Lark L A Coffey

TitleAssistant Professor
InstitutionUniversity of California Davis
DepartmentPathology, Microbiology and Immunology
Address1 Shields Ave
CA 95616
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Sadeghi M, Altan E, Deng X, Barker CM, Fang Y, Coffey LL, Delwart E. Virome of >?12 thousand Culex mosquitoes from throughout California. Virology. 2018 Aug 08; 523:74-88. PMID: 30098450.
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    2. Dudley DM, Van Rompay KK, Coffey LL, Ardeshir A, Keesler RI, Bliss-Moreau E, Grigsby PL, Steinbach RJ, Hirsch AJ, MacAllister RP, Pecoraro HL, Colgin LM, Hodge T, Streblow DN, Tardif S, Patterson JL, Tamhankar M, Seferovic M, Aagaard KM, Martín CS, Chiu CY, Panganiban AT, Veazey RS, Wang X, Maness NJ, Gilbert MH, Bohm RP, Adams Waldorf KM, Gale M, Rajagopal L, Hotchkiss CE, Mohr EL, Capuano SV, Simmons HA, Mejia A, Friedrich TC, Golos TG, O'Connor DH. Miscarriage and stillbirth following maternal Zika virus infection in nonhuman primates. Nat Med. 2018 Jul 02. PMID: 29967348.
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    3. Main BJ, Nicholson J, Winokur OC, Steiner C, Riemersma KK, Stuart J, Takeshita R, Krasnec M, Barker CM, Coffey LL. Vector competence of Aedes aegypti, Culex tarsalis, and Culex quinquefasciatus from California for Zika virus. PLoS Negl Trop Dis. 2018 06; 12(6):e0006524. PMID: 29927940.
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    4. Coffey LL, Keesler RI, Pesavento PA, Woolard K, Singapuri A, Watanabe J, Cruzen C, Christe KL, Usachenko J, Yee J, Heng VA, Bliss-Moreau E, Reader JR, von Morgenland W, Gibbons AM, Jackson K, Ardeshir A, Heimsath H, Permar S, Senthamaraikannan P, Presicce P, Kallapur SG, Linnen JM, Gao K, Orr R, MacGill T, McClure M, McFarland R, Morrison JH, Van Rompay KKA. Intraamniotic Zika virus inoculation of pregnant rhesus macaques produces fetal neurologic disease. Nat Commun. 2018 Jun 20; 9(1):2414. PMID: 29925843.
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    5. Chen R, Mukhopadhyay S, Merits A, Bolling B, Nasar F, Coffey LL, Powers A, Weaver SC. ICTV Virus Taxonomy Profile: Togaviridae. J Gen Virol. 2018 Jun; 99(6):761-762. PMID: 29745869.
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    6. Steiner CD, Riemersma KK, Stuart JB, Singapuri A, Lothrop HD, Coffey LL. Scented Sugar Baits Enhance Detection of St. Louis Encephalitis and West Nile Viruses in Mosquitoes in Suburban California. J Med Entomol. 2018 Apr 27. PMID: 29718284.
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    7. Prow NA, Mah MG, Deerain JM, Warrilow D, Colmant AMG, O'Brien CA, Harrison JJ, McLean BJ, Hewlett EK, Piyasena TBH, Hall-Mendelin S, van den Hurk AF, Watterson D, Huang B, Schulz BL, Webb CE, Johansen CA, Chow WK, Hobson-Peters J, Cazier C, Coffey LL, Faddy HM, Suhrbier A, Bielefeldt-Ohmann H, Hall RA. New genotypes of Liao ning virus (LNV) in Australia exhibit an insect-specific phenotype. J Gen Virol. 2018 Apr; 99(4):596-609. PMID: 29533743.
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    8. Chiu CY, Coffey LL, Murkey J, Symmes K, Sample HA, Wilson MR, Naccache SN, Arevalo S, Somasekar S, Federman S, Stryke D, Vespa P, Schiller G, Messenger S, Humphries R, Miller S, Klausner JD. Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016. Emerg Infect Dis. 2017 10; 23(10):1964-1968. PMID: 28930022.
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    9. Stone M, Lanteri MC, Bakkour S, Deng X, Galel SA, Linnen JM, Muñoz-Jordán JL, Lanciotti RS, Rios M, Gallian P, Musso D, Levi JE, Sabino EC, Coffey LL, Busch MP. Relative analytical sensitivity of donor nucleic acid amplification technology screening and diagnostic real-time polymerase chain reaction assays for detection of Zika virus RNA. Transfusion. 2017 03; 57(3pt2):734-747. PMID: 28194799.
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    10. Coffey LL, Pesavento PA, Keesler RI, Singapuri A, Watanabe J, Watanabe R, Yee J, Bliss-Moreau E, Cruzen C, Christe KL, Reader JR, von Morgenland W, Gibbons AM, Allen AM, Linnen J, Gao K, Delwart E, Simmons G, Stone M, Lanteri M, Bakkour S, Busch M, Morrison J, Van Rompay KK. Zika Virus Tissue and Blood Compartmentalization in Acute Infection of Rhesus Macaques. PLoS One. 2017; 12(1):e0171148. PMID: 28141843.
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    11. White GS, Symmes K, Sun P, Fang Y, Garcia S, Steiner C, Smith K, Reisen WK, Coffey LL. Reemergence of St. Louis Encephalitis Virus, California, 2015. Emerg Infect Dis. 2016 12; 22(12):2185-2188. PMID: 27869600.
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    12. Coffey LL, Reisen WK. West Nile Virus Fitness Costs in Different Mosquito Species. Trends Microbiol. 2016 06; 24(6):429-430. PMID: 27108207.
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    13. Ball CS, Light YK, Koh CY, Wheeler SS, Coffey LL, Meagher RJ. Quenching of Unincorporated Amplification Signal Reporters in Reverse-Transcription Loop-Mediated Isothermal Amplification Enabling Bright, Single-Step, Closed-Tube, and Multiplexed Detection of RNA Viruses. Anal Chem. 2016 Apr 05; 88(7):3562-8. PMID: 26980448.
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    14. Wheeler SS, Ball CS, Langevin SA, Fang Y, Coffey LL, Meagher RJ. Surveillance for Western Equine Encephalitis, St. Louis Encephalitis, and West Nile Viruses Using Reverse Transcription Loop-Mediated Isothermal Amplification. PLoS One. 2016; 11(1):e0147962. PMID: 26807734; PMCID: PMC4726549.
    15. Kuhn JH, Lauck M, Bailey AL, Shchetinin AM, Vishnevskaya TV, Bào Y, Ng TF, LeBreton M, Schneider BS, Gillis A, Tamoufe U, Diffo Jle D, Takuo JM, Kondov NO, Coffey LL, Wolfe ND, Delwart E, Clawson AN, Postnikova E, Bollinger L, Lackemeyer MG, Radoshitzky SR, Palacios G, Wada J, Shevtsova ZV, Jahrling PB, Lapin BA, Deriabin PG, Dunowska M, Alkhovsky SV, Rogers J, Friedrich TC, O'Connor DH, Goldberg TL. Reorganization and expansion of the nidoviral family Arteriviridae. Arch Virol. 2016 Mar; 161(3):755-68. PMID: 26608064.
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    16. Coffey LL, Failloux AB, Weaver SC. Chikungunya virus-vector interactions. Viruses. 2014 Nov 24; 6(11):4628-63. PMID: 25421891; PMCID: PMC4246241.
    17. Forrester NL, Coffey LL, Weaver SC. Arboviral bottlenecks and challenges to maintaining diversity and fitness during mosquito transmission. Viruses. 2014 Oct 23; 6(10):3991-4004. PMID: 25341663; PMCID: PMC4213574.
    18. Stapleford KA, Coffey LL, Lay S, Bordería AV, Duong V, Isakov O, Rozen-Gagnon K, Arias-Goeta C, Blanc H, Beaucourt S, Haliloglu T, Schmitt C, Bonne I, Ben-Tal N, Shomron N, Failloux AB, Buchy P, Vignuzzi M. Emergence and transmission of arbovirus evolutionary intermediates with epidemic potential. Cell Host Microbe. 2014 Jun 11; 15(6):706-16. PMID: 24922573.
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    19. Coffey LL, Page BL, Greninger AL, Herring BL, Russell RC, Doggett SL, Haniotis J, Wang C, Deng X, Delwart EL. Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes. Virology. 2014 Jan 05; 448:146-58. PMID: 24314645; PMCID: PMC3870893.
    20. Naccache SN, Greninger AL, Lee D, Coffey LL, Phan T, Rein-Weston A, Aronsohn A, Hackett J, Delwart EL, Chiu CY. The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. J Virol. 2013 Nov; 87(22):11966-77. PMID: 24027301; PMCID: PMC3807889.
    21. Li L, Pesavento PA, Leutenegger CM, Estrada M, Coffey LL, Naccache SN, Samayoa E, Chiu C, Qiu J, Wang C, Deng X, Delwart E. A novel bocavirus in canine liver. Virol J. 2013 Feb 13; 10:54. PMID: 23402347; PMCID: PMC3577433.
    22. Coffey LL, Forrester N, Tsetsarkin K, Vasilakis N, Weaver SC. Factors shaping the adaptive landscape for arboviruses: implications for the emergence of disease. Future Microbiol. 2013 Feb; 8(2):155-76. PMID: 23374123; PMCID: PMC3621119.
    23. Cockburn JJ, Navarro Sanchez ME, Fretes N, Urvoas A, Staropoli I, Kikuti CM, Coffey LL, Arenzana Seisdedos F, Bedouelle H, Rey FA. Mechanism of dengue virus broad cross-neutralization by a monoclonal antibody. Structure. 2012 Feb 08; 20(2):303-14. PMID: 22285214.
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    24. Coffey LL, Beeharry Y, Bordería AV, Blanc H, Vignuzzi M. Arbovirus high fidelity variant loses fitness in mosquitoes and mice. Proc Natl Acad Sci U S A. 2011 Sep 20; 108(38):16038-43. PMID: 21896755; PMCID: PMC3179076.
    25. Beaucourt S, Bordería AV, Coffey LL, Gnädig NF, Sanz-Ramos M, Beeharry Y, Vignuzzi M. Isolation of fidelity variants of RNA viruses and characterization of virus mutation frequency. J Vis Exp. 2011 Jun 16; (52). PMID: 21712796; PMCID: PMC3197063.
    26. Coffey LL, Vignuzzi M. Host alternation of chikungunya virus increases fitness while restricting population diversity and adaptability to novel selective pressures. J Virol. 2011 Jan; 85(2):1025-35. PMID: 21047966; PMCID: PMC3020036.
    27. Schneider BS, Soong L, Coffey LL, Stevenson HL, McGee CE, Higgs S. Aedes aegypti saliva alters leukocyte recruitment and cytokine signaling by antigen-presenting cells during West Nile virus infection. PLoS One. 2010 Jul 22; 5(7):e11704. PMID: 20661470; PMCID: PMC2908538.
    28. Coffey LL, Mertens E, Brehin AC, Fernandez-Garcia MD, Amara A, Després P, Sakuntabhai A. Human genetic determinants of dengue virus susceptibility. Microbes Infect. 2009 Feb; 11(2):143-56. PMID: 19121645.
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    29. Coffey LL, Vasilakis N, Brault AC, Powers AM, Tripet F, Weaver SC. Arbovirus evolution in vivo is constrained by host alternation. Proc Natl Acad Sci U S A. 2008 May 13; 105(19):6970-5. PMID: 18458341; PMCID: PMC2383930.
    30. Carrara AS, Coffey LL, Aguilar PV, Moncayo AC, Da Rosa AP, Nunes MR, Tesh RB, Weaver SC. Venezuelan equine encephalitis virus infection of cotton rats. Emerg Infect Dis. 2007 Aug; 13(8):1158-65. PMID: 17953085; PMCID: PMC2828070.
    31. Ozden S, Huerre M, Riviere JP, Coffey LL, Afonso PV, Mouly V, de Monredon J, Roger JC, El Amrani M, Yvin JL, Jaffar MC, Frenkiel MP, Sourisseau M, Schwartz O, Butler-Browne G, Desprès P, Gessain A, Ceccaldi PE. Human muscle satellite cells as targets of Chikungunya virus infection. PLoS One. 2007 Jun 13; 2(6):e527. PMID: 17565380; PMCID: PMC1885285.
    32. Coffey LL, Crawford C, Dee J, Miller R, Freier J, Weaver SC. Serologic evidence of widespread everglades virus activity in dogs, Florida. Emerg Infect Dis. 2006 Dec; 12(12):1873-9. PMID: 17326938; PMCID: PMC3291350.
    33. Smith DR, Aguilar PV, Coffey LL, Gromowski GD, Wang E, Weaver SC. Venezuelan equine encephalitis virus transmission and effect on pathogenesis. Emerg Infect Dis. 2006 Aug; 12(8):1190-6. PMID: 16965696; PMCID: PMC3291203.
    34. Navarro JC, Medina G, Vasquez C, Coffey LL, Wang E, Suárez A, Biord H, Salas M, Weaver SC. Postepizootic persistence of Venezuelan equine encephalitis virus, Venezuela. Emerg Infect Dis. 2005 Dec; 11(12):1907-15. PMID: 16485478; PMCID: PMC3367636.
    35. Diallo M, Sall AA, Moncayo AC, Ba Y, Fernandez Z, Ortiz D, Coffey LL, Mathiot C, Tesh RB, Weaver SC. Potential role of sylvatic and domestic African mosquito species in dengue emergence. Am J Trop Med Hyg. 2005 Aug; 73(2):445-9. PMID: 16103619.
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    36. Coffey LL, Weaver SC. Susceptibility of Ochlerotatus taeniorhynchus and Culex nigripalpus for Eeverglades virus. Am J Trop Med Hyg. 2005 Jul; 73(1):11-6. PMID: 16014824.
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    37. Wang E, Paessler S, Aguilar PV, Smith DR, Coffey LL, Kang W, Pfeffer M, Olson J, Blair PJ, Guevara C, Estrada-Franco J, Weaver SC. A novel, rapid assay for detection and differentiation of serotype-specific antibodies to Venezuelan equine encephalitis complex alphaviruses. Am J Trop Med Hyg. 2005 Jun; 72(6):805-10. PMID: 15964967.
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    38. Coffey LL, Carrara AS, Paessler S, Haynie ML, Bradley RD, Tesh RB, Weaver SC. Experimental Everglades virus infection of cotton rats (Sigmodon hispidus). Emerg Infect Dis. 2004 Dec; 10(12):2182-8. PMID: 15663857; PMCID: PMC3323382.
    39. Moncayo AC, Fernandez Z, Ortiz D, Diallo M, Sall A, Hartman S, Davis CT, Coffey L, Mathiot CC, Tesh RB, Weaver SC. Dengue emergence and adaptation to peridomestic mosquitoes. Emerg Infect Dis. 2004 Oct; 10(10):1790-6. PMID: 15504265; PMCID: PMC3323252.
    40. Beasley DW, Holbrook MR, Travassos Da Rosa AP, Coffey L, Carrara AS, Phillippi-Falkenstein K, Bohm RP, Ratterree MS, Lillibridge KM, Ludwig GV, Estrada-Franco J, Weaver SC, Tesh RB, Shope RE, Barrett AD. Use of a recombinant envelope protein subunit antigen for specific serological diagnosis of West Nile virus infection. J Clin Microbiol. 2004 Jun; 42(6):2759-65. PMID: 15184463; PMCID: PMC427824.
    41. Aguilar PV, Greene IP, Coffey LL, Medina G, Moncayo AC, Anishchenko M, Ludwig GV, Turell MJ, O'Guinn ML, Lee J, Tesh RB, Watts DM, Russell KL, Hice C, Yanoviak S, Morrison AC, Klein TA, Dohm DJ, Guzman H, Travassos da Rosa AP, Guevara C, Kochel T, Olson J, Cabezas C, Weaver SC. Endemic Venezuelan equine encephalitis in northern Peru. Emerg Infect Dis. 2004 May; 10(5):880-8. PMID: 15200823; PMCID: PMC3323213.
    42. Estrada-Franco JG, Navarro-Lopez R, Beasley DW, Coffey L, Carrara AS, Travassos da Rosa A, Clements T, Wang E, Ludwig GV, Cortes AC, Ramírez PP, Tesh RB, Barrett AD, Weaver SC. West Nile virus in Mexico: evidence of widespread circulation since July 2002. Emerg Infect Dis. 2003 Dec; 9(12):1604-7. PMID: 14720402; PMCID: PMC3034333.
    43. Travassos da Rosa AP, Mather TN, Takeda T, Whitehouse CA, Shope RE, Popov VL, Guzman H, Coffey L, Araujo TP, Tesh RB. Two new rhabdoviruses (Rhabdoviridae) isolated from birds during surveillance for arboviral encephalitis, northeastern United States. Emerg Infect Dis. 2002 Jun; 8(6):614-8. PMID: 12023919; PMCID: PMC2738478.