David A Liem

Title(s)Associate Adjunct Professor, MED: Int Med Cardiology (Davis)
SchoolSchool of Medicine
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    1. Text phrase-mining in identifying and classifying maternal proteins and genes across preeclampsia and similar pathologies. Physiol Rep. 2025 Mar; 13(6):e70262. Urdang JG, Masters S, Edokobi N, Mukherjee C, Quazi A, Liem DA, Ahrens M, Wang X, Whitham M. PMID: 40102640; PMCID: PMC11919630.
      View in: PubMed   Mentions:
    2. Associations of Left Atrial Volume Index to Left Ventricular Ejection Fraction Ratio with Clinical Outcomes in Transthyretin Cardiac Amyloidosis. J Cardiovasc Dev Dis. 2024 Nov 08; 11(11). Aleligne YK, Wilson MD, Cadeiras M, Gibson M, Jimenez S, Yala S, Acevedo PE, Liem DA, Bidwell JT, Ebong IA. PMID: 39590206; PMCID: PMC11594689.
      View in: PubMed   Mentions:
    3. Association of Neighborhood and Environmental Factors With Clinical Phenotypes and Outcomes in Heart Failure With Preserved Ejection Fraction. Circ Res. 2024 Jun 21; 135(1):155-158. Liem DA, Silva H, Romero E, Rocha P, Acevedo PE, Izu MR, Ballal A, Soroya M, López JE, Nuno MA, Quazi A, Mukherjee C, Linklater W, Ebong I, Zhang XD, Izu LT, Sirish P, Chiamvimonvat N, Cadeiras M. PMID: 38759107; PMCID: PMC11189721.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    4. Genetic ablation of Lmp2 increases the susceptibility for impaired cardiac function. Front Mol Biosci. 2024; 11:1148948. Trogisch FA, Koser F, Michel S, Liem DA, Florea BI, Hecker M, Drews O. PMID: 38516190; PMCID: PMC10955435.
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    5. Clinical, Echocardiographic, and Longitudinal Characteristics Associated With Heart Failure With Improved Ejection Fraction. Am J Cardiol. 2024 01 15; 211:143-152. Romero E, Baltodano AF, Rocha P, Sellers-Porter C, Patel DJ, Soroya S, Bidwell J, Ebong I, Gibson M, Liem DA, Jimenez S, Bang H, Sirish P, Chiamvimonvat N, Lopez JE, Cadeiras M. PMID: 37923155; PMCID: PMC10869234.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    6. Clinical, Echocardiographic, and Longitudinal Characteristics Associated with Heart Failure with Improved Ejection Fraction. medRxiv. 2023 Aug 28. Romero E, Baltodano AF, Rocha P, Sellers-Porter C, Patel DJ, Soroya S, Bidwell J, Ebong I, Gibson M, Liem DA, Jimenez S, Bang H, Sirish P, Chiamvimonvat N, Lopez JE, Cadeiras M. PMID: 37693424; PMCID: PMC10491272.
      View in: PubMed   Mentions:
    7. Remote monitoring titration clinic to implement guideline-directed therapy for heart failure patients with reduced ejection fraction: a pilot quality-improvement intervention. Front Cardiovasc Med. 2023; 10:1202615. Romero E, Yala S, Sellers-Porter C, Lynch G, Mwathi V, Hellier Y, Goldman S, Rocha P, Fine JR, Liem D, Bidwell JT, Ebong I, Gibson M, Cadeiras M. PMID: 37404735; PMCID: PMC10316022.
      View in: PubMed   Mentions: 5  
    8. Unsupervised mRNA-seq classification of heart transplant endomyocardial biopsies. Clin Transplant. 2023 09; 37(9):e15011. Romero E, Tabak E, Fishbein G, Litovsky S, Tallaj J, Liem D, Bakir M, Khachatoorian Y, Piening B, Keating B, Deng M, Cadeiras M. PMID: 37151104; PMCID: PMC10524567.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Insights and perspectives into clinical biomarker discovery in pediatric heart failure and congenital heart disease-a narrative review. Cardiovasc Diagn Ther. 2023 Feb 28; 13(1):83-99. Liem DA, Cadeiras M, Setty SP. PMID: 36864972; PMCID: PMC9971290.
      View in: PubMed   Mentions: 3  
    10. Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications. J Vis Exp. 2019 02 23; (144). Sigdel D, Kyi V, Zhang A, Setty SP, Liem DA, Shi Y, Wang X, Shen J, Wang W, Han J, Ping P. PMID: 30855564; PMCID: PMC7075490.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    11. A reference set of curated biomedical data and metadata from clinical case reports. Sci Data. 2018 11 20; 5:180258. Caufield JH, Zhou Y, Garlid AO, Setty SP, Liem DA, Cao Q, Lee JM, Murali S, Spendlove S, Wang W, Zhang L, Sun Y, Bui A, Hermjakob H, Watson KE, Ping P. PMID: 30457569; PMCID: PMC6244181.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    12. A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts. J Vis Exp. 2018 09 20; (139). Caufield JH, Liem DA, Garlid AO, Zhou Y, Watson K, Bui AAT, Wang W, Ping P. PMID: 30295669; PMCID: PMC6235242.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    13. Quantitative temporal analysis of protein dynamics in cardiac remodeling. J Mol Cell Cardiol. 2018 08; 121:163-172. McClatchy DB, Ma Y, Liem DA, Ng DCM, Ping P, Yates JR. PMID: 30009778; PMCID: PMC6239217.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    14. Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease. Am J Physiol Heart Circ Physiol. 2018 10 01; 315(4):H910-H924. Liem DA, Murali S, Sigdel D, Shi Y, Wang X, Shen J, Choi H, Caufield JH, Wang W, Ping P, Han J. PMID: 29775406; PMCID: PMC6230912.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    15. Clinical phenomapping and outcomes after heart transplantation. J Heart Lung Transplant. 2018 08; 37(8):956-966. Bakir M, Jackson NJ, Han SX, Bui A, Chang E, Liem DA, Ardehali A, Ardehali R, Baas AS, Press MC, Cruz D, Deng MC, DePasquale EC, Fonarow GC, Khuu T, Kwon MH, Kubak BM, Nsair A, Phung JL, Reed EF, Schaenman JM, Shemin RJ, Zhang QJ, Tseng CH, Cadeiras M. PMID: 29802085; PMCID: PMC6064662.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    16. Integrated omics dissection of proteome dynamics during cardiac remodeling. Nat Commun. 2018 01 09; 9(1):120. Lau E, Cao Q, Lam MPY, Wang J, Ng DCM, Bleakley BJ, Lee JM, Liem DA, Wang D, Hermjakob H, Ping P. PMID: 29317621; PMCID: PMC5760723.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    17. Flow-Responsive Vascular Endothelial Growth Factor Receptor-Protein Kinase C Isoform Epsilon Signaling Mediates Glycolytic Metabolites for Vascular Repair. Antioxid Redox Signal. 2018 Jan 01; 28(1):31-43. Baek KI, Li R, Jen N, Choi H, Kaboodrangi A, Ping P, Liem D, Beebe T, Hsiai TK. PMID: 28762754; PMCID: PMC5695747.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    18. High-Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure. Circulation. 2017 Oct 24; 136(17):1613-1625. Rosa-Garrido M, Chapski DJ, Schmitt AD, Kimball TH, Karbassi E, Monte E, Balderas E, Pellegrini M, Shih TT, Soehalim E, Liem D, Ping P, Galjart NJ, Ren S, Wang Y, Ren B, Vondriska TM. PMID: 28802249; PMCID: PMC5648689.
      View in: PubMed   Mentions: 89     Fields:    Translation:AnimalsCells
    19. HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum. Gene. 2017 Jun 30; 618:14-23. Wang J, Lee J, Liem D, Ping P. PMID: 28286085; PMCID: PMC5632570.
      View in: PubMed   Mentions: 136     Fields:    Translation:HumansAnimalsCells
    20. A large dataset of protein dynamics in the mammalian heart proteome. Sci Data. 2016 Mar 15; 3:160015. Lau E, Cao Q, Ng DC, Bleakley BJ, Dincer TU, Bot BM, Wang D, Liem DA, Lam MP, Ge J, Ping P. PMID: 26977904; PMCID: PMC4792174.
      View in: PubMed   Mentions: 47     Fields:    Translation:AnimalsCells
    21. The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling. BMC Genomics. 2015 Jun 25; 16:475. Lindskog C, Linné J, Fagerberg L, Hallström BM, Sundberg CJ, Lindholm M, Huss M, Kampf C, Choi H, Liem DA, Ping P, Väremo L, Mardinoglu A, Nielsen J, Larsson E, Pontén F, Uhlén M. PMID: 26109061; PMCID: PMC4479346.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    22. Spatial and temporal dynamics of the cardiac mitochondrial proteome. Expert Rev Proteomics. 2015 Apr; 12(2):133-46. Lau E, Huang D, Cao Q, Dincer TU, Black CM, Lin AJ, Lee JM, Wang D, Liem DA, Lam MP, Ping P. PMID: 25752359; PMCID: PMC4721584.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    23. Isoflurane protects the myocardium against ischemic injury via the preservation of mitochondrial respiration and its supramolecular organization. Anesth Analg. 2015 Feb; 120(2):265-74. Lotz C, Zhang J, Fang C, Liem D, Ping P. PMID: 25383718.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    24. Characterization of human plasma proteome dynamics using deuterium oxide. Proteomics Clin Appl. 2014 Aug; 8(7-8):610-9. Wang D, Liem DA, Lau E, Ng DC, Bleakley BJ, Cadeiras M, Deng MC, Lam MP, Ping P. PMID: 24946186; PMCID: PMC4764616.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCTClinical Trials
    25. THY-1 receptor expression differentiates cardiosphere-derived cells with divergent cardiogenic differentiation potential. Stem Cell Reports. 2014 May 06; 2(5):576-91. Gago-Lopez N, Awaji O, Zhang Y, Ko C, Nsair A, Liem D, Stempien-Otero A, MacLellan WR. PMID: 24936447; PMCID: PMC4050474.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    26. Protein kinetic signatures of the remodeling heart following isoproterenol stimulation. J Clin Invest. 2014 Apr; 124(4):1734-44. Lam MP, Wang D, Lau E, Liem DA, Kim AK, Ng DC, Liang X, Bleakley BJ, Liu C, Tabaraki JD, Cadeiras M, Wang Y, Deng MC, Ping P. PMID: 24614109; PMCID: PMC3973111.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansAnimalsCells
    27. Molecular- and organelle-based predictive paradigm underlying recovery by left ventricular assist device support. Circ Heart Fail. 2014 Mar 01; 7(2):359-66. Liem DA, Nsair A, Setty SP, Cadeiras M, Wang D, Maclellan R, Lotz C, Lin AJ, Tabaraki J, Li H, Ge J, Odeberg J, Ponten F, Larson E, Mulder J, Lundberg E, Weiss JN, Uhlen M, Ping P, Deng MC. PMID: 24643888; PMCID: PMC4397259.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    28. Molecular basis of recovering on mechanical circulatory support. Heart Fail Clin. 2014 Jan; 10(1 Suppl):S57-62. Nsair A, Liem DA, Cadeiras M, Cheng RK, Allareddy M, Kwon M, Shemin R, Deng MC. PMID: 24262353.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    29. Characterization, design, and function of the mitochondrial proteome: from organs to organisms. J Proteome Res. 2014 Feb 07; 13(2):433-46. Lotz C, Lin AJ, Black CM, Zhang J, Lau E, Deng N, Wang Y, Zong NC, Choi JH, Xu T, Liem DA, Korge P, Weiss JN, Hermjakob H, Yates JR, Apweiler R, Ping P. PMID: 24070373; PMCID: PMC4076470.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimals
    30. Cyclophilin D and acetylation: a new link in cardiac signaling. Circ Res. 2013 Dec 06; 113(12):1268-9. Lam MP, Lau E, Liem DA, Ping P. PMID: 24311610; PMCID: PMC6791362.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    31. Regulation of acetylation restores proteolytic function of diseased myocardium in mouse and human. Mol Cell Proteomics. 2013 Dec; 12(12):3793-802. Wang D, Fang C, Zong NC, Liem DA, Cadeiras M, Scruggs SB, Yu H, Kim AK, Yang P, Deng M, Lu H, Ping P. PMID: 24037710; PMCID: PMC3861724.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    32. Integration of cardiac proteome biology and medicine by a specialized knowledgebase. Circ Res. 2013 Oct 12; 113(9):1043-53. Zong NC, Li H, Li H, Lam MP, Jimenez RC, Kim CS, Deng N, Kim AK, Choi JH, Zelaya I, Liem D, Meyer D, Odeberg J, Fang C, Lu HJ, Xu T, Weiss J, Duan H, Uhlen M, Yates JR, Apweiler R, Ge J, Hermjakob H, Ping P. PMID: 23965338; PMCID: PMC4076475.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimals
    33. Divergent mitochondrial biogenesis responses in human cardiomyopathy. Circulation. 2013 May 14; 127(19):1957-67. Ahuja P, Wanagat J, Wang Z, Wang Y, Liem DA, Ping P, Antoshechkin IA, Margulies KB, Maclellan WR. PMID: 23589024; PMCID: PMC4236313.
      View in: PubMed   Mentions: 49     Fields:    Translation:Humans
    34. Site-specific quantitative analysis of cardiac mitochondrial protein phosphorylation. J Proteomics. 2013 Apr 09; 81:15-23. Lam MP, Lau E, Scruggs SB, Wang D, Kim TY, Liem DA, Zhang J, Ryan CM, Faull KF, Ping P. PMID: 23022582; PMCID: PMC3593810.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    35. Metabolic labeling reveals proteome dynamics of mouse mitochondria. Mol Cell Proteomics. 2012 Dec; 11(12):1586-94. Kim TY, Wang D, Kim AK, Lau E, Lin AJ, Liem DA, Zhang J, Zong NC, Lam MP, Ping P. PMID: 22915825; PMCID: PMC3518123.
      View in: PubMed   Mentions: 90     Fields:    Translation:AnimalsCells
    36. Perspectives on: SGP symposium on mitochondrial physiology and medicine: mitochondrial proteome design: from molecular identity to pathophysiological regulation. J Gen Physiol. 2012 Jun; 139(6):395-406. Zhang J, Lin A, Powers J, Lam MP, Lotz C, Liem D, Lau E, Wang D, Deng N, Korge P, Zong NC, Cai H, Weiss J, Ping P. PMID: 22641634; PMCID: PMC3362520.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    37. New frontiers in myocardial protection: a systems biology approach. J Cardiovasc Pharmacol Ther. 2011 Sep-Dec; 16(3-4):285-9. Lotz C, Liem D, Ping P. PMID: 21821530.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    38. Differential regulation of proteasome function in isoproterenol-induced cardiac hypertrophy. Circ Res. 2010 Oct 29; 107(9):1094-101. Drews O, Tsukamoto O, Liem D, Streicher J, Wang Y, Ping P. PMID: 20814020; PMCID: PMC3360925.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    39. Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria. Mol Cell Proteomics. 2011 Feb; 10(2):M110.000117. Deng N, Zhang J, Zong C, Wang Y, Lu H, Yang P, Wang W, Young GW, Wang Y, Korge P, Lotz C, Doran P, Liem DA, Apweiler R, Weiss JN, Duan H, Ping P. PMID: 20495213; PMCID: PMC3033665.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    40. Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts. J Mol Cell Cardiol. 2009 Feb; 46(2):268-77. Mayr M, Liem D, Zhang J, Li X, Avliyakulov NK, Yang JI, Young G, Vondriska TM, Ladroue C, Madhu B, Griffiths JR, Gomes A, Xu Q, Ping P. PMID: 19027023; PMCID: PMC3661410.
      View in: PubMed   Mentions: 28     Fields:    
    41. Cyclin-dependent kinase 2 signaling regulates myocardial ischemia/reperfusion injury. J Mol Cell Cardiol. 2008 Nov; 45(5):610-6. Liem DA, Zhao P, Angelis E, Chan SS, Zhang J, Wang G, Berthet C, Kaldis P, Ping P, MacLellan WR. PMID: 18692063; PMCID: PMC2603425.
      View in: PubMed   Mentions: 14     Fields:    
    42. Altered proteome biology of cardiac mitochondria under stress conditions. J Proteome Res. 2008 Jun; 7(6):2204-14. Zhang J, Liem DA, Mueller M, Wang Y, Zong C, Deng N, Vondriska TM, Korge P, Drews O, Maclellan WR, Honda H, Weiss JN, Apweiler R, Ping P. PMID: 18484766; PMCID: PMC3805274.
      View in: PubMed   Mentions: 22     Fields:    
    43. Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria. Proteomics. 2008 Apr; 8(8):1564-75. Zhang J, Li X, Mueller M, Wang Y, Zong C, Deng N, Vondriska TM, Liem DA, Yang JI, Korge P, Honda H, Weiss JN, Apweiler R, Ping P. PMID: 18348319; PMCID: PMC2799225.
      View in: PubMed   Mentions: 39     Fields:    
    44. Ischemic preconditioning modulates mitochondrial respiration, irrespective of the employed signal transduction pathway. Transl Res. 2008 Jan; 151(1):17-26. Liem DA, Manintveld OC, Schoonderwoerd K, McFalls EO, Heinen A, Verdouw PD, Sluiter W, Duncker DJ. PMID: 18061124.
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    45. Past and present course of cardioprotection against ischemia-reperfusion injury. J Appl Physiol (1985). 2007 Dec; 103(6):2129-36. Liem DA, Honda HM, Zhang J, Woo D, Ping P. PMID: 17673563.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    46. Cardiovascular-related proteins identified in human plasma by the HUPO Plasma Proteome Project pilot phase. Proteomics. 2005 Aug; 5(13):3520-30. Berhane BT, Zong C, Liem DA, Huang A, Le S, Edmondson RD, Jones RC, Qiao X, Whitelegge JP, Ping P, Vondriska TM. PMID: 16052623.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    47. Exercise unmasks autonomic dysfunction in swine with a recent myocardial infarction. Cardiovasc Res. 2005 Mar 01; 65(4):889-96. Duncker DJ, Haitsma DB, Liem DA, Verdouw PD, Merkus D. PMID: 15721869.
      View in: PubMed   Mentions:
    48. Nitric oxide donors protect murine myocardium against infarction via modulation of mitochondrial permeability transition. Am J Physiol Heart Circ Physiol. 2005 Mar; 288(3):H1290-5. Wang G, Liem DA, Vondriska TM, Honda HM, Korge P, Pantaleon DM, Qiao X, Wang Y, Weiss JN, Ping P. PMID: 15528225.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    49. Myocardium tolerant to an adenosine-dependent ischemic preconditioning stimulus can still be protected by stimuli that employ alternative signaling pathways. Am J Physiol Heart Circ Physiol. 2005 Mar; 288(3):H1165-72. Liem DA, te Lintel Hekkert M, Manintveld OC, Boomsma F, Verdouw PD, Duncker DJ. PMID: 15486028.
      View in: PubMed   Mentions:
    50. The tyrosine phosphatase inhibitor bis(maltolato)oxovanadium attenuates myocardial reperfusion injury by opening ATP-sensitive potassium channels. J Pharmacol Exp Ther. 2004 Jun; 309(3):1256-62. Liem DA, Gho CC, Gho BC, Kazim S, Manintveld OC, Verdouw PD, Duncker DJ. PMID: 14993257.
      View in: PubMed   Mentions:
    51. Mitochondrial function: the heart of myocardial preservation. J Lab Clin Med. 2003 Sep; 142(3):141-8. McFalls EO, Liem D, Schoonderwoerd K, Lamers J, Sluiter W, Duncker D. PMID: 14532901.
      View in: PubMed   Mentions:
    52. Transient limb ischemia induces remote ischemic preconditioning in vivo. Circulation. 2003 Jun 24; 107(24):e218-9; author reply e218-9. Liem DA, Verdouw PD, Duncker DJ. PMID: 12821595.
      View in: PubMed   Mentions:
    53. Sites of action of adenosine in interorgan preconditioning of the heart. Am J Physiol Heart Circ Physiol. 2002 Jul; 283(1):H29-37. Liem DA, Verdouw PD, Ploeg H, Kazim S, Duncker DJ. PMID: 12063271.
      View in: PubMed   Mentions:
    54. Beneficial effects of the Ca2+ sensitizer EMD 57033 in exercising pigs with infarction-induced chronic left ventricular dysfunction. Br J Pharmacol. 2001 Oct; 134(3):553-62. Duncker DJ, Haitsma DB, Liem DA, Heins N, Stubenitsky R, Verdouw PD. PMID: 11588109; PMCID: PMC1572986.
      View in: PubMed   Mentions:
    55. Role of adenosine in ischemic preconditioning in rats depends critically on the duration of the stimulus and involves both A(1) and A(3) receptors. Cardiovasc Res. 2001 Sep; 51(4):701-8. Liem DA, van den Doel MA, de Zeeuw S, Verdouw PD, Duncker DJ. PMID: 11530103.
      View in: PubMed   Mentions:
    56. Monk seal mortality: virus or toxin? Vaccine. 1998 May-Jun; 16(9-10):979-81. Osterhaus A, van de Bildt M, Vedder L, Martina B, Niesters H, Vos J, van Egmond H, Liem D, Baumann R, Androukaki E, Kotomatas S, Komnenou A, Abou Sidi B, Jiddou AB, Barham ME. PMID: 9682347.
      View in: PubMed   Mentions:
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