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Viswanathan V Krishnan

Title(s)Adjunct Professor, Pathology and Laboratory Medicine
SchoolUniversity of California, Davis
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Singh J, Her C, Supekar N, Boons GJ, Krishnan VV, Brooks CL. Role of glycosylation on the ensemble of conformations in the MUC1 immunodominant epitope. J Pept Sci. 2019 Nov 14; e3229. PMID: 31729101.
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    2. Her C, Yeh Y, Krishnan VV. The Ensemble of Conformations of Antifreeze Glycoproteins (AFGP8): A Study Using Nuclear Magnetic Resonance Spectroscopy. Biomolecules. 2019 Jun 17; 9(6). PMID: 31213033.
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    3. Krishnan VV. Molecular Thermodynamics Using Nuclear Magnetic Resonance (NMR) Spectroscopy. Inventions (Basel). 2019 Mar; 4(1). PMID: 31123720.
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    4. Krishnan VV, Selvan SR, Parameswaran N, Venkateswaran N, Luciw PA, Venkateswaran KS. Proteomic profiles by multiplex microsphere suspension array. J Immunol Methods. 2018 10; 461:1-14. PMID: 30003895.
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    5. Her C, Singh J, Krishnan VV. Effect of sucralose on the enzyme kinetics of invertase using real-time NMR spectroscopy and progress curve analysis. Carbohydr Res. 2018 Jan 02; 455:5-9. PMID: 29127847.
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    6. Diaz-Parga P, Goto JJ, Krishnan VV. Chemistry and Chemical Equilibrium Dynamics of BMAA and Its Carbamate Adducts. Neurotox Res. 2018 Jan; 33(1):76-86. PMID: 28921378.
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    7. Reid KM, Sunanda P, Raghothama S, Krishnan VV. Ensemble characterization of an intrinsically disordered FG-Nup peptide and its F>A mutant in DMSO-d6. Biopolymers. 2017 Nov; 108(6). PMID: 28734076.
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    8. Jena PK, Sheng L, Liu HX, Kalanetra KM, Mirsoian A, Murphy WJ, French SW, Krishnan VV, Mills DA, Wan YY. Western Diet-Induced Dysbiosis in Farnesoid X Receptor Knockout Mice Causes Persistent Hepatic Inflammation after Antibiotic Treatment. Am J Pathol. 2017 Aug; 187(8):1800-1813. PMID: 28711154.
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    9. Sheng L, Jena PK, Liu HX, Kalanetra KM, Gonzalez FJ, French SW, Krishnan VV, Mills DA, Wan YY. Gender Differences in Bile Acids and Microbiota in Relationship with Gender Dissimilarity in Steatosis Induced by Diet and FXR Inactivation. Sci Rep. 2017 05 11; 7(1):1748. PMID: 28496104.
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    10. Khaliq A, Ravindran R, Hussainy SF, Krishnan VV, Ambreen A, Yusuf NW, Irum S, Rashid A, Jamil M, Zaffar F, Chaudhry MN, Gupta PK, Akhtar MW, Khan IH. Field evaluation of a blood based test for active tuberculosis in endemic settings. PLoS One. 2017; 12(4):e0173359. PMID: 28380055.
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    11. Ramage JG, Prentice KW, DePalma L, Venkateswaran KS, Chivukula S, Chapman C, Bell M, Datta S, Singh A, Hoffmaster A, Sarwar J, Parameswaran N, Joshi M, Thirunavkkarasu N, Krishnan V, Morse S, Avila JR, Sharma S, Estacio PL, Stanker L, Hodge DR, Pillai SP. Comprehensive Laboratory Evaluation of a Highly Specific Lateral Flow Assay for the Presumptive Identification of Bacillus anthracis Spores in Suspicious White Powders and Environmental Samples. Health Secur. 2016 Sep-Oct; 14(5):351-65. PMID: 27661796.
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    12. Lechpammer M, Tran YP, Wintermark P, Martínez-Cerdeño V, Krishnan VV, Ahmed W, Berman RF, Jensen FE, Nudler E, Zagzag D. Upregulation of cystathionine ß-synthase and p70S6K/S6 in neonatal hypoxic ischemic brain injury. Brain Pathol. 2017 07; 27(4):449-458. PMID: 27465493.
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    13. Zimmerman D, Goto JJ, Krishnan VV. Equilibrium Dynamics of ß-N-Methylamino-L-Alanine (BMAA) and Its Carbamate Adducts at Physiological Conditions. PLoS One. 2016; 11(8):e0160491. PMID: 27513925.
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    14. Kumar AV, Ali RF, Cao Y, Krishnan VV. Application of data mining tools for classification of protein structural class from residue based averaged NMR chemical shifts. Biochim Biophys Acta. 2015 Oct; 1854(10 Pt A):1545-52. PMID: 25758094.
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    15. Mani A, Ravindran R, Mannepalli S, Vang D, Luciw PA, Hogarth M, Khan IH, Krishnan VV. Data mining strategies to improve multiplex microbead immunoassay tolerance in a mouse model of infectious diseases. PLoS One. 2015; 10(1):e0116262. PMID: 25614982.
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    16. Krishnan VV, Ravindran R, Wun T, Luciw PA, Khan IH, Janatpour K. Multiplexed measurements of immunomodulator levels in peripheral blood of healthy subjects: Effects of analytical variables based on anticoagulants, age, and gender. Cytometry B Clin Cytom. 2014 Nov; 86(6):426-35. PMID: 24574151.
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    17. Ravindran R, Krishnan VV, Dhawan R, Wunderlich ML, Lerche NW, Flynn JL, Luciw PA, Khan IH. Plasma antibody profiles in non-human primate tuberculosis. J Med Primatol. 2014 Apr; 43(2):59-71. PMID: 24446897.
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    18. Heisel KA, Krishnan VV. NMR based solvent exchange experiments to understand the conformational preference of intrinsically disordered proteins using FG-nucleoporin peptide as a model. Biopolymers. 2014 Jan; 102(1):69-77. PMID: 24037535.
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    19. Ravindran R, Krishnan VV, Khanum A, Luciw PA, Khan IH. Exploratory study on plasma immunomodulator and antibody profiles in tuberculosis patients. Clin Vaccine Immunol. 2013 Aug; 20(8):1283-90. PMID: 23761664.
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    20. Krishnan VV, Murali N. Radiation damping in modern NMR experiments: progress and challenges. Prog Nucl Magn Reson Spectrosc. 2013 Jan; 68:41-57. PMID: 23398972.
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    21. Khan IH, Ravindran R, Krishnan VV, Awan IN, Rizvi SK, Saqib MA, Shahzad MI, Tahseen S, Ireton G, Goulding CW, Felgner P, DeRiemer K, Khanum A, Luciw PA. Plasma antibody profiles as diagnostic biomarkers for tuberculosis. Clin Vaccine Immunol. 2011 Dec; 18(12):2148-53. PMID: 21976221.
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    22. Wyrobek AJ, Manohar CF, Krishnan VV, Nelson DO, Furtado MR, Bhattacharya MS, Marchetti F, Coleman MA. Low dose radiation response curves, networks and pathways in human lymphoblastoid cells exposed from 1 to 10cGy of acute gamma radiation. Mutat Res. 2011 Jun 17; 722(2):119-30. PMID: 21497671.
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    23. Ravindran R, Khan IH, Krishnan VV, Ziman M, Kendall LV, Frasier JM, Bates R, Griffey SM, Fahey JR, Luciw PA. Validation of multiplex microbead immunoassay for simultaneous serodetection of multiple infectious agents in laboratory mouse. J Immunol Methods. 2010 Dec 15; 363(1):51-9. PMID: 20965193.
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    24. Yamada J, Phillips JL, Patel S, Goldfien G, Calestagne-Morelli A, Huang H, Reza R, Acheson J, Krishnan VV, Newsam S, Gopinathan A, Lau EY, Colvin ME, Uversky VN, Rexach MF. A bimodal distribution of two distinct categories of intrinsically disordered structures with separate functions in FG nucleoporins. Mol Cell Proteomics. 2010 Oct; 9(10):2205-24. PMID: 20368288.
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    25. Khan IH, Krishnan VV, Ziman M, Janatpour K, Wun T, Luciw PA, Tuscano J. A comparison of multiplex suspension array large-panel kits for profiling cytokines and chemokines in rheumatoid arthritis patients. Cytometry B Clin Cytom. 2009 May; 76(3):159-68. PMID: 18823005.
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    26. Krishhan VV, Khan IH, Luciw PA. Multiplexed microbead immunoassays by flow cytometry for molecular profiling: Basic concepts and proteomics applications. Crit Rev Biotechnol. 2009; 29(1):29-43. PMID: 19514901.
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    27. Krishnan VV, Lau EY, Yamada J, Denning DP, Patel SS, Colvin ME, Rexach MF. Intramolecular cohesion of coils mediated by phenylalanine--glycine motifs in the natively unfolded domain of a nucleoporin. PLoS Comput Biol. 2008 Aug 08; 4(8):e1000145. PMID: 18688269.
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    28. Lau EY, Krishnan VV. Temperature dependence of protein-hydration hydrodynamics by molecular dynamics simulations. Biophys Chem. 2007 Oct; 130(1-2):55-64. PMID: 17720293.
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    29. Li QZ, Yeh Y, Liu JJ, Feeney RE, Krishnan VV. A two-dimensional adsorption kinetic model for thermal hysteresis activity in antifreeze proteins. J Chem Phys. 2006 May 28; 124(20):204702. PMID: 16774359.
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    30. Krishnan VV. Radiation damping in microcoil NMR probes. J Magn Reson. 2006 Apr; 179(2):294-8. PMID: 16427795.
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    31. Mielke SP, Krishnan VV. Estimation of protein secondary structure content directly from NMR spectra using an improved empirical correlation with averaged chemical shift. J Struct Funct Genomics. 2005 Dec; 6(4):281-5. PMID: 16283427.
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    32. Mielke SP, Grønbech-Jensen N, Krishnan VV, Fink WH, Benham CJ. Brownian dynamics simulations of sequence-dependent duplex denaturation in dynamically superhelical DNA. J Chem Phys. 2005 Sep 22; 123(12):124911. PMID: 16392531.
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    33. Krishnan VV, Lau EY, Tsvetkova NM, Feeney RE, Fink WH, Yeh Y. Characterization of the restricted rotation of the dimethyl groups in chemically N-terminal 13C-labeled antifreeze glycoproteins: a temperature-dependent study in water to ice through the supercooled state. J Chem Phys. 2005 Jul 22; 123(4):044702. PMID: 16095379.
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    34. Cosman M, Krishnan VV, Balhorn R. Application of NMR methods to identify detection reagents for use in development of robust nanosensors. Methods Mol Biol. 2005; 300:141-63. PMID: 15657483.
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    35. Mielke SP, Fink WH, Krishnan VV, Grønbech-Jensen N, Benham CJ. Transcription-driven twin supercoiling of a DNA loop: a Brownian dynamics study. J Chem Phys. 2004 Oct 22; 121(16):8104-12. PMID: 15485274.
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    36. Mielke SP, Krishnan VV. An evaluation of chemical shift index-based secondary structure determination in proteins: influence of random coil chemical shifts. J Biomol NMR. 2004 Oct; 30(2):143-53. PMID: 15666561.
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    37. Krishnan VV, Fink WH, Feeney RE, Yeh Y. Translational dynamics of antifreeze glycoprotein in supercooled water. Biophys Chem. 2004 Aug 01; 110(3):223-30. PMID: 15228958.
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    38. Mielke SP, Krishnan VV. Protein structural class identification directly from NMR spectra using averaged chemical shifts. Bioinformatics. 2003 Nov 01; 19(16):2054-64. PMID: 14594710.
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    39. Sibley AB, Cosman M, Krishnan VV. An empirical correlation between secondary structure content and averaged chemical shifts in proteins. Biophys J. 2003 Feb; 84(2 Pt 1):1223-7. PMID: 12547802.
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    40. Cosman M, Lightstone FC, Krishnan VV, Zeller L, Prieto MC, Roe DC, Balhorn R. Identification of novel small molecules that bind to two different sites on the surface of tetanus toxin C fragment. Chem Res Toxicol. 2002 Oct; 15(10):1218-28. PMID: 12387617.
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    41. Mesleh MF, Belmar N, Lu CW, Krishnan VV, Maxwell RS, Genain CP, Cosman M. Marmoset fine B cell and T cell epitope specificities mapped onto a homology model of the extracellular domain of human myelin oligodendrocyte glycoprotein. Neurobiol Dis. 2002 Mar; 9(2):160-72. PMID: 11895369.
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    42. Tsvetkova NM, Phillips BL, Krishnan VV, Feeney RE, Fink WH, Crowe JH, Risbud SH, Tablin F, Yeh Y. Dynamics of antifreeze glycoproteins in the presence of ice. Biophys J. 2002 Jan; 82(1 Pt 1):464-73. PMID: 11751333.
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    43. Krishnan VV, Thornton KH, Thelen MP, Cosman M. Solution structure and backbone dynamics of the human DNA ligase IIIalpha BRCT domain. Biochemistry. 2001 Nov 06; 40(44):13158-66. PMID: 11683624.
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    44. Brown K, Hingerty BE, Guenther EA, Krishnan VV, Broyde S, Turteltaub KW, Cosman M. Solution structure of the 2-amino-1- methyl-6-phenylimidazo[4,5-b]pyridine C8-deoxyguanosine adduct in duplex DNA. Proc Natl Acad Sci U S A. 2001 Jul 17; 98(15):8507-12. PMID: 11438709.
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    45. Thornton KH, Krishnan VV, West MG, Popham J, Ramirez M, Thelen MP, Cosman M. Expression, purification, and biophysical characterization of the BRCT domain of human DNA ligase IIIalpha. Protein Expr Purif. 2001 Apr; 21(3):401-11. PMID: 11281714.
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    46. Krishnan VV, Sukumar M, Gierasch LM, Cosman M. Dynamics of cellular retinoic acid binding protein I on multiple time scales with implications for ligand binding. Biochemistry. 2000 Aug 08; 39(31):9119-29. PMID: 10924105.
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    47. Krishnan VV, Cosman M. An empirical relationship between rotational correlation time and solvent accessible surface area. J Biomol NMR. 1998 Jul; 12(1):177-82. PMID: 20700691.
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    48. Hileman MR, Chapman BS, Rabizadeh S, Krishnan VV, Bredesen D, Assa-Munt N, Plesniak LA. A cytoplasmic peptide of the neurotrophin receptor p75NTR: induction of apoptosis and NMR determined helical conformation. FEBS Lett. 1997 Sep 29; 415(2):145-54. PMID: 9350985.
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    49. Krishnan VV, Rance M. Calculation of coherence-transfer behavior under planar versus isotropic mixing Hamiltonians and application to heteronuclear J cross-polarization experiments in solution-state NMR spectroscopy. J Magn Reson. 1997 Jan; 124(1):205-9. PMID: 9169214.
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    50. Gaal T, Ross W, Blatter EE, Tang H, Jia X, Krishnan VV, Assa-Munt N, Ebright RH, Gourse RL. DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture. Genes Dev. 1996 Jan 01; 10(1):16-26. PMID: 8557191.
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