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Sean Collins

Title(s)Assistant Professor, Microbiology and Molecular Genetics
SchoolUniversity of California, Davis
AddressONE SHIELDS AVE.
CA 95616
Emailsrcollins@ucdavis.edu
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    Collapse Research 
    Collapse Research Activities and Funding
    Rewiring Control of Leukocyte Motility for Therapeutic Application
    NIH/NICHD DP2HD094656Sep 1, 2017 - Jun 30, 2022
    Role: Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Decoding GEFs of animated cells. Nat Chem Biol. 2020 Aug; 16(8):812-813. Natwick DE, Collins SR. PMID: 32694631.
      View in: PubMed   Mentions:    Fields:    
    2. Efficient Front-Rear Coupling in Neutrophil Chemotaxis by Dynamic Myosin II Localization. Dev Cell. 2019 04 22; 49(2):189-205.e6. Tsai TY, Collins SR, Chan CK, Hadjitheodorou A, Lam PY, Lou SS, Yang HW, Jorgensen J, Ellett F, Irimia D, Davidson MW, Fischer RS, Huttenlocher A, Meyer T, Ferrell JE, Theriot JA. PMID: 31014479.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    3. Identification of phagocytosis regulators using magnetic genome-wide CRISPR screens. Nat Genet. 2018 12; 50(12):1716-1727. Haney MS, Bohlen CJ, Morgens DW, Ousey JA, Barkal AA, Tsui CK, Ego BK, Levin R, Kamber RA, Collins H, Tucker A, Li A, Vorselen D, Labitigan L, Crane E, Boyle E, Jiang L, Chan J, Rincón E, Greenleaf WJ, Li B, Snyder MP, Weissman IL, Theriot JA, Collins SR, Barres BA, Bassik MC. PMID: 30397336.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    4. A map of gene expression in neutrophil-like cell lines. BMC Genomics. 2018 Aug 01; 19(1):573. Rincón E, Rocha-Gregg BL, Collins SR. PMID: 30068296.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    5. "Rho"ing a Cellular Boat with Rearward Membrane Flow. Dev Cell. 2018 07 02; 46(1):1-3. Bell GRR, Collins SR. PMID: 29974859.
      View in: PubMed   Mentions:    Fields:    
    6. Parallel High-Resolution Imaging of Leukocyte Chemotaxis Under Agarose with Rho-Family GTPase Biosensors. Methods Mol Biol. 2018; 1821:71-85. Bell GRR, Natwick DE, Collins SR. PMID: 30062406.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    7. Waves of actin and microtubule polymerization drive microtubule-based transport and neurite growth before single axon formation. Elife. 2016 Feb 02; 5:e12387. Winans AM, Collins SR, Meyer T. PMID: 26836307.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    8. Locally excitable Cdc42 signals steer cells during chemotaxis. Nat Cell Biol. 2016 02; 18(2):191-201. Yang HW, Collins SR, Meyer T. PMID: 26689677.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    9. Using light to shape chemical gradients for parallel and automated analysis of chemotaxis. Mol Syst Biol. 2015 Apr 23; 11(4):804. Collins SR, Yang HW, Bonger KM, Guignet EG, Wandless TJ, Meyer T. PMID: 25908733.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    10. Systematic Discovery of Human Gene Function and Principles of Modular Organization through Phylogenetic Profiling. Cell Rep. 2015 Feb 17; 10(6):993-1006. Dey G, Jaimovich A, Collins SR, Seki A, Meyer T. PMID: 25683721.
      View in: PubMed   Mentions: 13     Fields:    
    11. Dynamic recruitment of the curvature-sensitive protein ArhGAP44 to nanoscale membrane deformations limits exploratory filopodia initiation in neurons. Elife. 2014 Dec 15; 3:e03116. Galic M, Tsai FC, Collins SR, Matis M, Bandara S, Meyer T. PMID: 25498153.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    12. Set5 and Set1 cooperate to repress gene expression at telomeres and retrotransposons. Epigenetics. 2014 Apr; 9(4):513-22. Martín GM, King DA, Green EM, Garcia-Nieto PE, Alexander R, Collins SR, Krogan NJ, Gozani OP, Morrison AJ. PMID: 24442241.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    13. Hierarchical modularity and the evolution of genetic interactomes across species. Mol Cell. 2012 Jun 08; 46(5):691-704. Ryan CJ, Roguev A, Patrick K, Xu J, Jahari H, Tong Z, Beltrao P, Shales M, Qu H, Collins SR, Kliegman JI, Jiang L, Kuo D, Tosti E, Kim HS, Edelmann W, Keogh MC, Greene D, Tang C, Cunningham P, Shokat KM, Cagney G, Svensson JP, Guthrie C, Espenshade PJ, Ideker T, Krogan NJ. PMID: 22681890.
      View in: PubMed   Mentions: 82     Fields:    Translation:Animals
    14. Functional repurposing revealed by comparing S. pombe and S. cerevisiae genetic interactions. Cell. 2012 Jun 08; 149(6):1339-52. Frost A, Elgort MG, Brandman O, Ives C, Collins SR, Miller-Vedam L, Weibezahn J, Hein MY, Poser I, Mann M, Hyman AA, Weissman JS. PMID: 22682253.
      View in: PubMed   Mentions: 57     Fields:    Translation:AnimalsCells
    15. A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria. J Cell Biol. 2011 Oct 17; 195(2):323-40. Hoppins S, Collins SR, Cassidy-Stone A, Hummel E, Devay RM, Lackner LL, Westermann B, Schuldiner M, Weissman JS, Nunnari J. PMID: 21987634.
      View in: PubMed   Mentions: 128     Fields:    Translation:AnimalsCells
    16. Site-specific acetylation mark on an essential chromatin-remodeling complex promotes resistance to replication stress. Proc Natl Acad Sci U S A. 2011 Jun 28; 108(26):10620-5. Charles GM, Chen C, Shih SC, Collins SR, Beltrao P, Zhang X, Sharma T, Tan S, Burlingame AL, Krogan NJ, Madhani HD, Narlikar GJ. PMID: 21673141.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    17. Evolutionary origins of STIM1 and STIM2 within ancient Ca2+ signaling systems. Trends Cell Biol. 2011 Apr; 21(4):202-11. Collins SR, Meyer T. PMID: 21288721.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    18. Cell biology: A sensor for calcium uptake. Nature. 2010 Sep 16; 467(7313):283. Collins S, Meyer T. PMID: 20844529.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    19. Quantitative genetic interaction mapping using the E-MAP approach. Methods Enzymol. 2010; 470:205-31. Collins SR, Roguev A, Krogan NJ. PMID: 20946812.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    20. Orm family proteins mediate sphingolipid homeostasis. Nature. 2010 Feb 25; 463(7284):1048-53. Breslow DK, Collins SR, Bodenmiller B, Aebersold R, Simons K, Shevchenko A, Ejsing CS, Weissman JS. PMID: 20182505.
      View in: PubMed   Mentions: 201     Fields:    Translation:HumansAnimalsCells
    21. From information to knowledge: new technologies for defining gene function. Nat Methods. 2009 Oct; 6(10):721-23. Collins SR, Weissman JS, Krogan NJ. PMID: 19953683.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    22. An ER-mitochondria tethering complex revealed by a synthetic biology screen. Science. 2009 Jul 24; 325(5939):477-81. Kornmann B, Currie E, Collins SR, Schuldiner M, Nunnari J, Weissman JS, Walter P. PMID: 19556461.
      View in: PubMed   Mentions: 368     Fields:    Translation:AnimalsCells
    23. Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Science. 2009 Mar 27; 323(5922):1693-7. Jonikas MC, Collins SR, Denic V, Oh E, Quan EM, Schmid V, Weibezahn J, Schwappach B, Walter P, Weissman JS, Schuldiner M. PMID: 19325107.
      View in: PubMed   Mentions: 229     Fields:    Translation:AnimalsCells
    24. Functional organization of the S. cerevisiae phosphorylation network. Cell. 2009 Mar 06; 136(5):952-63. Fiedler D, Braberg H, Mehta M, Chechik G, Cagney G, Mukherjee P, Silva AC, Shales M, Collins SR, van Wageningen S, Kemmeren P, Holstege FC, Weissman JS, Keogh MC, Koller D, Shokat KM, Krogan NJ. PMID: 19269370.
      View in: PubMed   Mentions: 140     Fields:    Translation:AnimalsCells
    25. Calcium flickers lighting the way in chemotaxis? Dev Cell. 2009 Feb; 16(2):160-1. Collins SR, Meyer T. PMID: 19217416.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    26. A complex-based reconstruction of the Saccharomyces cerevisiae interactome. Mol Cell Proteomics. 2009 Jun; 8(6):1361-81. Wang H, Kakaradov B, Collins SR, Karotki L, Fiedler D, Shales M, Shokat KM, Walther TC, Krogan NJ, Koller D. PMID: 19176519.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    27. A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Mol Cell. 2008 Dec 05; 32(5):735-46. Wilmes GM, Bergkessel M, Bandyopadhyay S, Shales M, Braberg H, Cagney G, Collins SR, Whitworth GB, Kress TL, Weissman JS, Ideker T, Guthrie C, Krogan NJ. PMID: 19061648.
      View in: PubMed   Mentions: 137     Fields:    Translation:AnimalsCells
    28. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Science. 2008 Oct 17; 322(5900):405-10. Roguev A, Bandyopadhyay S, Zofall M, Zhang K, Fischer T, Collins SR, Qu H, Shales M, Park HO, Hayles J, Hoe KL, Kim DU, Ideker T, Grewal SI, Weissman JS, Krogan NJ. PMID: 18818364.
      View in: PubMed   Mentions: 179     Fields:    Translation:AnimalsCells
    29. High-throughput, quantitative analyses of genetic interactions in E. coli. Nat Methods. 2008 Sep; 5(9):781-7. Typas A, Nichols RJ, Siegele DA, Shales M, Collins SR, Lim B, Braberg H, Yamamoto N, Takeuchi R, Wanner BL, Mori H, Weissman JS, Krogan NJ, Gross CA. PMID: 19160513.
      View in: PubMed   Mentions: 101     Fields:    Translation:Cells
    30. A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods. 2008 Aug; 5(8):711-8. Breslow DK, Cameron DM, Collins SR, Schuldiner M, Stewart-Ornstein J, Newman HW, Braun S, Madhani HD, Krogan NJ, Weissman JS. PMID: 18622397.
      View in: PubMed   Mentions: 208     Fields:    Translation:Animals
    31. Small-molecule aggregates inhibit amyloid polymerization. Nat Chem Biol. 2008 Mar; 4(3):197-9. Feng BY, Toyama BH, Wille H, Colby DW, Collins SR, May BC, Prusiner SB, Weissman J, Shoichet BK. PMID: 18223646.
      View in: PubMed   Mentions: 79     Fields:    Translation:AnimalsCells
    32. Mec1/Tel1 phosphorylation of the INO80 chromatin remodeling complex influences DNA damage checkpoint responses. Cell. 2007 Aug 10; 130(3):499-511. Morrison AJ, Kim JA, Person MD, Highland J, Xiao J, Wehr TS, Hensley S, Bao Y, Shen J, Collins SR, Weissman JS, Delrow J, Krogan NJ, Haber JE, Shen X. PMID: 17693258.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    33. Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss. Mol Syst Biol. 2007; 3:86. Ihmels J, Collins SR, Schuldiner M, Krogan NJ, Weissman JS. PMID: 17389874.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    34. CCR4/NOT complex associates with the proteasome and regulates histone methylation. Proc Natl Acad Sci U S A. 2007 Apr 03; 104(14):5836-41. Laribee RN, Shibata Y, Mersman DP, Collins SR, Kemmeren P, Roguev A, Weissman JS, Briggs SD, Krogan NJ, Strahl BD. PMID: 17389396.
      View in: PubMed   Mentions: 39     Fields:    Translation:AnimalsCells
    35. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 2007 Apr 12; 446(7137):806-10. Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, Boone C, Berger SL, Hieter P, Zhang Z, Brown GW, Ingles CJ, Emili A, Allis CD, Toczyski DP, Weissman JS, Greenblatt JF, Krogan NJ. PMID: 17314980.
      View in: PubMed   Mentions: 468     Fields:    Translation:AnimalsCells
    36. Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol Cell Proteomics. 2007 Mar; 6(3):439-50. Collins SR, Kemmeren P, Zhao XC, Greenblatt JF, Spencer F, Holstege FC, Weissman JS, Krogan NJ. PMID: 17200106.
      View in: PubMed   Mentions: 305     Fields:    Translation:Animals
    37. Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions. Methods. 2006 Dec; 40(4):344-52. Schuldiner M, Collins SR, Weissman JS, Krogan NJ. PMID: 17101447.
      View in: PubMed   Mentions: 50     Fields:    Translation:AnimalsCells
    38. The physical basis of how prion conformations determine strain phenotypes. Nature. 2006 Aug 03; 442(7102):585-9. Tanaka M, Collins SR, Toyama BH, Weissman JS. PMID: 16810177.
      View in: PubMed   Mentions: 254     Fields:    Translation:AnimalsCells
    39. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30; 440(7084):637-43. Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. PMID: 16554755.
      View in: PubMed   Mentions: 1067     Fields:    Translation:AnimalsCells
    40. A strategy for extracting and analyzing large-scale quantitative epistatic interaction data. Genome Biol. 2006; 7(7):R63. Collins SR, Schuldiner M, Krogan NJ, Weissman JS. PMID: 16859555.
      View in: PubMed   Mentions: 156     Fields:    
    41. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell. 2005 Nov 18; 123(4):593-605. Keogh MC, Kurdistani SK, Morris SA, Ahn SH, Podolny V, Collins SR, Schuldiner M, Chin K, Punna T, Thompson NJ, Boone C, Emili A, Weissman JS, Hughes TR, Strahl BD, Grunstein M, Greenblatt JF, Buratowski S, Krogan NJ. PMID: 16286008.
      View in: PubMed   Mentions: 382     Fields:    Translation:AnimalsCells
    42. Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell. 2005 Nov 04; 123(3):507-19. Schuldiner M, Collins SR, Thompson NJ, Denic V, Bhamidipati A, Punna T, Ihmels J, Andrews B, Boone C, Greenblatt JF, Weissman JS, Krogan NJ. PMID: 16269340.
      View in: PubMed   Mentions: 399     Fields:    Translation:AnimalsCells
    43. Mechanism of prion propagation: amyloid growth occurs by monomer addition. PLoS Biol. 2004 Oct; 2(10):e321. Collins SR, Douglass A, Vale RD, Weissman JS. PMID: 15383837.
      View in: PubMed   Mentions: 167     Fields:    
    44. Generation of prion transmission barriers by mutational control of amyloid conformations. Nature. 2003 Aug 21; 424(6951):948-51. Chien P, DePace AH, Collins SR, Weissman JS. PMID: 12931190.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
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