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Draft Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum mesophilum Strain ECR. Microbiol Resour Announc. 2021 Jan 07; 10(1).
Mickol RL, Louyakis AS, Kee HL, Johnson LK, Dawson SC, Hargreaves KR, Chadwick GL, Newman DK, Leadbetter JR, Brown CT. PMID: 33414314; PMCID: PMC8407737.
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Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity. Genome Biol. 2020 07 06; 21(1):164.
Brown CT, Moritz D, O'Brien MP, Reidl F, Reiter T, Sullivan BD. PMID: 32631445; PMCID: PMC7336657.
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PubMed Mentions:
22 Fields:
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Author Correction: Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull. Nat Biotechnol. 2020 Feb; 38(2):245.
Young AE, Mansour TA, McNabb BR, Owen JR, Trott JF, Brown CT, Van Eenennaam AL. PMID: 31992864; PMCID: PMC7007411.
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PubMed Mentions:
1 Fields:
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Correction to: Transcriptome of the caribbean stony coral Porites astreoides from three developmental stages. Gigascience. 2019 11 01; 8(11).
Mansour TA, Rosenthal JJC, Brown CT, Roberson LM. PMID: 31730696; PMCID: PMC6857687.
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PubMed Mentions: Fields:
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Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull. Nat Biotechnol. 2020 02; 38(2):225-232.
Young AE, Mansour TA, McNabb BR, Owen JR, Trott JF, Brown CT, Van Eenennaam AL. PMID: 31591551; PMCID: PMC7007412.
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PubMed Mentions:
27 Fields:
Translation:
AnimalsCells
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Large-scale sequence comparisons with sourmash. F1000Res. 2019; 8:1006.
Pierce NT, Irber L, Reiter T, Brooks P, Brown CT. PMID: 31508216; PMCID: PMC6720031.
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PubMed Mentions:
59 Fields:
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Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes. Gigascience. 2019 04 01; 8(4).
Johnson LK, Alexander H, Brown CT. PMID: 30544207; PMCID: PMC6481552.
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PubMed Mentions:
37 Fields:
Translation:
AnimalsCells
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Keeping it light: (re)analyzing community-wide datasets without major infrastructure. Gigascience. 2019 02 01; 8(2).
Alexander H, Johnson LK, Brown CT. PMID: 30544142; PMCID: PMC6350038.
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PubMed Mentions:
2 Fields:
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The principles of tomorrow's university. F1000Res. 2018; 7:1926.
Katz DS, Allen G, Barba LA, Berg DR, Bik H, Boettiger C, Borgman CL, Brown CT, Buck S, Burd R, de Waard A, Eve MP, Granger BE, Greenberg J, Howe A, Howe B, Khanna M, Killeen TL, Mayernik M, McKiernan E, Mentzel C, Merchant N, Niemeyer KE, Noren L, Nusser SM, Reed DA, Seidel E, Smith M, Spies JR, Turk M, Van Horn JD, Walsh J. PMID: 30687499; PMCID: PMC6338243.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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Whole genome variant association across 100 dogs identifies a frame shift mutation in DISHEVELLED 2 which contributes to Robinow-like syndrome in Bulldogs and related screw tail dog breeds. PLoS Genet. 2018 12; 14(12):e1007850.
Mansour TA, Lucot K, Konopelski SE, Dickinson PJ, Sturges BK, Vernau KL, Choi S, Stern JA, Thomasy SM, Döring S, Verstraete FJM, Johnson EG, York D, Rebhun RB, Ho HH, Brown CT, Bannasch DL. PMID: 30521570; PMCID: PMC6303079.
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PubMed Mentions:
34 Fields:
Translation:
HumansAnimalsCells
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A Missense Mutation in the Vacuolar Protein Sorting 11 (VPS11) Gene Is Associated with Neuroaxonal Dystrophy in Rottweiler Dogs. G3 (Bethesda). 2018 07 31; 8(8):2773-2780.
Lucot KL, Dickinson PJ, Finno CJ, Mansour TA, Letko A, Minor KM, Mickelson JR, Drögemüller C, Brown CT, Bannasch DL. PMID: 29945969; PMCID: PMC6071611.
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PubMed Mentions:
11 Fields:
Translation:
AnimalsCells
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ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucleic Acids Res. 2018 01 04; 46(D1):D718-D725.
Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha SB, Fagotto M, Guéroult-Bellone M, Haeussler M, Jacox E, Lowe EK, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown CT, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff JN, Lemaire P. PMID: 29149270; PMCID: PMC5753386.
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PubMed Mentions:
43 Fields:
Translation:
AnimalsCells
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Central nervous system transcriptome of Biomphalaria alexandrina, an intermediate host for schistosomiasis. BMC Res Notes. 2017 Dec 11; 10(1):729.
Mansour TA, Habib MR, Rodríguez LCV, Vázquez AH, Alers JM, Ghezzi A, Croll RP, Brown CT, Miller MW. PMID: 29228974; PMCID: PMC5725652.
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PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
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FGF4 retrogene on CFA12 is responsible for chondrodystrophy and intervertebral disc disease in dogs. Proc Natl Acad Sci U S A. 2017 10 24; 114(43):11476-11481.
Brown EA, Dickinson PJ, Mansour T, Sturges BK, Aguilar M, Young AE, Korff C, Lind J, Ettinger CL, Varon S, Pollard R, Brown CT, Raudsepp T, Bannasch DL. PMID: 29073074; PMCID: PMC5664524.
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PubMed Mentions:
65 Fields:
Translation:
Animals
-
Draft genome of tule elk Cervus elaphus nannodes. F1000Res. 2017; 6:1691.
Mizzi JE, Lounsberry ZT, Brown CT, Sacks BN. PMID: 29333237; PMCID: PMC5747339.
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PubMed Mentions:
5 Fields:
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Identification of long non-coding RNA in the horse transcriptome. BMC Genomics. 2017 07 04; 18(1):511.
Scott EY, Mansour T, Bellone RR, Brown CT, Mienaltowski MJ, Penedo MC, Ross PJ, Valberg SJ, Murray JD, Finno CJ. PMID: 28676104; PMCID: PMC5496257.
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PubMed Mentions:
14 Fields:
Translation:
AnimalsCells
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Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence. Genome Res. 2017 03; 27(3):471-478.
Maheshwari S, Ishii T, Brown CT, Houben A, Comai L. PMID: 28223399; PMCID: PMC5340974.
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PubMed Mentions:
30 Fields:
Translation:
AnimalsCells
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Tissue resolved, gene structure refined equine transcriptome. BMC Genomics. 2017 01 20; 18(1):103.
Mansour TA, Scott EY, Finno CJ, Bellone RR, Mienaltowski MJ, Penedo MC, Ross PJ, Valberg SJ, Murray JD, Brown CT. PMID: 28107812; PMCID: PMC5251313.
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PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
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A New Chicken Genome Assembly Provides Insight into Avian Genome Structure. G3 (Bethesda). 2017 01 05; 7(1):109-117.
Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, Abrahamsen M, Pyrkosz AB, Morisson M, Fillon V, Vignal A, Chow W, Howe K, Fulton JE, Miller MM, Lovell P, Mello CV, Wirthlin M, Mason AS, Kuo R, Burt DW, Dodgson JB, Cheng HH. PMID: 27852011; PMCID: PMC5217101.
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PubMed Mentions:
123 Fields:
Translation:
AnimalsCells
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Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages. Gigascience. 2016 08 02; 5(1):33.
Mansour TA, Rosenthal JJ, Brown CT, Roberson LM. PMID: 27485233; PMCID: PMC4969664.
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PubMed Mentions:
7 Fields:
Translation:
Animals
-
How open science helps researchers succeed. Elife. 2016 07 07; 5.
McKiernan EC, Bourne PE, Brown CT, Buck S, Kenall A, Lin J, McDougall D, Nosek BA, Ram K, Soderberg CK, Spies JR, Thaney K, Updegrove A, Woo KH, Yarkoni T. PMID: 27387362; PMCID: PMC4973366.
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PubMed Mentions:
119 Fields:
Translation:
Humans
-
Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing. PLoS One. 2016; 11(1):e0147229.
Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA. PMID: 26789840; PMCID: PMC4720449.
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PubMed Mentions:
18 Fields:
Translation:
HumansAnimals
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Hsp90 and hepatobiliary transformation during sea lamprey metamorphosis. BMC Dev Biol. 2015 Dec 01; 15:47.
Chung-Davidson YW, Yeh CY, Bussy U, Li K, Davidson PJ, Nanlohy KG, Brown CT, Whyard S, Li W. PMID: 26627605; PMCID: PMC4667476.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimalsCells
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Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes. Appl Environ Microbiol. 2016 01 01; 82(1):157-66.
Guo J, Cole JR, Zhang Q, Brown CT, Tiedje JM. PMID: 26475107; PMCID: PMC4702641.
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PubMed Mentions:
28 Fields:
Translation:
CellsPHPublic Health
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Strain recovery from metagenomes. Nat Biotechnol. 2015 Oct; 33(10):1041-3.
Brown CT. PMID: 26448087.
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PubMed Mentions:
7 Fields:
Translation:
Cells
-
Differentially-Expressed Pseudogenes in HIV-1 Infection. Viruses. 2015 Sep 29; 7(10):5191-205.
Gupta A, Brown CT, Zheng YH, Adami C. PMID: 26426037; PMCID: PMC4632377.
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PubMed Mentions:
5 Fields:
Translation:
HumansCells
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ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Nucleic Acids Res. 2016 Jan 04; 44(D1):D808-18.
Brozovic M, Martin C, Dantec C, Dauga D, Mendez M, Simion P, Percher M, Laporte B, Scornavacca C, Di Gregorio A, Fujiwara S, Gineste M, Lowe EK, Piette J, Racioppi C, Ristoratore F, Sasakura Y, Takatori N, Brown TC, Delsuc F, Douzery E, Gissi C, McDougall A, Nishida H, Sawada H, Swalla BJ, Yasuo H, Lemaire P. PMID: 26420834; PMCID: PMC4702943.
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PubMed Mentions:
36 Fields:
Translation:
Animals
-
Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res. 2015; 145(2):78-179.
Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H. PMID: 26282327; PMCID: PMC5120589.
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PubMed Mentions:
43 Fields:
Translation:
AnimalsCells
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Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in sea lamprey and Japanese lamprey. BMC Genomics. 2015 Jun 06; 16:436.
Ren J, Chung-Davidson YW, Yeh CY, Scott C, Brown T, Li W. PMID: 26047617; PMCID: PMC4458048.
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PubMed Mentions:
14 Fields:
Translation:
Animals
-
Advancing the microbiome research community. Cell. 2014 Oct 09; 159(2):227-30.
Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J, Scientists for Advancement of Microbiome Research, White O. PMID: 25303518; PMCID: PMC4221798.
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PubMed Mentions:
34 Fields:
Translation:
HumansAnimals
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Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians. Elife. 2014 Sep 10; 3:e03728.
Stolfi A, Lowe EK, Racioppi C, Ristoratore F, Brown CT, Swalla BJ, Christiaen L. PMID: 25209999; PMCID: PMC4356046.
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PubMed Mentions:
40 Fields:
Translation:
AnimalsCells
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These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure. PLoS One. 2014; 9(7):e101271.
Zhang Q, Pell J, Canino-Koning R, Howe AC, Brown CT. PMID: 25062443; PMCID: PMC4111482.
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PubMed Mentions:
33 Fields:
Translation:
Humans
-
Tackling soil diversity with the assembly of large, complex metagenomes. Proc Natl Acad Sci U S A. 2014 Apr 01; 111(13):4904-9.
Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. PMID: 24632729; PMCID: PMC3977251.
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PubMed Mentions:
131 Fields:
Translation:
HumansAnimalsPHPublic Health
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Best practices for scientific computing. PLoS Biol. 2014 Jan; 12(1):e1001745.
Wilson G, Aruliah DA, Brown CT, Chue Hong NP, Davis M, Guy RT, Haddock SH, Huff KD, Mitchell IM, Plumbley MD, Waugh B, White EP, Wilson P. PMID: 24415924; PMCID: PMC3886731.
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PubMed Mentions:
121 Fields:
Translation:
Humans
-
Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. 2014 Jan; 42(Database issue):D633-42.
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. PMID: 24288368; PMCID: PMC3965039.
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PubMed Mentions:
1593 Fields:
Translation:
AnimalsCells
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Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax worms. ISME J. 2014 Apr; 8(4):908-24.
Goffredi SK, Yi H, Zhang Q, Klann JE, Struve IA, Vrijenhoek RC, Brown CT. PMID: 24225886; PMCID: PMC3960542.
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PubMed Mentions:
19 Fields:
Translation:
AnimalsCells
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FunGene: the functional gene pipeline and repository. Front Microbiol. 2013; 4:291.
Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR. PMID: 24101916; PMCID: PMC3787254.
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PubMed Mentions:
213
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The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus. Genome Biol. 2013 Aug 28; 14(8):R89.
Schwarz EM, Korhonen PK, Campbell BE, Young ND, Jex AR, Jabbar A, Hall RS, Mondal A, Howe AC, Pell J, Hofmann A, Boag PR, Zhu XQ, Gregory T, Loukas A, Williams BA, Antoshechkin I, Brown C, Sternberg PW, Gasser RB. PMID: 23985341; PMCID: PMC4053716.
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PubMed Mentions:
116 Fields:
Translation:
AnimalsCells
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The sea lamprey has a primordial accessory olfactory system. BMC Evol Biol. 2013 Aug 17; 13:172.
Chang S, Chung-Davidson YW, Libants SV, Nanlohy KG, Kiupel M, Brown CT, Li W. PMID: 23957559; PMCID: PMC3765145.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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A thermogenic secondary sexual character in male sea lamprey. J Exp Biol. 2013 Jul 15; 216(Pt 14):2702-12.
Chung-Davidson YW, Priess MC, Yeh CY, Brant CO, Johnson NS, Li K, Nanlohy KG, Bryan MB, Brown CT, Choi J, Li W. PMID: 23804672; PMCID: PMC3694098.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by a Marek's disease virus oncoprotein, Meq. J Virol. 2013 Aug; 87(16):9016-29.
Subramaniam S, Johnston J, Preeyanon L, Brown CT, Kung HJ, Cheng HH. PMID: 23740999; PMCID: PMC3754031.
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PubMed Mentions:
17 Fields:
Translation:
AnimalsCells
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Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat Genet. 2013 Apr; 45(4):415-21, 421e1-2.
Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W. PMID: 23435085; PMCID: PMC3709584.
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PubMed Mentions:
266 Fields:
Translation:
AnimalsCells
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Draft genome sequences of two Campylobacter jejuni clinical isolates, NW and D2600. J Bacteriol. 2012 Oct; 194(20):5707-8.
Jerome JP, Klahn BD, Bell JA, Barrick JE, Brown CT, Mansfield LS. PMID: 23012285; PMCID: PMC3458685.
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PubMed Mentions: Fields:
Translation:
HumansAnimalsCells
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Cephalopod genomics: A plan of strategies and organization. Stand Genomic Sci. 2012 Oct 10; 7(1):175-88.
Albertin CB, Bonnaud L, Brown CT, Crookes-Goodson WJ, da Fonseca RR, Di Cristo C, Dilkes BP, Edsinger-Gonzales E, Freeman RM, Hanlon RT, Koenig KM, Lindgren AR, Martindale MQ, Minx P, Moroz LL, Nödl MT, Nyholm SV, Ogura A, Pungor JR, Rosenthal JJ, Schwarz EM, Shigeno S, Strugnell JM, Wollesen T, Zhang G, Ragsdale CW. PMID: 23451296; PMCID: PMC3570802.
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PubMed Mentions:
21
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. Proc Natl Acad Sci U S A. 2012 Aug 14; 109(33):13272-7.
Pell J, Hintze A, Canino-Koning R, Howe A, Tiedje JM, Brown CT. PMID: 22847406; PMCID: PMC3421212.
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PubMed Mentions:
87 Fields:
Translation:
CellsPHPublic Health
-
Changing computational research. The challenges ahead. Source Code Biol Med. 2012 May 28; 7(1):2.
Neylon C, Aerts J, Brown CT, Coles SJ, Hatton L, Lemire D, Millman KJ, Murray-Rust P, Perez F, Saunders N, Shah N, Smith A, Varoquaux G, Willighagen E. PMID: 22640749; PMCID: PMC3441321.
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PubMed Mentions:
2
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Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host. PLoS One. 2011 Jan 24; 6(1):e16399.
Jerome JP, Bell JA, Plovanich-Jones AE, Barrick JE, Brown CT, Mansfield LS. PMID: 21283682; PMCID: PMC3025981.
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PubMed Mentions:
65 Fields:
Translation:
AnimalsCells
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Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics. Proc Natl Acad Sci U S A. 2008 May 13; 105(19):7052-7.
Pernthaler A, Dekas AE, Brown CT, Goffredi SK, Embaye T, Orphan VJ. PMID: 18467493; PMCID: PMC2383945.
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PubMed Mentions:
85 Fields:
Translation:
Cells
-
Computational approaches to finding and analyzing cis-regulatory elements. Methods Cell Biol. 2008; 87:337-65.
Brown CT. PMID: 18485306.
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PubMed Mentions:
4 Fields:
Translation:
AnimalsCells
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The genome of the sea urchin Strongylocentrotus purpuratus. Science. 2006 Nov 10; 314(5801):941-52.
Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R. PMID: 17095691; PMCID: PMC3159423.
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PubMed Mentions:
420 Fields:
Translation:
AnimalsCells
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High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution. Dev Biol. 2006 Dec 01; 300(1):27-34.
Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH. PMID: 17101125; PMCID: PMC1790870.
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PubMed Mentions:
23 Fields:
Translation:
AnimalsCells
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Sea urchin Forkhead gene family: phylogeny and embryonic expression. Dev Biol. 2006 Dec 01; 300(1):49-62.
Tu Q, Brown CT, Davidson EH, Oliveri P. PMID: 17081512.
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PubMed Mentions:
92 Fields:
Translation:
HumansAnimals
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Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus. Dev Biol. 2006 Dec 01; 300(1):90-107.
Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH. PMID: 17054934.
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PubMed Mentions:
67 Fields:
Translation:
Animals
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Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development. Dev Biol. 2006 Dec 01; 300(1):74-89.
Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH. PMID: 17055477.
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PubMed Mentions:
64 Fields:
Translation:
Animals
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Anaerobic regulation by an atypical Arc system in Shewanella oneidensis. Mol Microbiol. 2005 Jun; 56(5):1347-57.
Gralnick JA, Brown CT, Newman DK. PMID: 15882425.
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PubMed Mentions:
48 Fields:
Translation:
Cells
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Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison. BMC Bioinformatics. 2005 Mar 24; 6:70.
Brown CT, Xie Y, Davidson EH, Cameron RA. PMID: 15790396; PMCID: PMC1087472.
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PubMed Mentions:
19 Fields:
Translation:
HumansAnimalsCells
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Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli. Proc Natl Acad Sci U S A. 2004 Feb 24; 101(8):2404-9.
Brown CT, Callan CG. PMID: 14983022; PMCID: PMC356963.
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PubMed Mentions:
24 Fields:
Translation:
Cells
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Genomic resources for the study of sea urchin development. Methods Cell Biol. 2004; 74:733-57.
Cameron RA, Rast JP, Brown CT. PMID: 15575629.
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PubMed Mentions:
6 Fields:
Translation:
Animals
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New computational approaches for analysis of cis-regulatory networks. Dev Biol. 2002 Jun 01; 246(1):86-102.
Brown CT, Rust AG, Clarke PJ, Pan Z, Schilstra MJ, De Buysscher T, Griffin G, Wold BJ, Cameron RA, Davidson EH, Bolouri H. PMID: 12027436.
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PubMed Mentions:
28 Fields:
Translation:
Cells
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Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin. Dev Biol. 2002 Jun 01; 246(1):148-61.
Yuh CH, Brown CT, Livi CB, Rowen L, Clarke PJ, Davidson EH. PMID: 12027440.
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PubMed Mentions:
29 Fields:
Translation:
AnimalsCells
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A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Dev Biol. 2002 Jun 01; 246(1):162-90.
Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H. PMID: 12027441.
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PubMed Mentions:
100 Fields:
Translation:
Animals
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A genomic regulatory network for development. Science. 2002 Mar 01; 295(5560):1669-78.
Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Zj, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H. PMID: 11872831.
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PubMed Mentions:
450 Fields:
Translation:
AnimalsCells
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Visualizing evolutionary activity of genotypes. Artif Life. 1999; 5(1):17-35.
Bedau MA, Brown CT. PMID: 10421677.
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PubMed Mentions:
1 Fields:
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Evaluation of intravenous administration of concentrated immunoglobulin G to colostrum-deprived foals. Am J Vet Res. 1991 May; 52(5):709-12.
Liu IK, Brown C, Myers RC, Hao YL. PMID: 1854093.
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PubMed Mentions:
1 Fields:
Translation:
Animals