Gerald Quon

Title(s)Assistant Professor, Molecular and Cellular Biology
SchoolCollege of Biological Sciences
Address451 Health Sciences Drive, GBSF 4331
CA 95616
Phone530-752-8263
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Microbiome-based classification models for fresh produce safety and quality evaluation. Microbiol Spectr. 2024 Mar 06; e0344823. Liao C, Wang L, Quon G. PMID: 38445872.
      View in: PubMed   Mentions:    Fields:    
    2. Deciphering the History of ERK Activity from Fixed-Cell Immunofluorescence Measurements. bioRxiv. 2024 Feb 17. Ram A, Pargett M, Choi Y, Murphy D, Cabel M, Kosaisawe N, Quon G, Albeck J. PMID: 38405841; PMCID: PMC10889026.
      View in: PubMed   Mentions:
    3. Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection. Nat Commun. 2023 08 25; 14(1):5192. Johansen N, Hu H, Quon G. PMID: 37626024; PMCID: PMC10457395.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    4. Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. Cell Syst. 2023 04 19; 14(4):252-257. Adler FR, Anderson ARA, Bhushan A, Bogdan P, Bravo-Cordero JJ, Brock A, Chen Y, Cukierman E, DelGiorno KE, Denis GV, Ferrall-Fairbanks MC, Gartner ZJ, Germain RN, Gordon DM, Hunter G, Jolly MK, Karacosta LG, Mythreye K, Katira P, Kulkarni RP, Kutys ML, Lander AD, Laughney AM, Levine H, Lou E, Lowenstein PR, Masters KS, Pe'er D, Peyton SR, Platt MO, Purvis JE, Quon G, Richer JK, Riddle NC, Rodriguez A, Snyder JC, Lee Szeto G, Tomlin CJ, Yanai I, Zervantonakis IK, Dueck H. PMID: 37080161; PMCID: PMC10760508.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    5. siVAE: interpretable deep generative models for single-cell transcriptomes. Genome Biol. 2023 02 20; 24(1):29. Choi Y, Li R, Quon G. PMID: 36803416; PMCID: PMC9940350.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    6. Single-Cell RNA-Seq Analysis Reveals Lung Epithelial Cell Type-Specific Responses to HDM and Regulation by Tet1. Genes (Basel). 2022 05 14; 13(5). Zhu T, Brown AP, Cai LP, Quon G, Ji H. PMID: 35627266; PMCID: PMC9140484.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    7. The Axes of Life: A Roadmap for Understanding Dynamic Multiscale Systems. Integr Comp Biol. 2022 02 05; 61(6):2011-2019. Chandrasekaran S, Danos N, George UZ, Han JP, Quon G, Müller R, Tsang Y, Wolgemuth C. PMID: 34048574.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    8. Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research. Nat Commun. 2021 03 23; 12(1):1821. Kern C, Wang Y, Xu X, Pan Z, Halstead M, Chanthavixay G, Saelao P, Waters S, Xiang R, Chamberlain A, Korf I, Delany ME, Cheng HH, Medrano JF, Van Eenennaam AL, Tuggle CK, Ernst C, Flicek P, Quon G, Ross P, Zhou H. PMID: 33758196; PMCID: PMC7988148.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    9. Systems-Level Properties of EGFR-RAS-ERK Signaling Amplify Local Signals to Generate Dynamic Gene Expression Heterogeneity. Cell Syst. 2020 08 26; 11(2):161-175.e5. Davies AE, Pargett M, Siebert S, Gillies TE, Choi Y, Tobin SJ, Ram AR, Murthy V, Juliano C, Quon G, Bissell MJ, Albeck JG. PMID: 32726596; PMCID: PMC7856305.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    10. Correction to: scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. Genome Biol. 2019 11 21; 20(1):247. Li R, Quon G. PMID: 31752962; PMCID: PMC6868864.
      View in: PubMed   Mentions:    Fields:    
    11. scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. Genome Biol. 2019 09 09; 20(1):193. Li R, Quon G. PMID: 31500668; PMCID: PMC6734238.
      View in: PubMed   Mentions: 11     Fields:    
    12. Conserved cell types with divergent features in human versus mouse cortex. Nature. 2019 09; 573(7772):61-68. Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, Aevermann B, Beller A, Bertagnolli D, Brouner K, Casper T, Cobbs C, Dalley R, Dee N, Ding SL, Ellenbogen RG, Fong O, Garren E, Goldy J, Gwinn RP, Hirschstein D, Keene CD, Keshk M, Ko AL, Lathia K, Mahfouz A, Maltzer Z, McGraw M, Nguyen TN, Nyhus J, Ojemann JG, Oldre A, Parry S, Reynolds S, Rimorin C, Shapovalova NV, Somasundaram S, Szafer A, Thomsen ER, Tieu M, Quon G, Scheuermann RH, Yuste R, Sunkin SM, Lelieveldt B, Feng D, Ng L, Bernard A, Hawrylycz M, Phillips JW, Tasic B, Zeng H, Jones AR, Koch C, Lein ES. PMID: 31435019; PMCID: PMC6919571.
      View in: PubMed   Mentions: 648     Fields:    Translation:HumansAnimalsCells
    13. scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data. Genome Biol. 2019 08 14; 20(1):166. Johansen N, Quon G. PMID: 31412909; PMCID: PMC6693154.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansAnimalsCells
    14. Network Infusion to Infer Information Sources in Networks. IEEE Transactions on Network Science and Engineering. 2019 Jul 1; 6(3):402-417. Feizi FS, Medard MM, Quon QG, Kellis KM, Duffy DK. .
      View in: Publisher Site   Mentions:
    15. A Plug-and-Play, Drug-on-Pillar Platform for Combination Drug Screening Implemented by Microfluidic Adaptive Printing. Anal Chem. 2018 12 04; 90(23):13969-13977. Li J, Tan W, Xiao W, Carney RP, Men Y, Li Y, Quon G, Ajena Y, Lam KS, Pan T. PMID: 30358386; PMCID: PMC6467812.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    16. Genetic effects on gene expression across human tissues. Nature. 2017 10 11; 550(7675):204-213. GTEx Consortium, Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group, Statistical Methods groups—Analysis Working Group, Enhancing GTEx (eGTEx) groups, NIH Common Fund, NIH/NCI, NIH/NHGRI, NIH/NIMH, NIH/NIDA, Biospecimen Collection Source Site—NDRI, Biospecimen Collection Source Site—RPCI, Biospecimen Core Resource—VARI, Brain Bank Repository—University of Miami Brain Endowment Bank, Leidos Biomedical—Project Management, ELSI Study, Genome Browser Data Integration &Visualization—EBI, Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California San, Lead analysts:, Laboratory, Data Analysis &Coordinating Center (LDACC):, NIH program management:, Biospecimen collection:, Pathology:, eQTL manuscript working group:, Battle A, Brown CD, Engelhardt BE, Montgomery SB. PMID: 29022597; PMCID: PMC5776756.
      View in: PubMed   Mentions: 1686     Fields:    Translation:HumansCells
    17. Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis. PLoS One. 2016; 11(5):e0156055. Cui A, Quon G, Rosenberg AM, Yeung RS, Morris Q, BBOP Study Consortium. PMID: 27244050; PMCID: PMC4887077.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    18. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Nat Methods. 2016 Apr; 13(4):366-70. Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, Bergmann S. PMID: 26950747; PMCID: PMC4967716.
      View in: PubMed   Mentions: 153     Fields:    Translation:HumansCells
    19. Probabilistic Modeling of Imaging, Genetics and Diagnosis. IEEE Trans Med Imaging. 2016 07; 35(7):1765-79. Batmanghelich NK, Dalca A, Quon G, Sabuncu M, Golland P. PMID: 26886973; PMCID: PMC5364030.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    20. FTO Obesity Variant Circuitry and Adipocyte Browning in Humans. N Engl J Med. 2015 Sep 03; 373(10):895-907. Claussnitzer M, Dankel SN, Kim KH, Quon G, Meuleman W, Haugen C, Glunk V, Sousa IS, Beaudry JL, Puviindran V, Abdennur NA, Liu J, Svensson PA, Hsu YH, Drucker DJ, Mellgren G, Hui CC, Hauner H, Kellis M. PMID: 26287746; PMCID: PMC4959911.
      View in: PubMed   Mentions: 626     Fields:    Translation:HumansAnimalsCells
    21. ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles. BMC Bioinformatics. 2015 May 14; 16:156. Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC. PMID: 25972088; PMCID: PMC4429941.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    22. Integrative analysis of 111 reference human epigenomes. Nature. 2015 Feb 19; 518(7539):317-30. Roadmap Epigenomics Consortium, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M. PMID: 25693563; PMCID: PMC4530010.
      View in: PubMed   Mentions: 3026     Fields:    Translation:HumansCells
    23. Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease. Nature. 2015 Feb 19; 518(7539):365-9. Gjoneska E, Pfenning AR, Mathys H, Quon G, Kundaje A, Tsai LH, Kellis M. PMID: 25693568; PMCID: PMC4530583.
      View in: PubMed   Mentions: 287     Fields:    Translation:HumansAnimalsCells
    24. Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction. Genome Med. 2013 Mar 28; 5(3):29. Quon G, Haider S, Deshwar AG, Cui A, Boutros PC, Morris Q. PMID: 23537167; PMCID: PMC3706990.
      View in: PubMed   Mentions: 49     Fields:    
    25. Patterns of methylation heritability in a genome-wide analysis of four brain regions. Nucleic Acids Res. 2013 Feb 01; 41(4):2095-104. Quon G, Lippert C, Heckerman D, Listgarten J. PMID: 23303775; PMCID: PMC3575819.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    26. The benefits of selecting phenotype-specific variants for applications of mixed models in genomics. Sci Rep. 2013; 3:1815. Lippert C, Quon G, Kang EY, Kadie CM, Listgarten J, Heckerman D. PMID: 23657357; PMCID: PMC3648840.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    27. PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions. PLoS Comput Biol. 2012; 8(12):e1002838. Qiao W, Quon G, Csaszar E, Yu M, Morris Q, Zandstra PW. PMID: 23284283; PMCID: PMC3527275.
      View in: PubMed   Mentions: 63     Fields:    Translation:Humans
    28. Unsupervised detection of genes of influence in lung cancer using biological networks. Bioinformatics. 2011 Nov 15; 27(22):3166-72. Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD. PMID: 21965819.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    29. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. RNA. 2010 Jun; 16(6):1096-107. Li X, Quon G, Lipshitz HD, Morris Q. PMID: 20418358; PMCID: PMC2874161.
      View in: PubMed   Mentions: 103     Fields:    Translation:HumansAnimalsCells
    30. ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. Bioinformatics. 2009 Nov 01; 25(21):2882-9. Quon G, Morris Q. PMID: 19542156; PMCID: PMC2781747.
      View in: PubMed   Mentions: 22     Fields:    
    31. Conservation of core gene expression in vertebrate tissues. J Biol. 2009; 8(3):33. Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR. PMID: 19371447; PMCID: PMC2689434.
      View in: PubMed   Mentions: 102     Fields:    Translation:HumansAnimalsCells
    32. Nh3D: a reference dataset of non-homologous protein structures. BMC Struct Biol. 2005 Jul 12; 5:12. Thiruv B, Quon G, Saldanha SA, Steipe B. PMID: 16011803; PMCID: PMC1182382.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    33. Jabiru: harnessing Java 3D behaviors for device and display portability. IEEE Comput Graph Appl. 2005 Mar-Apr; 25(2):70-80. Stromer JN, Quon GT, Gordon PM, Turinsky AL, Sensen CW. PMID: 15794151.
      View in: PubMed   Mentions: 1     Fields:    
    34. Pegasys: software for executing and integrating analyses of biological sequences. BMC Bioinformatics. 2004 Apr 19; 5:40. Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF. PMID: 15096276; PMCID: PMC406494.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    35. 4D bioinformatics: a new look at the ribosome as an example. IUBMB Life. 2003 Apr-May; 55(4-5):279-83. Quon GT, Gordon P, Sensen CW. PMID: 12880210.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
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