Soichiro Yamada

Title(s)Associate Professor, Biomedical Engineering
SchoolCollege of Engineering
Address2317 GBSF
CA 95616
Phone530-754-7251
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    Collapse Research 
    Collapse Research Activities and Funding
    Identification of stretch-induced biotinylation at cadherin junctions
    NIH R03EB021636Jul 1, 2016 - Apr 30, 2018
    Role: Principal Investigator
    Cell adhesion mediated self-recognition
    NIH R01GM094798Sep 1, 2010 - Aug 31, 2015
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Inside-out regulation of E-cadherin conformation and adhesion. Proc Natl Acad Sci U S A. 2021 07 27; 118(30). Koirala R, Priest AV, Yen CF, Cheah JS, Pannekoek WJ, Gloerich M, Yamada S, Sivasankar S. PMID: 34301871; PMCID: PMC8325368.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    2. Condensation of pericentrin proteins in human cells illuminates phase separation in centrosome assembly. J Cell Sci. 2021 07 15; 134(14). Jiang X, Ho DBT, Mahe K, Mia J, Sepulveda G, Antkowiak M, Jiang L, Yamada S, Jao LE. PMID: 34308971; PMCID: PMC8349556.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    3. An asymmetric junctional mechanoresponse coordinates mitotic rounding with epithelial integrity. J Cell Biol. 2021 05 03; 220(5). Monster JL, Donker L, Vliem MJ, Win Z, Matthews HK, Cheah JS, Yamada S, de Rooij J, Baum B, Gloerich M. PMID: 33688935; PMCID: PMC7953256.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    4. Spatial proximity of proteins surrounding zyxin under force-bearing conditions. Mol Biol Cell. 2021 06 15; 32(13):1221-1228. Cheah JS, Jacobs KA, Lai TW, Caballelo R, Yee JL, Ueda S, Heinrich V, Yamada S. PMID: 33909446; PMCID: PMC8351546.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    5. Aquaporin water channels as regulators of cell-cell adhesion proteins. Am J Physiol Cell Physiol. 2021 05 01; 320(5):C771-C777. Edamana S, Login FH, Yamada S, Kwon TH, Nejsum LN. PMID: 33625928.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    6. Mapping transmembrane binding partners for E-cadherin ectodomains. Proc Natl Acad Sci U S A. 2020 12 08; 117(49):31157-31165. Shafraz O, Xie B, Yamada S, Sivasankar S. PMID: 33229577; PMCID: PMC7733791.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    7. Aquaporin-5 regulation of cell-cell adhesion proteins: an elusive "tail" story. Am J Physiol Cell Physiol. 2021 03 01; 320(3):C282-C292. Login FH, Palmfeldt J, Cheah JS, Yamada S, Nejsum LN. PMID: 33175575.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    8. Hyperactivity of Mek in TNS1 knockouts leads to potential treatments for cystic kidney diseases. Cell Death Dis. 2019 11 18; 10(12):871. Wu ZY, Chiu CL, Lo E, Lee YJ, Yamada S, Lo SH. PMID: 31740667; PMCID: PMC6861224.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    9. Force-induced recruitment of cten along keratin network in epithelial cells. Proc Natl Acad Sci U S A. 2019 10 01; 116(40):19799-19801. Cheah JS, Jacobs KA, Heinrich V, Lo SH, Yamada S. PMID: 31527270; PMCID: PMC6778260.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    10. A simple elution strategy for biotinylated proteins bound to streptavidin conjugated beads using excess biotin and heat. Biochem Biophys Res Commun. 2017 12 02; 493(4):1522-1527. Cheah JS, Yamada S. PMID: 28986262; PMCID: PMC5693302.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    11. Kinesin superfamily protein Kif26b links Wnt5a-Ror signaling to the control of cell and tissue behaviors in vertebrates. Elife. 2017 09 08; 6. Susman MW, Karuna EP, Kunz RC, Gujral TS, Cantú AV, Choi SS, Jong BY, Okada K, Scales MK, Hum J, Hu LS, Kirschner MW, Nishinakamura R, Yamada S, Laird DJ, Jao LE, Gygi SP, Greenberg ME, Ho HH. PMID: 28885975; PMCID: PMC5590807.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    12. Biochemical analysis of force-sensitive responses using a large-scale cell stretch device. Cell Adh Migr. 2017 Sep 03; 11(5-6):504-513. Renner DJ, Ewald ML, Kim T, Yamada S. PMID: 28129019; PMCID: PMC5810787.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    13. Deletion of the cytoplasmic domain of N-cadherin reduces, but does not eliminate, traction force-transmission. Biochem Biophys Res Commun. 2016 09 30; 478(4):1640-6. Lee E, Ewald ML, Sedarous M, Kim T, Weyers BW, Truong RH, Yamada S. PMID: 27596967; PMCID: PMC5030185.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    14. Initiation of Chondrocyte Self-Assembly Requires an Intact Cytoskeletal Network. Tissue Eng Part A. 2016 Feb; 22(3-4):318-25. Lee JK, Hu JC, Yamada S, Athanasiou KA. PMID: 26729374; PMCID: PMC4779322.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    15. Force dependent biotinylation of myosin IIA by α-catenin tagged with a promiscuous biotin ligase. PLoS One. 2015; 10(3):e0122886. Ueda S, Blee AM, Macway KG, Renner DJ, Yamada S. PMID: 25806963; PMCID: PMC4373798.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    16. Rho GTPases and the downstream effectors actin-related protein 2/3 (Arp2/3) complex and myosin II induce membrane fusion at self-contacts. J Biol Chem. 2015 Feb 06; 290(6):3238-47. Sumida GM, Yamada S. PMID: 25527498; PMCID: PMC4318998.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    17. Self-contact elimination by membrane fusion. Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47):18958-63. Sumida GM, Yamada S. PMID: 24191042; PMCID: PMC3839738.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    18. Myosin IIA deficient cells migrate efficiently despite reduced traction forces at cell periphery. Biol Open. 2013 Apr 15; 2(4):368-72. Jorrisch MH, Shih W, Yamada S. PMID: 23616920; PMCID: PMC3625864.
      View in: PubMed   Mentions: 24     Fields:    
    19. N-cadherin dependent collective cell invasion of prostate cancer cells is regulated by the N-terminus of α-catenin. PLoS One. 2013; 8(1):e55069. Cui Y, Yamada S. PMID: 23359820; PMCID: PMC3554680.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    20. N-cadherin as a key regulator of collective cell migration in a 3D environment. Cell Adh Migr. 2012 Nov-Dec; 6(6):513-7. Shih W, Yamada S. PMID: 23076138; PMCID: PMC3547896.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    21. The cargo of CRPPR-conjugated liposomes crosses the intact murine cardiac endothelium. J Control Release. 2012 Oct 10; 163(1):10-7. Zhang H, Li N, Sirish P, Mahakian L, Ingham E, Curry FR, Yamada S, Chiamvimonvat N, Ferrara KW. PMID: 22776291; PMCID: PMC3552610.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    22. Tandem zyxin LIM sequences do not enhance force sensitive accumulation. Biochem Biophys Res Commun. 2012 Jun 15; 422(4):653-7. Steele AN, Sumida GM, Yamada S. PMID: 22609203; PMCID: PMC3377793.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    23. N-cadherin-mediated cell-cell adhesion promotes cell migration in a three-dimensional matrix. J Cell Sci. 2012 Aug 01; 125(Pt 15):3661-70. Shih W, Yamada S. PMID: 22467866; PMCID: PMC3445327.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    24. E-cadherin plays an essential role in collective directional migration of large epithelial sheets. Cell Mol Life Sci. 2012 Aug; 69(16):2779-89. Li L, Hartley R, Reiss B, Sun Y, Pu J, Wu D, Lin F, Hoang T, Yamada S, Jiang J, Zhao M. PMID: 22410739; PMCID: PMC3459324.
      View in: PubMed   Mentions: 57     Fields:    Translation:AnimalsCells
    25. Live-cell imaging of migrating cells expressing fluorescently-tagged proteins in a three-dimensional matrix. J Vis Exp. 2011 Dec 22; (58). Shih W, Yamada S. PMID: 22215133; PMCID: PMC3369670.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    26. Myosin II activity dependent and independent vinculin recruitment to the sites of E-cadherin-mediated cell-cell adhesion. BMC Cell Biol. 2011 Nov 03; 12:48. Sumida GM, Tomita TM, Shih W, Yamada S. PMID: 22054176; PMCID: PMC3215179.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    27. The LIM domain of zyxin is sufficient for force-induced accumulation of zyxin during cell migration. Biophys J. 2011 Sep 07; 101(5):1069-75. Uemura A, Nguyen TN, Steele AN, Yamada S. PMID: 21889443; PMCID: PMC3164133.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    28. Single-cell adhesion tests against functionalized microspheres arrayed on AFM cantilevers confirm heterophilic E- and N-cadherin binding. Biophys J. 2010 Dec 15; 99(12):L100-2. Ounkomol C, Yamada S, Heinrich V. PMID: 21156120; PMCID: PMC3000485.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    29. Zyxin-mediated actin assembly is required for efficient wound closure. J Biol Chem. 2010 Nov 12; 285(46):35439-45. Nguyen TN, Uemura A, Shih W, Yamada S. PMID: 20801875; PMCID: PMC2975167.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    30. Myosin IIA dependent retrograde flow drives 3D cell migration. Biophys J. 2010 Apr 21; 98(8):L29-31. Shih W, Yamada S. PMID: 20409454; PMCID: PMC2856159.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    31. Biochemical and structural analysis of alpha-catenin in cell-cell contacts. Biochem Soc Trans. 2008 Apr; 36(Pt 2):141-7. Pokutta S, Drees F, Yamada S, Nelson WJ, Weis WI. PMID: 18363554; PMCID: PMC3369830.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    32. Localized zones of Rho and Rac activities drive initiation and expansion of epithelial cell-cell adhesion. J Cell Biol. 2007 Jul 30; 178(3):517-27. Yamada S, Nelson WJ. PMID: 17646397; PMCID: PMC2064836.
      View in: PubMed   Mentions: 224     Fields:    Translation:AnimalsCells
    33. Synapses: sites of cell recognition, adhesion, and functional specification. Annu Rev Biochem. 2007; 76:267-94. Yamada S, Nelson WJ. PMID: 17506641; PMCID: PMC3368613.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    34. Deconstructing the cadherin-catenin-actin complex. Cell. 2005 Dec 02; 123(5):889-901. Yamada S, Pokutta S, Drees F, Weis WI, Nelson WJ. PMID: 16325582; PMCID: PMC3368712.
      View in: PubMed   Mentions: 442     Fields:    Translation:AnimalsCells
    35. Alpha-catenin is a molecular switch that binds E-cadherin-beta-catenin and regulates actin-filament assembly. Cell. 2005 Dec 02; 123(5):903-15. Drees F, Pokutta S, Yamada S, Nelson WJ, Weis WI. PMID: 16325583; PMCID: PMC3369825.
      View in: PubMed   Mentions: 445     Fields:    Translation:AnimalsCells
    36. Self-organization of an acentrosomal microtubule network at the basal cortex of polarized epithelial cells. J Cell Biol. 2005 Dec 05; 171(5):845-55. Reilein A, Yamada S, Nelson WJ. PMID: 16314429; PMCID: PMC2171299.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    37. Interaction of cadherin with the actin cytoskeleton. Novartis Found Symp. 2005; 269:159-68; discussion 168-77, 223-30. Nelson WJ, Drees F, Yamada S. PMID: 16358407.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    38. Pairwise assembly determines the intrinsic potential for self-organization and mechanical properties of keratin filaments. Mol Biol Cell. 2002 Jan; 13(1):382-91. Yamada S, Wirtz D, Coulombe PA. PMID: 11809846; PMCID: PMC65095.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
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