapy for uveal melanoma: IMPT versus proton arc therapy. Radiat Oncol. 2025 Apr 02; 20(1):48.
Qi H, Hu L, Huang S, Lee YP, Yu F, Chen Q, Yang Y, Kang M, Zhai H, Vermeulen M, Shim A, Park P, Ding X, Zhou J, Abramson DH, Francis JH, Simone CB, Barker CA, Lin H. PMID: 40176046; PMCID: PMC11963511.
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Translation:
Humans
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Recurrent patterns of widespread neuronal genomic damage shared by major neurodegenerative disorders. bioRxiv. 2025 Mar 08.
Zhou Z, Luquette LJ, Dong G, Kim J, Ku J, Kim K, Bae M, Shao DD, Sahile B, Miller MB, Huang AY, Nathan WJ, Nussenzweig A, Park PJ, Lagier-Tourenne C, Lee EA, Walsh CA. PMID: 40093130; PMCID: PMC11908196.
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An integrated view of the structure and function of the human 4D nucleome. bioRxiv. 2024 Oct 27.
4D Nucleome Consortium, Dekker J, Oksuz BA, Zhang Y, Wang Y, Minsk MK, Kuang S, Yang L, Gibcus JH, Krietenstein N, Rando OJ, Xu J, Janssens DH, Henikoff S, Kukalev A, Willemin A, Winick-Ng W, Kempfer R, Pombo A, Yu M, Kumar P, Zhang L, Belmont AS, Sasaki T, van Schaik T, Brueckner L, Peric-Hupkes D, van Steensel B, Wang P, Chai H, Kim M, Ruan Y, Zhang R, Quinodoz SA, Bhat P, Guttman M, Zhao W, Chien S, Liu Y, Venev SV, Plewczynski D, Azcarate II, Szabó D, Thieme CJ, Szczepinska T, Chilinski M, Sengupta K, Conte M, Esposito A, Abraham A, Zhang R, Wang Y, Wen X, Wu Q, Yang Y, Liu J, Boninsegna L, Yildirim A, Zhan Y, Chiariello AM, Bianco S, Lee L, Hu M, Li Y, Barnett RJ, Cook AL, Emerson DJ, Marchal C, Zhao P, Park P, Alver BH, Schroeder A, Navelkar R, Bakker C, Ronchetti W, Ehmsen S, Veit A, Gehlenborg N, Wang T, Li D, Wang X, Nicodemi M, Ren B, Zhong S, Phillips-Cremins JE, Gilbert DM, Pollard KS, Alber F, Ma J, Noble WS, Yue F. PMID: 39484446; PMCID: PMC11526861.
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PubMed Mentions:
1
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Somatic mosaicism in schizophrenia brains reveals prenatal mutational processes. Science. 2024 10 11; 386(6718):217-224.
Maury EA, Jones A, Seplyarskiy V, Nguyen TTL, Rosenbluh C, Bae T, Wang Y, Abyzov A, Khoshkhoo S, Chahine Y, Zhao S, Venkatesh S, Root E, Voloudakis G, Roussos P, Brain Somatic Mosaicism Network‡, Park PJ, Akbarian S, Brennand K, Reilly S, Lee EA, Sunyaev SR, Walsh CA, Chess A. PMID: 39388546; PMCID: PMC11490355.
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PubMed Mentions:
9 Fields:
Translation:
HumansCells
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Hyper-Dependence on NHEJ Enables Synergy between DNA-PK Inhibitors and Low-Dose Doxorubicin in Leiomyosarcoma. Clin Cancer Res. 2023 12 15; 29(24):5128-5139.
Marino-Enriquez A, Novotny JP, Gulhan DC, Klooster I, Tran AV, Kasbo M, Lundberg MZ, Ou WB, Tao DL, Pilco-Janeta DF, Mao VY, Zenke FT, Leeper BA, Gokhale PC, Cowley GS, Baker LH, Ballman KV, Root DE, Albers J, Park PJ, George S, Fletcher JA. PMID: 37773632; PMCID: PMC10841464.
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PubMed Mentions:
8 Fields:
Translation:
HumansAnimalsCells
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Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases. Sci Data. 2023 11 20; 10(1):813.
Garrison MA, Jang Y, Bae T, Cherskov A, Emery SB, Fasching L, Jones A, Moldovan JB, Molitor C, Pochareddy S, Peters MA, Shin JH, Wang Y, Yang X, Akbarian S, Chess A, Gage FH, Gleeson JG, Kidd JM, McConnell M, Mills RE, Moran JV, Park PJ, Sestan N, Urban AE, Vaccarino FM, Walsh CA, Weinberger DR, Wheelan SJ, Abyzov A, BSMN Consortium. PMID: 37985666; PMCID: PMC10662356.
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PubMed Mentions:
3 Fields:
Translation:
Humans
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A pan-tissue survey of mosaic chromosomal alterations in 948 individuals. Nat Genet. 2023 11; 55(11):1901-1911.
Gao T, Kastriti ME, Ljungström V, Heinzel A, Tischler AS, Oberbauer R, Loh PR, Adameyko I, Park PJ, Kharchenko PV. PMID: 37904053; PMCID: PMC10838621.
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PubMed Mentions:
14 Fields:
Translation:
Humans
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FcRγ- NK Cell Induction by Specific Cytomegalovirus and Expansion by Subclinical Viral Infections in Rhesus Macaques. J Immunol. 2023 08 01; 211(3):443-452.
Lee J, Chang WLW, Scott JM, Hong S, Lee T, Deere JD, Park PH, Sparger EE, Dandekar S, Hartigan-O'Connor DJ, Barry PA, Kim S. PMID: 37314415; PMCID: PMC10932550.
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PubMed Mentions:
3 Fields:
Translation:
HumansAnimalsCells
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A framework for individualized splice-switching oligonucleotide therapy. Nature. 2023 07; 619(7971):828-836.
Kim J, Woo S, de Gusmao CM, Zhao B, Chin DH, DiDonato RL, Nguyen MA, Nakayama T, Hu CA, Soucy A, Kuniholm A, Thornton JK, Riccardi O, Friedman DA, El Achkar CM, Dash Z, Cornelissen L, Donado C, Faour KNW, Bush LW, Suslovitch V, Lentucci C, Park PJ, Lee EA, Patterson A, Philippakis AA, Margus B, Berde CB, Yu TW. PMID: 37438524; PMCID: PMC10371869.
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PubMed Mentions:
89 Fields:
Translation:
HumansCells
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Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2023 Jun; 55(6):1076.
Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, PCAWG Structural Variation Working Group, Park PJ, PCAWG Consortium. PMID: 36944733; PMCID: PMC10260391.
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1 Fields:
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Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nat Genet. 2023 Jun; 55(6):1080.
Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, Demeulemeester J, Santamarina M, Ju YS, Temes J, Garcia-Souto D, Detering H, Li Y, Rodriguez-Castro J, Dueso-Barroso A, Bruzos AL, Dentro SC, Blanco MG, Contino G, Ardeljan D, Tojo M, Roberts ND, Zumalave S, Edwards PA, Weischenfeldt J, Puiggròs M, Chong Z, Chen K, Lee EA, Wala JA, Raine KM, Butler A, Waszak SM, Navarro FCP, Schumacher SE, Monlong J, Maura F, Bolli N, Bourque G, Gerstein M, Park PJ, Wedge DC, Beroukhim R, Torrents D, Korbel JO, Martincorena I, Fitzgerald RC, Van Loo P, Kazazian HH, Burns KH, PCAWG Structural Variation Working Group, Campbell PJ, Tubio JMC, PCAWG Consortium. PMID: 36944736; PMCID: PMC10260396.
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4 Fields:
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Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2023 May; 55(5):893.
Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, PCAWG Structural Variation Working Group, Park PJ, PCAWG Consortium. PMID: 32404988; PMCID: PMC10300649.
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5 Fields:
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Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA. Cancer Discov. 2023 03 01; 13(3):654-671.
Cortes-Ciriano I, Steele CD, Piculell K, Al-Ibraheemi A, Eulo V, Bui MM, Chatzipli A, Dickson BC, Borcherding DC, Feber A, Galor A, Hart J, Jones KB, Jordan JT, Kim RH, Lindsay D, Miller C, Nishida Y, Proszek PZ, Serrano J, Sundby RT, Szymanski JJ, Ullrich NJ, Viskochil D, Wang X, Snuderl M, Park PJ, Flanagan AM, Hirbe AC, Pillay N, Miller DT, Genomics of MPNST (GeM) Consortium. PMID: 36598417; PMCID: PMC9983734.
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PubMed Mentions:
55 Fields:
Translation:
HumansCells
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Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun. 2022 Dec 08; 13(1):7574.
Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortés-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, PCAWG-Structural Variation Working Group, Brors B, Rippe K, Jones DTW, Feuerbach L, PCAWG Consortium. PMID: 36481818; PMCID: PMC9731961.
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Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements. Nat Genet. 2022 10; 54(10):1564-1571.
Luquette LJ, Miller MB, Zhou Z, Bohrson CL, Zhao Y, Jin H, Gulhan D, Ganz J, Bizzotto S, Kirkham S, Hochepied T, Libert C, Galor A, Kim J, Lodato MA, Garaycoechea JI, Gawad C, West J, Walsh CA, Park PJ. PMID: 36163278; PMCID: PMC9833626.
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PubMed Mentions:
54 Fields:
Translation:
HumansCells
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Noninvasive Stereotactic Radiation for Refractory Ventricular Tachycardia After Failure of Cardiac Sympathetic Denervation. JACC Case Rep. 2022 Sep 21; 4(18):1189-1194.
Bernstein HM, Leon W, Daly ME, Park P, Ghasemiesfe A, Beri N, Eng M, Srivatsa UN. PMID: 36213875; PMCID: PMC9537071.
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4
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Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer. Cancer Discov. 2022 06 02; 12(6):1462-1481.
Rajurkar M, Parikh AR, Solovyov A, You E, Kulkarni AS, Chu C, Xu KH, Jaicks C, Taylor MS, Wu C, Alexander KA, Good CR, Szabolcs A, Gerstberger S, Tran AV, Xu N, Ebright RY, Van Seventer EE, Vo KD, Tai EC, Lu C, Joseph-Chazan J, Raabe MJ, Nieman LT, Desai N, Arora KS, Ligorio M, Thapar V, Cohen L, Garden PM, Senussi Y, Zheng H, Allen JN, Blaszkowsky LS, Clark JW, Goyal L, Wo JY, Ryan DP, Corcoran RB, Deshpande V, Rivera MN, Aryee MJ, Hong TS, Berger SL, Walt DR, Burns KH, Park PJ, Greenbaum BD, Ting DT. PMID: 35320348; PMCID: PMC9167735.
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PubMed Mentions:
34 Fields:
Translation:
HumansAnimals
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Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. Nat Methods. 2022 Feb; 19(2):256.
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ, Cosolo A, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, Kunis S, Lacoste J, Laude A, Ma WY, Marcello M, Montero-Llopis P, Nelson G, Nitschke R, Pimentel JA, Weidtkamp-Peters S, Park PJ, Alver BH, Grunwald D, Strambio-De-Castillia C. PMID: 34952955; PMCID: PMC8828465.
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Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. Nat Methods. 2021 12; 18(12):1489-1495.
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ, Cosolo A, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, Kunis S, Lacoste J, Laude A, Ma WY, Marcello M, Montero-Llopis P, Nelson G, Nitschke R, Pimentel JA, Weidtkamp-Peters S, Park PJ, Alver BH, Grunwald D, Strambio-De-Castillia C. PMID: 34862503; PMCID: PMC8648560.
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PubMed Mentions:
21 Fields:
Translation:
HumansAnimalsCells
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Predicting future from past: The genomic basis of recurrent and rapid stickleback evolution. Sci Adv. 2021 Jun; 7(25).
Roberts Kingman GA, Vyas DN, Jones FC, Brady SD, Chen HI, Reid K, Milhaven M, Bertino TS, Aguirre WE, Heins DC, von Hippel FA, Park PJ, Kirch M, Absher DM, Myers RM, Di Palma F, Bell MA, Kingsley DM, Veeramah KR. PMID: 34144992; PMCID: PMC8213234.
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57 Fields:
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Comprehensive identification of somatic nucleotide variants in human brain tissue. Genome Biol. 2021 03 29; 22(1):92.
Wang Y, Bae T, Thorpe J, Sherman MA, Jones AG, Cho S, Daily K, Dou Y, Ganz J, Galor A, Lobon I, Pattni R, Rosenbluh C, Tomasi S, Tomasini L, Yang X, Zhou B, Akbarian S, Ball LL, Bizzotto S, Emery SB, Doan R, Fasching L, Jang Y, Juan D, Lizano E, Luquette LJ, Moldovan JB, Narurkar R, Oetjens MT, Rodin RE, Sekar S, Shin JH, Soriano E, Straub RE, Zhou W, Chess A, Gleeson JG, Marquès-Bonet T, Park PJ, Peters MA, Pevsner J, Walsh CA, Weinberger DR, Brain Somatic Mosaicism Network, Vaccarino FM, Moran JV, Urban AE, Kidd JM, Mills RE, Abyzov A. PMID: 33781308; PMCID: PMC8006362.
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PubMed Mentions:
33 Fields:
Translation:
HumansCells
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FcRγ Gene Editing Reprograms Conventional NK Cells to Display Key Features of Adaptive Human NK Cells. iScience. 2020 Nov 20; 23(11):101709.
Liu W, Scott JM, Langguth E, Chang H, Park PH, Kim S. PMID: 33205022; PMCID: PMC7649287.
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26
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Systematic Assessment of Tumor Purity and Its Clinical Implications. JCO Precis Oncol. 2020; 4.
Haider S, Tyekucheva S, Prandi D, Fox NS, Ahn J, Xu AW, Pantazi A, Park PJ, Laird PW, Sander C, Wang W, Demichelis F, Loda M, Boutros PC, Cancer Genome Atlas Research Network. PMID: 33015524; PMCID: PMC7529507.
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PubMed Mentions:
32 Fields:
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A user guide for the online exploration and visualization of PCAWG data. Nat Commun. 2020 07 07; 11(1):3400.
Goldman MJ, Zhang J, Fonseca NA, Cortés-Ciriano I, Xiang Q, Craft B, Piñeiro-Yáñez E, O'Connor BD, Bazant W, Barrera E, Muñoz-Pomer A, Petryszak R, Füllgrabe A, Al-Shahrour F, Keays M, Haussler D, Weinstein JN, Huber W, Valencia A, Park PJ, Papatheodorou I, Zhu J, Ferretti V, Vazquez M. PMID: 32636365; PMCID: PMC7340791.
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PubMed Mentions:
26 Fields:
Translation:
Humans
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Dysregulation of cancer genes by recurrent intergenic fusions. Genome Biol. 2020 07 06; 21(1):166.
Yun JW, Yang L, Park HY, Lee CW, Cha H, Shin HT, Noh KW, Choi YL, Park WY, Park PJ. PMID: 32631391; PMCID: PMC7339451.
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PubMed Mentions:
27 Fields:
Translation:
Humans
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Author Correction: Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer. Nat Commun. 2020 05 18; 11(1):2543.
Färkkilä A, Gulhan DC, Casado J, Jacobson CA, Nguyen H, Kochupurakkal B, Maliga Z, Yapp C, Chen YA, Schapiro D, Zhou Y, Graham JR, Dezube BJ, Munster P, Santagata S, Garcia E, Rodig S, Lako A, Chowdhury D, Shapiro GI, Matulonis UA, Park PJ, Hautaniemi S, Sorger PK, Swisher EM, D'Andrea AD, Konstantinopoulos PA. PMID: 32424117; PMCID: PMC7235235.
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PubMed Mentions:
4 Fields:
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Mechanisms and therapeutic implications of hypermutation in gliomas. Nature. 2020 04; 580(7804):517-523.
Touat M, Li YY, Boynton AN, Spurr LF, Iorgulescu JB, Bohrson CL, Cortes-Ciriano I, Birzu C, Geduldig JE, Pelton K, Lim-Fat MJ, Pal S, Ferrer-Luna R, Ramkissoon SH, Dubois F, Bellamy C, Currimjee N, Bonardi J, Qian K, Ho P, Malinowski S, Taquet L, Jones RE, Shetty A, Chow KH, Sharaf R, Pavlick D, Albacker LA, Younan N, Baldini C, Verreault M, Giry M, Guillerm E, Ammari S, Beuvon F, Mokhtari K, Alentorn A, Dehais C, Houillier C, Laigle-Donadey F, Psimaras D, Lee EQ, Nayak L, McFaline-Figueroa JR, Carpentier A, Cornu P, Capelle L, Mathon B, Barnholtz-Sloan JS, Chakravarti A, Bi WL, Chiocca EA, Fehnel KP, Alexandrescu S, Chi SN, Haas-Kogan D, Batchelor TT, Frampton GM, Alexander BM, Huang RY, Ligon AH, Coulet F, Delattre JY, Hoang-Xuan K, Meredith DM, Santagata S, Duval A, Sanson M, Cherniack AD, Wen PY, Reardon DA, Marabelle A, Park PJ, Idbaih A, Beroukhim R, Bandopadhayay P, Bielle F, Ligon KL. PMID: 32322066; PMCID: PMC8235024.
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PubMed Mentions:
390 Fields:
Translation:
HumansAnimalsCells
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Genomics of MPNST (GeM) Consortium: Rationale and Study Design for Multi-Omic Characterization of NF1-Associated and Sporadic MPNSTs. Genes (Basel). 2020 04 02; 11(4).
Miller DT, Cortés-Ciriano I, Pillay N, Hirbe AC, Snuderl M, Bui MM, Piculell K, Al-Ibraheemi A, Dickson BC, Hart J, Jones K, Jordan JT, Kim RH, Lindsay D, Nishida Y, Ullrich NJ, Wang X, Park PJ, Flanagan AM. PMID: 32252413; PMCID: PMC7231181.
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PubMed Mentions:
13 Fields:
Translation:
HumansCells
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Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer. Nat Commun. 2020 03 19; 11(1):1459.
Färkkilä A, Gulhan DC, Casado J, Jacobson CA, Nguyen H, Kochupurakkal B, Maliga Z, Yapp C, Chen YA, Schapiro D, Zhou Y, Graham JR, Dezube BJ, Munster P, Santagata S, Garcia E, Rodig S, Lako A, Chowdhury D, Shapiro GI, Matulonis UA, Park PJ, Hautaniemi S, Sorger PK, Swisher EM, D'Andrea AD, Konstantinopoulos PA. PMID: 32193378; PMCID: PMC7081234.
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PubMed Mentions:
172 Fields:
Translation:
HumansCellsCTClinical Trials
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Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun. 2020 02 05; 11(1):733.
Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortés-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, PCAWG-Structural Variation Working Group, Brors B, Rippe K, Jones DTW, Feuerbach L, PCAWG Consortium. PMID: 32024817; PMCID: PMC7002710.
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PubMed Mentions:
85 Fields:
Translation:
HumansCells
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Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nat Genet. 2020 03; 52(3):306-319.
Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, Demeulemeester J, Santamarina M, Ju YS, Temes J, Garcia-Souto D, Detering H, Li Y, Rodriguez-Castro J, Dueso-Barroso A, Bruzos AL, Dentro SC, Blanco MG, Contino G, Ardeljan D, Tojo M, Roberts ND, Zumalave S, Edwards PA, Weischenfeldt J, Puiggròs M, Chong Z, Chen K, Lee EA, Wala JA, Raine KM, Butler A, Waszak SM, Navarro FCP, Schumacher SE, Monlong J, Maura F, Bolli N, Bourque G, Gerstein M, Park PJ, Wedge DC, Beroukhim R, Torrents D, Korbel JO, Martincorena I, Fitzgerald RC, Van Loo P, Kazazian HH, Burns KH, PCAWG Structural Variation Working Group, Campbell PJ, Tubio JMC, PCAWG Consortium. PMID: 32024998; PMCID: PMC7058536.
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PubMed Mentions:
256 Fields:
Translation:
HumansCells
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Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2020 03; 52(3):331-341.
Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, PCAWG Structural Variation Working Group, Park PJ, PCAWG Consortium. PMID: 32025003; PMCID: PMC7058534.
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PubMed Mentions:
410 Fields:
Translation:
Humans
-
Accurate detection of mosaic variants in sequencing data without matched controls. Nat Biotechnol. 2020 03; 38(3):314-319.
Dou Y, Kwon M, Rodin RE, Cortés-Ciriano I, Doan R, Luquette LJ, Galor A, Bohrson C, Walsh CA, Park PJ. PMID: 31907404; PMCID: PMC7065972.
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PubMed Mentions:
54 Fields:
Translation:
Humans
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Patient-Customized Oligonucleotide Therapy for a Rare Genetic Disease. N Engl J Med. 2019 10 24; 381(17):1644-1652.
Kim J, Hu C, Moufawad El Achkar C, Black LE, Douville J, Larson A, Pendergast MK, Goldkind SF, Lee EA, Kuniholm A, Soucy A, Vaze J, Belur NR, Fredriksen K, Stojkovska I, Tsytsykova A, Armant M, DiDonato RL, Choi J, Cornelissen L, Pereira LM, Augustine EF, Genetti CA, Dies K, Barton B, Williams L, Goodlett BD, Riley BL, Pasternak A, Berry ER, Pflock KA, Chu S, Reed C, Tyndall K, Agrawal PB, Beggs AH, Grant PE, Urion DK, Snyder RO, Waisbren SE, Poduri A, Park PJ, Patterson A, Biffi A, Mazzulli JR, Bodamer O, Berde CB, Yu TW. PMID: 31597037; PMCID: PMC6961983.
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PubMed Mentions:
440 Fields:
Translation:
Humans
-
Tracing Oncogene Rearrangements in the Mutational History of Lung Adenocarcinoma. Cell. 2019 06 13; 177(7):1842-1857.e21.
Lee JJ, Park S, Park H, Kim S, Lee J, Lee J, Youk J, Yi K, An Y, Park IK, Kang CH, Chung DH, Kim TM, Jeon YK, Hong D, Park PJ, Ju YS, Kim YT. PMID: 31155235.
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PubMed Mentions:
135 Fields:
Translation:
Humans
-
A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases. Cell Rep. 2018 07 10; 24(2):515-527.
Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, Seidman J, Luquette LJ, Xi R, Chin L, Protopopov A, Li W, Park PJ, Kucherlapati R, Creighton CJ. PMID: 29996110; PMCID: PMC6092947.
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PubMed Mentions:
56 Fields:
Translation:
HumansCells
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The BabySeq project: implementing genomic sequencing in newborns. BMC Pediatr. 2018 07 09; 18(1):225.
Holm IA, Agrawal PB, Ceyhan-Birsoy O, Christensen KD, Fayer S, Frankel LA, Genetti CA, Krier JB, LaMay RC, Levy HL, McGuire AL, Parad RB, Park PJ, Pereira S, Rehm HL, Schwartz TS, Waisbren SE, Yu TW, BabySeq Project Team, Green RC, Beggs AH. PMID: 29986673; PMCID: PMC6038274.
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PubMed Mentions:
107 Fields:
Translation:
HumansPHPublic Health
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Single-Center Experience Using Marginal Liver Grafts in Korea. Transplant Proc. 2018 May; 50(4):1147-1152.
Park PJ, Yu YD, Yoon YI, Kim SR, Kim DS. PMID: 29731083.
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PubMed Mentions:
2 Fields:
Translation:
Humans
-
Comprehensive Characterization of Cancer Driver Genes and Mutations. Cell. 2018 04 05; 173(2):371-385.e18.
Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Ng PK, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H, MC3 Working Group, Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L. PMID: 29625053; PMCID: PMC6029450.
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PubMed Mentions:
1155 Fields:
Translation:
Humans
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Aging and neurodegeneration are associated with increased mutations in single human neurons. Science. 2018 02 02; 359(6375):555-559.
Lodato MA, Rodin RE, Bohrson CL, Coulter ME, Barton AR, Kwon M, Sherman MA, Vitzthum CM, Luquette LJ, Yandava CN, Yang P, Chittenden TW, Hatem NE, Ryu SC, Woodworth MB, Park PJ, Walsh CA. PMID: 29217584; PMCID: PMC5831169.
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PubMed Mentions:
353 Fields:
Translation:
HumansCells
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The 4D nucleome project. Nature. 2017 09 13; 549(7671):219-226.
Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S, 4D Nucleome Network. PMID: 28905911; PMCID: PMC5617335.
View in:
PubMed Mentions:
408 Fields:
Translation:
HumansAnimalsCells
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A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations. Cancer Cell. 2017 06 12; 31(6):820-832.e3.
Zhang Y, Kwok-Shing Ng P, Kucherlapati M, Chen F, Liu Y, Tsang YH, de Velasco G, Jeong KJ, Akbani R, Hadjipanayis A, Pantazi A, Bristow CA, Lee E, Mahadeshwar HS, Tang J, Zhang J, Yang L, Seth S, Lee S, Ren X, Song X, Sun H, Seidman J, Luquette LJ, Xi R, Chin L, Protopopov A, Westbrook TF, Shelley CS, Choueiri TK, Ittmann M, Van Waes C, Weinstein JN, Liang H, Henske EP, Godwin AK, Park PJ, Kucherlapati R, Scott KL, Mills GB, Kwiatkowski DJ, Creighton CJ. PMID: 28528867; PMCID: PMC5502825.
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PubMed Mentions:
335 Fields:
Translation:
HumansCells
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upSET, the Drosophila homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks. G3 (Bethesda). 2017 02 09; 7(2):625-635.
McElroy KA, Jung YL, Zee BM, Wang CI, Park PJ, Kuroda MI. PMID: 28064188; PMCID: PMC5295607.
View in:
PubMed Mentions:
8 Fields:
Translation:
HumansAnimalsCells
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SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation. Nat Genet. 2017 Feb; 49(2):289-295.
Wang X, Lee RS, Alver BH, Haswell JR, Wang S, Mieczkowski J, Drier Y, Gillespie SM, Archer TC, Wu JN, Tzvetkov EP, Troisi EC, Pomeroy SL, Biegel JA, Tolstorukov MY, Bernstein BE, Park PJ, Roberts CW. PMID: 27941797; PMCID: PMC5285474.
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PubMed Mentions:
224 Fields:
Translation:
HumansCells
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The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts. PLoS Genet. 2016 10; 12(10):e1006385.
Saini N, Roberts SA, Klimczak LJ, Chan K, Grimm SA, Dai S, Fargo DC, Boyer JC, Kaufmann WK, Taylor JA, Lee E, Cortes-Ciriano I, Park PJ, Schurman SH, Malc EP, Mieczkowski PA, Gordenin DA. PMID: 27788131; PMCID: PMC5082821.
View in:
PubMed Mentions:
59 Fields:
Translation:
HumansCellsCTClinical Trials
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Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types. Genome Biol. 2016 06 03; 17(1):120.
Day DS, Zhang B, Stevens SM, Ferrari F, Larschan EN, Park PJ, Pu WT. PMID: 27259512; PMCID: PMC4893286.
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PubMed Mentions:
66 Fields:
Translation:
HumansAnimalsCells
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Analyzing Somatic Genome Rearrangements in Human Cancers by Using Whole-Exome Sequencing. Am J Hum Genet. 2016 05 05; 98(5):843-856.
Yang L, Lee MS, Lu H, Oh DY, Kim YJ, Park D, Park G, Ren X, Bristow CA, Haseley PS, Lee S, Pantazi A, Kucherlapati R, Park WY, Scott KL, Choi YL, Park PJ. PMID: 27153396; PMCID: PMC4863662.
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PubMed Mentions:
28 Fields:
Translation:
HumansAnimalsCells
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Multilevel Genomics-Based Taxonomy of Renal Cell Carcinoma. Cell Rep. 2016 Mar 15; 14(10):2476-89.
Chen F, Zhang Y, Senbabaoglu Y, Ciriello G, Yang L, Reznik E, Shuch B, Micevic G, De Velasco G, Shinbrot E, Noble MS, Lu Y, Covington KR, Xi L, Drummond JA, Muzny D, Kang H, Lee J, Tamboli P, Reuter V, Shelley CS, Kaipparettu BA, Bottaro DP, Godwin AK, Gibbs RA, Getz G, Kucherlapati R, Park PJ, Sander C, Henske EP, Zhou JH, Kwiatkowski DJ, Ho TH, Choueiri TK, Hsieh JJ, Akbani R, Mills GB, Hakimi AA, Wheeler DA, Creighton CJ. PMID: 26947078; PMCID: PMC4794376.
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PubMed Mentions:
220 Fields:
Translation:
HumansCells
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The histone chaperone CAF-1 safeguards somatic cell identity. Nature. 2015 Dec 10; 528(7581):218-24.
Cheloufi S, Elling U, Hopfgartner B, Jung YL, Murn J, Ninova M, Hubmann M, Badeaux AI, Euong Ang C, Tenen D, Wesche DJ, Abazova N, Hogue M, Tasdemir N, Brumbaugh J, Rathert P, Jude J, Ferrari F, Blanco A, Fellner M, Wenzel D, Zinner M, Vidal SE, Bell O, Stadtfeld M, Chang HY, Almouzni G, Lowe SW, Rinn J, Wernig M, Aravin A, Shi Y, Park PJ, Penninger JM, Zuber J, Hochedlinger K. PMID: 26659182; PMCID: PMC4866648.
View in:
PubMed Mentions:
159 Fields:
Translation:
AnimalsCells
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Intron retention is a widespread mechanism of tumor-suppressor inactivation. Nat Genet. 2015 Nov; 47(11):1242-8.
Jung H, Lee D, Lee J, Park D, Kim YJ, Park WY, Hong D, Park PJ, Lee E. PMID: 26437032.
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PubMed Mentions:
214 Fields:
Translation:
HumansCells
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Hallmarks of pluripotency. Nature. 2015 Sep 24; 525(7570):469-78.
De Los Angeles A, Ferrari F, Xi R, Fujiwara Y, Benvenisty N, Deng H, Hochedlinger K, Jaenisch R, Lee S, Leitch HG, Lensch MW, Lujan E, Pei D, Rossant J, Wernig M, Park PJ, Daley GQ. PMID: 26399828.
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PubMed Mentions:
192 Fields:
Translation:
HumansAnimalsCells
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Failure to replicate the STAP cell phenomenon. Nature. 2015 Sep 24; 525(7570):E6-9.
De Los Angeles A, Ferrari F, Fujiwara Y, Mathieu R, Lee S, Lee S, Tu HC, Ross S, Chou S, Nguyen M, Wu Z, Theunissen TW, Powell BE, Imsoonthornruksa S, Chen J, Borkent M, Krupalnik V, Lujan E, Wernig M, Hanna JH, Hochedlinger K, Pei D, Jaenisch R, Deng H, Orkin SH, Park PJ, Daley GQ. PMID: 26399835.
View in:
PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
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Sex comb on midleg (Scm) is a functional link between PcG-repressive complexes in Drosophila. Genes Dev. 2015 Jun 01; 29(11):1136-50.
Kang H, McElroy KA, Jung YL, Alekseyenko AA, Zee BM, Park PJ, Kuroda MI. PMID: 26063573; PMCID: PMC4470282.
View in:
PubMed Mentions:
51 Fields:
Translation:
AnimalsCells
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Robust optimization in intensity-modulated proton therapy to account for anatomy changes in lung cancer patients. Radiother Oncol. 2015 Mar; 114(3):367-72.
Li H, Zhang X, Park P, Liu W, Chang J, Liao Z, Frank S, Li Y, Poenisch F, Mohan R, Gillin M, Zhu R. PMID: 25708992; PMCID: PMC4400219.
View in:
PubMed Mentions:
35 Fields:
Translation:
Humans
-
Genome-Wide Analysis of Wilms' Tumor 1-Controlled Gene Expression in Podocytes Reveals Key Regulatory Mechanisms. J Am Soc Nephrol. 2015 Sep; 26(9):2097-104.
Kann M, Ettou S, Jung YL, Lenz MO, Taglienti ME, Park PJ, Schermer B, Benzing T, Kreidberg JA. PMID: 25636411; PMCID: PMC4552122.
View in:
PubMed Mentions:
66 Fields:
Translation:
AnimalsCells
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Characterization of HPV and host genome interactions in primary head and neck cancers. Proc Natl Acad Sci U S A. 2014 Oct 28; 111(43):15544-9.
Parfenov M, Pedamallu CS, Gehlenborg N, Freeman SS, Danilova L, Bristow CA, Lee S, Hadjipanayis AG, Ivanova EV, Wilkerson MD, Protopopov A, Yang L, Seth S, Song X, Tang J, Ren X, Zhang J, Pantazi A, Santoso N, Xu AW, Mahadeshwar H, Wheeler DA, Haddad RI, Jung J, Ojesina AI, Issaeva N, Yarbrough WG, Hayes DN, Grandis JR, El-Naggar AK, Meyerson M, Park PJ, Chin L, Seidman JG, Hammerman PS, Kucherlapati R, Cancer Genome Atlas Network. PMID: 25313082; PMCID: PMC4217452.
View in:
PubMed Mentions:
237 Fields:
Translation:
HumansCells
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Evaluation of the systematic error in using 3D dose calculation in scanning beam proton therapy for lung cancer. J Appl Clin Med Phys. 2014 Sep 08; 15(5):4810.
Li H, Liu W, Park P, Matney J, Liao Z, Chang J, Zhang X, Li Y, Zhu RX. PMID: 25207565; PMCID: PMC4161985.
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PubMed Mentions:
6 Fields:
Translation:
Humans
-
Comparative analysis of metazoan chromatin organization. Nature. 2014 Aug 28; 512(7515):449-52.
Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ. PMID: 25164756; PMCID: PMC4227084.
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PubMed Mentions:
225 Fields:
Translation:
HumansAnimalsCells
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Comparative analysis of the transcriptome across distant species. Nature. 2014 Aug 28; 512(7515):445-8.
Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, Alver BH, Auerbach R, Bell K, Bickel PJ, Boeck ME, Boley NP, Booth BW, Cherbas L, Cherbas P, Di C, Dobin A, Drenkow J, Ewing B, Fang G, Fastuca M, Feingold EA, Frankish A, Gao G, Good PJ, Guigó R, Hammonds A, Harrow J, Hoskins RA, Howald C, Hu L, Huang H, Hubbard TJ, Huynh C, Jha S, Kasper D, Kato M, Kaufman TC, Kitchen RR, Ladewig E, Lagarde J, Lai E, Leng J, Lu Z, MacCoss M, May G, McWhirter R, Merrihew G, Miller DM, Mortazavi A, Murad R, Oliver B, Olson S, Park PJ, Pazin MJ, Perrimon N, Pervouchine D, Reinke V, Reymond A, Robinson G, Samsonova A, Saunders GI, Schlesinger F, Sethi A, Slack FJ, Spencer WC, Stoiber MH, Strasbourger P, Tanzer A, Thompson OA, Wan KH, Wang G, Wang H, Watkins KL, Wen J, Wen K, Xue C, Yang L, Yip K, Zaleski C, Zhang Y, Zheng H, Brenner SE, Graveley BR, Celniker SE, Gingeras TR, Waterston R. PMID: 25164755; PMCID: PMC4155737.
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PubMed Mentions:
169 Fields:
Translation:
HumansAnimalsCells
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The somatic genomic landscape of chromophobe renal cell carcinoma. Cancer Cell. 2014 Sep 08; 26(3):319-330.
Davis CF, Ricketts CJ, Wang M, Yang L, Cherniack AD, Shen H, Buhay C, Kang H, Kim SC, Fahey CC, Hacker KE, Bhanot G, Gordenin DA, Chu A, Gunaratne PH, Biehl M, Seth S, Kaipparettu BA, Bristow CA, Donehower LA, Wallen EM, Smith AB, Tickoo SK, Tamboli P, Reuter V, Schmidt LS, Hsieh JJ, Choueiri TK, Hakimi AA, The Cancer Genome Atlas Research Network, Chin L, Meyerson M, Kucherlapati R, Park WY, Robertson AG, Laird PW, Henske EP, Kwiatkowski DJ, Park PJ, Morgan M, Shuch B, Muzny D, Wheeler DA, Linehan WM, Gibbs RA, Rathmell WK, Creighton CJ. PMID: 25155756; PMCID: PMC4160352.
View in:
PubMed Mentions:
440 Fields:
Translation:
HumansCells
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Impact of sequencing depth in ChIP-seq experiments. Nucleic Acids Res. 2014 May; 42(9):e74.
Jung YL, Luquette LJ, Ho JW, Ferrari F, Tolstorukov M, Minoda A, Issner R, Epstein CB, Karpen GH, Kuroda MI, Park PJ. PMID: 24598259; PMCID: PMC4027199.
View in:
PubMed Mentions:
44 Fields:
Translation:
HumansAnimalsCells
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Dosimetric benefits of robust treatment planning for intensity modulated proton therapy for base-of-skull cancers. Pract Radiat Oncol. 2014 Nov-Dec; 4(6):384-91.
Liu W, Mohan R, Park P, Liu Z, Li H, Li X, Li Y, Wu R, Sahoo N, Dong L, Zhu XR, Grosshans DR. PMID: 25407859; PMCID: PMC4238033.
View in:
PubMed Mentions:
37 Fields:
Translation:
Humans
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Patient-specific quantification of respiratory motion-induced dose uncertainty for step-and-shoot IMRT of lung cancer. Med Phys. 2013 Dec; 40(12):121712.
Li H, Park P, Liu W, Matney J, Liao Z, Balter P, Li Y, Zhang X, Li X, Zhu XR. PMID: 24320498; PMCID: PMC3843761.
View in:
PubMed Mentions:
7 Fields:
Translation:
Humans
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Subacute toxicity of chitosan oligosaccharide in Sprague-Dawley rats. Arzneimittelforschung. 2001 Sep; 51(9):769-74.
Kim SK, Park PJ, Yang HP, Han SS. PMID: 11642011.
View in:
PubMed Mentions:
14 Fields:
Translation:
Animals
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Angiotensin I converting enzyme inhibitory peptides purified from bovine skin gelatin hydrolysate. J Agric Food Chem. 2001 Jun; 49(6):2992-7.
Kim SK, Byun HG, Park PJ, Shahidi F. PMID: 11409999.
View in:
PubMed Mentions:
22 Fields:
Translation:
Animals