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Gerald Quon

Title(s)Assistant Professor, Molecular and Cellular Biology
SchoolUniversity of California, Davis
Phone530-752-8263
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Li R, Quon G. Correction to: scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. Genome Biol. 2019 11 21; 20(1):247. PMID: 31752962.
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    2. Li R, Quon G. scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. Genome Biol. 2019 09 09; 20(1):193. PMID: 31500668.
      View in: PubMed
    3. Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, Aevermann B, Beller A, Bertagnolli D, Brouner K, Casper T, Cobbs C, Dalley R, Dee N, Ding SL, Ellenbogen RG, Fong O, Garren E, Goldy J, Gwinn RP, Hirschstein D, Keene CD, Keshk M, Ko AL, Lathia K, Mahfouz A, Maltzer Z, McGraw M, Nguyen TN, Nyhus J, Ojemann JG, Oldre A, Parry S, Reynolds S, Rimorin C, Shapovalova NV, Somasundaram S, Szafer A, Thomsen ER, Tieu M, Quon G, Scheuermann RH, Yuste R, Sunkin SM, Lelieveldt B, Feng D, Ng L, Bernard A, Hawrylycz M, Phillips JW, Tasic B, Zeng H, Jones AR, Koch C, Lein ES. Conserved cell types with divergent features in human versus mouse cortex. Nature. 2019 Sep; 573(7772):61-68. PMID: 31435019.
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    4. Johansen N, Quon G. scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data. Genome Biol. 2019 08 14; 20(1):166. PMID: 31412909.
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    5. Li J, Tan W, Xiao W, Carney RP, Men Y, Li Y, Quon G, Ajena Y, Lam KS, Pan T. A Plug-and-Play, Drug-on-Pillar Platform for Combination Drug Screening Implemented by Microfluidic Adaptive Printing. Anal Chem. 2018 12 04; 90(23):13969-13977. PMID: 30358386.
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    6. Battle A, Brown CD, Engelhardt BE, Montgomery SB. Genetic effects on gene expression across human tissues. Nature. 2017 10 11; 550(7675):204-213. PMID: 29022597.
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    7. Cui A, Quon G, Rosenberg AM, Yeung RS, Morris Q. Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis. PLoS One. 2016; 11(5):e0156055. PMID: 27244050.
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    8. Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, Bergmann S. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Nat Methods. 2016 Apr; 13(4):366-70. PMID: 26950747.
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    9. Batmanghelich NK, Dalca A, Quon G, Sabuncu M, Golland P. Probabilistic Modeling of Imaging, Genetics and Diagnosis. IEEE Trans Med Imaging. 2016 07; 35(7):1765-79. PMID: 26886973.
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    10. Claussnitzer M, Dankel SN, Kim KH, Quon G, Meuleman W, Haugen C, Glunk V, Sousa IS, Beaudry JL, Puviindran V, Abdennur NA, Liu J, Svensson PA, Hsu YH, Drucker DJ, Mellgren G, Hui CC, Hauner H, Kellis M. FTO Obesity Variant Circuitry and Adipocyte Browning in Humans. N Engl J Med. 2015 Sep 03; 373(10):895-907. PMID: 26287746.
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    11. Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC. ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles. BMC Bioinformatics. 2015 May 14; 16:156. PMID: 25972088.
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    12. Gjoneska E, Pfenning AR, Mathys H, Quon G, Kundaje A, Tsai LH, Kellis M. Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease. Nature. 2015 Feb 19; 518(7539):365-9. PMID: 25693568.
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    13. Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M. Integrative analysis of 111 reference human epigenomes. Nature. 2015 Feb 19; 518(7539):317-30. PMID: 25693563.
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    14. Quon G, Haider S, Deshwar AG, Cui A, Boutros PC, Morris Q. Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction. Genome Med. 2013 Mar 28; 5(3):29. PMID: 23537167.
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    15. Quon G, Lippert C, Heckerman D, Listgarten J. Patterns of methylation heritability in a genome-wide analysis of four brain regions. Nucleic Acids Res. 2013 Feb 01; 41(4):2095-104. PMID: 23303775.
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    16. Lippert C, Quon G, Kang EY, Kadie CM, Listgarten J, Heckerman D. The benefits of selecting phenotype-specific variants for applications of mixed models in genomics. Sci Rep. 2013; 3:1815. PMID: 23657357.
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    17. Qiao W, Quon G, Csaszar E, Yu M, Morris Q, Zandstra PW. PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions. PLoS Comput Biol. 2012; 8(12):e1002838. PMID: 23284283.
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    18. Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD. Unsupervised detection of genes of influence in lung cancer using biological networks. Bioinformatics. 2011 Nov 15; 27(22):3166-72. PMID: 21965819.
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    19. Li X, Quon G, Lipshitz HD, Morris Q. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. RNA. 2010 Jun; 16(6):1096-107. PMID: 20418358.
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    20. Quon G, Morris Q. ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. Bioinformatics. 2009 Nov 01; 25(21):2882-9. PMID: 19542156.
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    21. Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR. Conservation of core gene expression in vertebrate tissues. J Biol. 2009; 8(3):33. PMID: 19371447.
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    22. Thiruv B, Quon G, Saldanha SA, Steipe B. Nh3D: a reference dataset of non-homologous protein structures. BMC Struct Biol. 2005 Jul 12; 5:12. PMID: 16011803.
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    23. Stromer JN, Quon GT, Gordon PM, Turinsky AL, Sensen CW. Jabiru: harnessing Java 3D behaviors for device and display portability. IEEE Comput Graph Appl. 2005 Mar-Apr; 25(2):70-80. PMID: 15794151.
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    24. Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF. Pegasys: software for executing and integrating analyses of biological sequences. BMC Bioinformatics. 2004 Apr 19; 5:40. PMID: 15096276.
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    25. Quon GT, Gordon P, Sensen CW. 4D bioinformatics: a new look at the ribosome as an example. IUBMB Life. 2003 Apr-May; 55(4-5):279-83. PMID: 12880210.
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