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Richard Michelmore

TitlePROF-FY
InstitutionUniversity of California Davis
DepartmentUC DAVIS GENOME CENTER
Address4311 GBSF
CA 95616
Phone530-752-1729
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Michelmore R, Coaker G, Bart R, Beattie G, Bent A, Bruce T, Cameron D, Dangl J, Dinesh-Kumar S, Edwards R, Eves-van den Akker S, Gassmann W, Greenberg JT, Hanley-Bowdoin L, Harrison RJ, Harvey J, He P, Huffaker A, Hulbert S, Innes R, Jones JDG, Kaloshian I, Kamoun S, Katagiri F, Leach J, Ma W, McDowell J, Medford J, Meyers B, Nelson R, Oliver R, Qi Y, Saunders D, Shaw M, Smart C, Subudhi P, Torrance L, Tyler B, Valent B, Walsh J. Foundational and Translational Research Opportunities to Improve Plant Health. Mol Plant Microbe Interact. 2017 Jul; 30(7):515-516. PMID: 28398839.
      View in: PubMed
    2. Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, Cox K, Korf I, Meyers BC, Michelmore R. Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. Nat Commun. 2017 Apr 12; 8:14953. PMID: 28401891.
      View in: PubMed
    3. Kunjeti SG, Anchieta A, Martin FN, Choi YJ, Thines M, Michelmore R, Koike ST, Tsuchida C, Mahaffee W, Subbarao KV, Klosterman SJ. Detection and Quantification of Bremia lactucae by Spore Trapping and Quantitative PCR. Phytopathology. 2016 11; 106(11):1426-1437. PMID: 27392175.
      View in: PubMed
    4. Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nat Genet. 2016 Apr; 48(4):438-46. PMID: 26901068.
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    5. Scaglione D, Reyes-Chin-Wo S, Acquadro A, Froenicke L, Portis E, Beitel C, Tirone M, Mauro R, Lo Monaco A, Mauromicale G, Faccioli P, Cattivelli L, Rieseberg L, Michelmore R, Lanteri S. The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny. Sci Rep. 2016 Jan 20; 6:19427. PMID: 26786968; PMCID: PMC4726258.
    6. Yoong FY, O'Brien LK, Truco MJ, Huo H, Sideman R, Hayes R, Michelmore R, Bradford KJ. Genetic Variation for Thermotolerance in Lettuce Seed Germination Is Associated with Temperature-Sensitive Regulation of ETHYLENE RESPONSE FACTOR1 (ERF1). Plant Physiol. 2016 Jan; 170(1):472-88. PMID: 26574598; PMCID: PMC4704578.
    7. Derevnina L, Chin-Wo-Reyes S, Martin F, Wood K, Froenicke L, Spring O, Michelmore R. Genome Sequence and Architecture of the Tobacco Downy Mildew Pathogen Peronospora tabacina. Mol Plant Microbe Interact. 2015 Nov; 28(11):1198-215. PMID: 26196322.
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    8. Christopoulou M, Wo SR, Kozik A, McHale LK, Truco MJ, Wroblewski T, Michelmore R. Genome-Wide Architecture of Disease Resistance Genes in Lettuce. G3 (Bethesda). 2015 Oct 08; 5(12):2655-69. PMID: 26449254; PMCID: PMC4683639.
    9. Hill T, Ashrafi H, Chin-Wo SR, Stoffel K, Truco MJ, Kozik A, Michelmore R, Van Deynze A. Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species. G3 (Bethesda). 2015 Sep 08; 5(11):2341-55. PMID: 26355020; PMCID: PMC4632054.
    10. Simko I, Ochoa OE, Pel MA, Tsuchida C, Font I Forcada C, Hayes RJ, Truco MJ, Antonise R, Galeano CH, Michelmore R. Resistance to Downy Mildew in Lettuce 'La Brillante' is Conferred by Dm50 Gene and Multiple QTL. Phytopathology. 2015 Sep; 105(9):1220-8. PMID: 25915441.
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    11. Christopoulou M, McHale LK, Kozik A, Reyes-Chin Wo S, Wroblewski T, Michelmore R. Dissection of Two Complex Clusters of Resistance Genes in Lettuce (Lactuca sativa). Mol Plant Microbe Interact. 2015 Jul; 28(7):751-65. PMID: 25650829.
      View in: PubMed
    12. Govindarajulu M, Epstein L, Wroblewski T, Michelmore R. Host-induced gene silencing inhibits the biotrophic pathogen causing downy mildew of lettuce. Plant Biotechnol J. 2015 Sep; 13(7):875-83. PMID: 25487781.
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    13. Wroblewski T, Matvienko M, Piskurewicz U, Xu H, Martineau B, Wong J, Govindarajulu M, Kozik A, Michelmore R. Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis. RNA. 2014 Dec; 20(12):1987-99. PMID: 25344399; PMCID: PMC4238362.
    14. Beitel CW, Froenicke L, Lang JM, Korf IF, Michelmore R, Eisen JA, Darling AE. Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products. PeerJ. 2014; 2:e415. PMID: 24918035; PMCID: PMC4045339.
    15. Nandety RS, Caplan JL, Cavanaugh K, Perroud B, Wroblewski T, Michelmore R, Meyers BC. The role of TIR-NBS and TIR-X proteins in plant basal defense responses. Plant Physiol. 2013 Jul; 162(3):1459-72. PMID: 23735504; PMCID: PMC3707564.
    16. Michelmore R, Christopoulou M, Caldwell KS. Impacts of resistance gene genetics, function, and evolution on a durable future. Annu Rev Phytopathol. 2013; 51:291-319. PMID: 23682913.
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    17. Truco MJ, Ashrafi H, Kozik A, van Leeuwen H, Bowers J, Wo SR, Stoffel K, Xu H, Hill T, Van Deynze A, Michelmore R. An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce. G3 (Bethesda). 2013 04 09; 3(4):617-631. PMID: 23550116.
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    18. Matvienko M, Kozik A, Froenicke L, Lavelle D, Martineau B, Perroud B, Michelmore R. Consequences of normalizing transcriptomic and genomic libraries of plant genomes using a duplex-specific nuclease and tetramethylammonium chloride. PLoS One. 2013; 8(2):e55913. PMID: 23409088; PMCID: PMC3568094.
    19. Hayes RJ, McHale LK, Vallad GE, Truco MJ, Michelmore R, Klosterman SJ, Maruthachalam K, Subbarao KV. The inheritance of resistance to Verticillium wilt caused by race 1 isolates of Verticillium dahliae in the lettuce cultivar La Brillante. Theor Appl Genet. 2011 Aug; 123(4):509-17. PMID: 21567237.
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    20. Luo Y, Caldwell KS, Wroblewski T, Wright ME, Michelmore R. Proteolysis of a negative regulator of innate immunity is dependent on resistance genes in tomato and Nicotiana benthamiana and induced by multiple bacterial effectors. Plant Cell. 2009 Aug; 21(8):2458-72. PMID: 19671880; PMCID: PMC2751963.
    21. Wroblewski T, Caldwell KS, Piskurewicz U, Cavanaugh KA, Xu H, Kozik A, Ochoa O, McHale LK, Lahre K, Jelenska J, Castillo JA, Blumenthal D, Vinatzer BA, Greenberg JT, Michelmore R. Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia. Plant Physiol. 2009 Aug; 150(4):1733-49. PMID: 19571308.
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    22. Caldwell KS, Michelmore R. Arabidopsis thaliana genes encoding defense signaling and recognition proteins exhibit contrasting evolutionary dynamics. Genetics. 2009 Feb; 181(2):671-84. PMID: 19064707; PMCID: PMC2644955.
    23. McHale LK, Truco MJ, Kozik A, Wroblewski T, Ochoa OE, Lahre KA, Knapp SJ, Michelmore R. The genomic architecture of disease resistance in lettuce. Theor Appl Genet. 2009 Feb; 118(3):565-80. PMID: 19005638.
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    24. Pignatta D, Dilkes B, Wroblewski T, Michelmore R, Comai L. Transgene-induced gene silencing is not affected by a change in ploidy level. PLoS One. 2008 Aug 26; 3(8):e3061. PMID: 18725969; PMCID: PMC2516530.
    25. Tomilov AA, Tomilova NB, Wroblewski T, Michelmore R, Yoder JI. Trans-specific gene silencing between host and parasitic plants. Plant J. 2008 Nov; 56(3):389-97. PMID: 18643992.
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    26. Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore R, Knapp SJ. Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics. 2008 Aug; 280(2):111-25. PMID: 18553106.
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    27. Adams-Phillips L, Wan J, Tan X, Dunning FM, Meyers BC, Michelmore R, Bent AF. Discovery of ADP-ribosylation and other plant defense pathway elements through expression profiling of four different Arabidopsis-Pseudomonas R-avr interactions. Mol Plant Microbe Interact. 2008 May; 21(5):646-57. PMID: 18393624.
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    28. Kuang H, van Eck HJ, Sicard D, Michelmore R, Nevo E. Evolution and genetic population structure of prickly lettuce (Lactuca serriola) and its RGC2 resistance gene cluster. Genetics. 2008 Mar; 178(3):1547-58. PMID: 18385115; PMCID: PMC2278093.
    29. Kuang H, Caldwell KS, Meyers BC, Michelmore R. Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. Plant J. 2008 Apr; 54(1):69-80. PMID: 18182023.
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    30. Chen J, Agrawal V, Rattray M, West MA, St Clair DA, Michelmore R, Coughlan SJ, Meyers BC. A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics. 2007 Nov 12; 8:414. PMID: 17997849; PMCID: PMC2190774.
    31. Tan X, Meyers BC, Kozik A, West MA, Morgante M, St Clair DA, Bent AF, Michelmore R. Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. BMC Plant Biol. 2007 Oct 23; 7:56. PMID: 17956627; PMCID: PMC2175511.
    32. van Leeuwen H, Kliebenstein DJ, West MA, Kim K, van Poecke R, Katagiri F, Michelmore R, Doerge RW, St Clair DA. Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. Plant Cell. 2007 Jul; 19(7):2099-110. PMID: 17630278; PMCID: PMC1955704.
    33. Wroblewski T, Piskurewicz U, Tomczak A, Ochoa O, Michelmore R. Silencing of the major family of NBS-LRR-encoding genes in lettuce results in the loss of multiple resistance specificities. Plant J. 2007 Sep; 51(5):803-18. PMID: 17587302.
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    34. Rose LE, Michelmore R, Langley CH. Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon). II. Population genetics of Pto. Genetics. 2007 Mar; 175(3):1307-19. PMID: 17179076; PMCID: PMC1840093.
    35. Kuang H, Ochoa OE, Nevo E, Michelmore R. The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions at the RGC2 locus. Plant J. 2006 Jul; 47(1):38-48. PMID: 16762035.
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    36. West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore R. High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res. 2006 Jun; 16(6):787-95. PMID: 16702412; PMCID: PMC1473188.
    37. McHale L, Tan X, Koehl P, Michelmore R. Plant NBS-LRR proteins: adaptable guards. Genome Biol. 2006; 7(4):212. PMID: 16677430; PMCID: PMC1557992.
    38. Rose LE, Langley CH, Bernal AJ, Michelmore R. Natural variation in the Pto pathogen resistance gene within species of wild tomato (Lycopersicon). I. Functional analysis of Pto alleles. Genetics. 2005 Sep; 171(1):345-57. PMID: 15944360; PMCID: PMC1456525.
    39. Bernal AJ, Pan Q, Pollack J, Rose L, Kozik A, Willits N, Luo Y, Guittet M, Kochetkova E, Michelmore R. Functional analysis of the plant disease resistance gene Pto using DNA shuffling. J Biol Chem. 2005 Jun 17; 280(24):23073-83. PMID: 15790558.
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    40. Wroblewski T, Tomczak A, Michelmore R. Optimization of Agrobacterium-mediated transient assays of gene expression in lettuce, tomato and Arabidopsis. Plant Biotechnol J. 2005 Mar; 3(2):259-73. PMID: 17173625.
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    41. Kuang H, Woo SS, Meyers BC, Nevo E, Michelmore R. Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell. 2004 Nov; 16(11):2870-94. PMID: 15494555; PMCID: PMC527186.
    42. Rose LE, Bittner-Eddy PD, Langley CH, Holub EB, Michelmore R, Beynon JL. The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana. Genetics. 2004 Mar; 166(3):1517-27. PMID: 15082565; PMCID: PMC1470773.
    43. Michelmore R. The impact zone: genomics and breeding for durable disease resistance. Curr Opin Plant Biol. 2003 Aug; 6(4):397-404. PMID: 12873536.
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    44. Sicard D, Legg E, Brown S, Babu NK, Ochoa O, Sudarshana P, Michelmore R. A genetic map of the lettuce downy mildew pathogen, Bremia lactucae, constructed from molecular markers and avirulence genes. Fungal Genet Biol. 2003 Jun; 39(1):16-30. PMID: 12742060.
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    45. Meyers BC, Kozik A, Griego A, Kuang H, Michelmore R. Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell. 2003 Apr; 15(4):809-34. PMID: 12671079; PMCID: PMC152331.
    46. Meyers BC, Morgante M, Michelmore R. TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J. 2002 Oct; 32(1):77-92. PMID: 12366802.
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    47. Mondragón-Palomino M, Meyers BC, Michelmore R, Gaut BS. Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res. 2002 Sep; 12(9):1305-15. PMID: 12213767; PMCID: PMC186657.
    48. Chang JH, Tai YS, Bernal AJ, Lavelle DT, Staskawicz BJ, Michelmore R. Functional analyses of the Pto resistance gene family in tomato and the identification of a minor resistance determinant in a susceptible haplotype. Mol Plant Microbe Interact. 2002 Mar; 15(3):281-91. PMID: 11952131.
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    49. Shen KA, Chin DB, Arroyo-Garcia R, Ochoa OE, Lavelle DO, Wroblewski T, Meyers BC, Michelmore R. Dm3 is one member of a large constitutively expressed family of nucleotide binding site-leucine-rich repeat encoding genes. Mol Plant Microbe Interact. 2002 Mar; 15(3):251-61. PMID: 11952128.
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    50. Michelmore R. Genomic approaches to plant disease resistance. Curr Opin Plant Biol. 2000 Apr; 3(2):125-31. PMID: 10712954.
      View in: PubMed
    51. Michelmore R, Meyers BC. Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res. 1998 Nov; 8(11):1113-30. PMID: 9847076.
      View in: PubMed
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