Farzad Fereidouni

Title(s)Associate Adjunct Professor, MED: Pathology & Lab Medicine
SchoolSchool of Medicine
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. NerveTracker: a Python-based software toolkit for visualizing and tracking groups of nerve fibers in serial block-face microscopy with ultraviolet surface excitation images. J Biomed Opt. 2024 Jul; 29(7):076501. Kolluru C, Joseph N, Seckler J, Fereidouni F, Levenson R, Shoffstall A, Jenkins M, Wilson D. PMID: 38912214; PMCID: PMC11188586.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    2. A Pilot Validation Study Comparing Fluorescence-Imitating Brightfield Imaging, A Slide-Free Imaging Method, With Standard Formalin-Fixed, Paraffin-Embedded Hematoxylin-Eosin-Stained Tissue Section Histology for Primary Surgical Pathology Diagnosis. Arch Pathol Lab Med. 2024 Mar 01; 148(3):345-352. Borowsky AD, Levenson RM, Gown AM, Morningstar T, Fleury TA, Henderson G, Schaberg K, Sybenga AB, Glassy EF, Taylor SL, Fereidouni F. PMID: 37226827.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    3. Neuropathological Applications of Microscopy with Ultraviolet Surface Excitation (MUSE): A Concordance Study of Human Primary and Metastatic Brain Tumors. Brain Sci. 2024 Jan 22; 14(1). Lechpammer M, Todd A, Tang V, Morningstar T, Borowsky A, Shahlaie K, Kintner JA, McPherson JD, Bishop JW, Fereidouni F, Harmany ZT, Coley N, Zagzag D, Wong JWH, Tao J, Hesson LB, Burnett L, Levenson R. PMID: 38275528; PMCID: PMC10813539.
      View in: PubMed   Mentions:
    4. Anatomy-Specific Classification Model Using Label-Free FLIm to Aid Intraoperative Surgical Guidance of Head and Neck Cancer. IEEE Trans Biomed Eng. 2023 10; 70(10):2863-2873. Hassan MA, Weyers BW, Bec J, Fereidouni F, Qi J, Gui D, Bewley AF, Abouyared M, Farwell DG, Birkeland AC, Marcu L. PMID: 37043314; PMCID: PMC10833893.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    5. Improving quantification of renal fibrosis using Deep-DUET. Proc SPIE Int Soc Opt Eng. 2023 Feb; 12471. Border S, Rosenberg A, Zee J, Levenson R, Jen KY, Sarder P, Fereidouni F. PMID: 37829619; PMCID: PMC10568542.
      View in: PubMed   Mentions:
    6. Utility of fluorescence imitating brightfield imaging microscopy for the diagnosis of feline chronic enteropathy. Vet Pathol. 2023 01; 60(1):52-59. Au Yeung S, Giaretta P, Morningstar T, Masuda E, Questa M, Fereidouni F, Levenson RM, Marsilio S. PMID: 36286074; PMCID: PMC9827481.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    7. Pilot study of fluorescence imitating brightfield imaging for rapid, slide-free dermatopathology. J Cutan Pathol. 2022 Dec; 49(12):1060-1066. Engel TN, Abraham TM, Morningstar T, Fung MA, Rangchi A, Kiuru M, Fereidouni F, Levenson R. PMID: 36053830.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. Imaging peripheral nerve micro-anatomy with MUSE, 2D and 3D approaches. Sci Rep. 2022 06 17; 12(1):10205. Kolluru C, Todd A, Upadhye AR, Liu Y, Berezin MY, Fereidouni F, Levenson RM, Wang Y, Shoffstall AJ, Jenkins MW, Wilson DL. PMID: 35715554; PMCID: PMC9205958.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    9. CoreView: fresh tissue biopsy assessment at the bedside using a millifluidic imaging chip. Lab Chip. 2022 03 29; 22(7):1354-1364. Cooper DJ, Huang C, Klavins DA, Fauver ME, Carson MD, Fereidouni F, Dintzis S, Galambos C, Levenson RM, Seibel EJ. PMID: 35212692; PMCID: PMC8967779.
      View in: PubMed   Mentions:    Fields:    
    10. First in patient assessment of brain tumor infiltrative margins using simultaneous time-resolved measurements of 5-ALA-induced PpIX fluorescence and tissue autofluorescence. J Biomed Opt. 2022 02; 27(2). Alfonso-García A, Zhou X, Bec J, Anbunesan SN, Fereidouni F, Jin LW, Lee HS, Bloch O, Marcu L. PMID: 35112514; PMCID: PMC8809358.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    11. Pocket MUSE: an affordable, versatile and high-performance fluorescence microscope using a smartphone. Commun Biol. 2021 03 12; 4(1):334. Liu Y, Rollins AM, Levenson RM, Fereidouni F, Jenkins MW. PMID: 33712728; PMCID: PMC7955119.
      View in: PubMed   Mentions: 17  Translation:HumansAnimalsCells
    12. 3D imaging of the vagus nerve fascicular anatomy with cryo-imaging and UV excitation. Proc SPIE Int Soc Opt Eng. 2021 Mar; 11649. Kolluru C, Subramaniam A, Liu Y, Upadhye A, Khela M, Druschel L, Fereidouni F, Levenson R, Shoffstall A, Jenkins M, Wilson DL. PMID: 35313654; PMCID: PMC8934573.
      View in: PubMed   Mentions: 1  
    13. Beyond brightfield: a possible future of slide scanners. Biotechniques. 2021 01; 70(1):5-6. Fereidouni F, Levenson R. PMID: 33228402; PMCID: PMC8376179.
      View in: PubMed   Mentions: 2     Fields:    
    14. Dual-mode emission and transmission microscopy for virtual histochemistry using hematoxylin- and eosin-stained tissue sections. Biomed Opt Express. 2019 Dec 01; 10(12):6516-6530. Fereidouni F, Todd A, Li Y, Chang CW, Luong K, Rosenberg A, Lee YJ, Chan JW, Borowsky A, Matsukuma K, Jen KY, Levenson R. PMID: 31853414; PMCID: PMC6913420.
      View in: PubMed   Mentions: 10  
    15. Microscopy with ultraviolet surface excitation (MUSE): A novel approach to real-time inexpensive slide-free dermatopathology. J Cutan Pathol. 2018 Jul; 45(7):498-503. Qorbani A, Fereidouni F, Levenson R, Lahoubi SY, Harmany ZT, Todd A, Fung MA. PMID: 29660167; PMCID: PMC6398597.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    16. Multispectral analysis tools can increase utility of RGB color images in histology. J Opt. 2018 Apr; 20(4). Fereidouni F, Griffin C, Todd A, Levenson R. PMID: 30847052; PMCID: PMC6398595.
      View in: PubMed   Mentions: 8  
    17. Microscopy with ultraviolet surface excitation for rapid slide-free histology. Nat Biomed Eng. 2017 12; 1(12):957-966. Fereidouni F, Harmany ZT, Tian M, Todd A, Kintner JA, McPherson JD, Borowsky AD, Bishop J, Bishop J, Lechpammer M, Demos SG, Levenson R. PMID: 31015706; PMCID: PMC6223324.
      View in: PubMed   Mentions: 108     Fields:    Translation:HumansAnimals
    18. Rapid fluorescence lifetime estimation with modified phasor approach and Laguerre deconvolution: a comparative study. Methods Appl Fluoresc. 2017 09 01; 5(3):035003. Fereidouni F, Gorpas D, Ma D, Fatakdawala H, Marcu L. PMID: 28644150; PMCID: PMC6043162.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    19. Using spectral decomposition of the signals from laurdan-derived probes to evaluate the physical state of membranes in live cells. F1000Res. 2017; 6:763. Mazeres S, Fereidouni F, Joly E. PMID: 28663788; PMCID: PMC5473435.
      View in: PubMed   Mentions: 8     Fields:    
    20. Multi-component quantitative magnetic resonance imaging by phasor representation. Sci Rep. 2017 04 13; 7(1):861. Vergeldt FJ, Prusova A, Fereidouni F, Amerongen HV, Van As H, Scheenen TWJ, Bader AN. PMID: 28408740; PMCID: PMC5429833.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    21. Spectral Unmixing Methods and Tools for the Detection and Quantitation of Collagen and Other Macromolecules in Tissue Specimens. Methods Mol Biol. 2017; 1627:491-509. Harmany ZT, Fereidouni F, Levenson RM. PMID: 28836220.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    22. Real-time, High-resolution, In Vivo Characterization of Superficial Skin With Microscopy Using Ultraviolet Surface Excitation (MUSE). J Drugs Dermatol. 2016 Nov 01; 15(11):1344-1346. Ho D, Fereidouni F, Levenson RM, Jagdeo J. PMID: 28095545; PMCID: PMC6400476.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    23. Early BAFF receptor blockade mitigates murine Sjögren's syndrome: Concomitant targeting of CXCL13 and the BAFF receptor prevents salivary hypofunction. Clin Immunol. 2016 Mar; 164:85-94. Sharma A, Kiripolsky J, Klimatcheva E, Howell A, Fereidouni F, Levenson R, Rothstein TL, Kramer JM. PMID: 26826598; PMCID: PMC4780410.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    24. Phasor based analysis of FRET images recorded using spectrally resolved lifetime imaging. Methods Appl Fluoresc. 2014 May 14; 2(3):035001. Fereidouni F, Blab GA, Gerritsen HC. PMID: 29148469.
      View in: PubMed   Mentions: 7     Fields:    
    25. Endocytosis of EGFR requires its kinase activity and N-terminal transmembrane dimerization motif. J Cell Sci. 2013 Nov 01; 126(Pt 21):4900-12. Heukers R, Vermeulen JF, Fereidouni F, Bader AN, Voortman J, Roovers RC, Gerritsen HC, van Bergen En Henegouwen PM. PMID: 23943881.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    26. Blind unmixing of spectrally resolved lifetime images. J Biomed Opt. 2013 Aug; 18(8):86006. Fereidouni F, Blab GA, Gerritsen HC. PMID: 23942631.
      View in: PubMed   Mentions: 6     Fields:    
    27. High speed multispectral fluorescence lifetime imaging. Opt Express. 2013 May 20; 21(10):11769-82. Fereidouni F, Reitsma K, Gerritsen HC. PMID: 23736399.
      View in: PubMed   Mentions: 17     Fields:    
    28. Phasor analysis of multiphoton spectral images distinguishes autofluorescence components of in vivo human skin. J Biophotonics. 2014 Aug; 7(8):589-96. Fereidouni F, Bader AN, Colonna A, Gerritsen HC. PMID: 23576407.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCells
    29. Optimizing immuno-labeling for correlative fluorescence and electron microscopy on a single specimen. J Struct Biol. 2012 Nov; 180(2):382-6. Karreman MA, Agronskaia AV, van Donselaar EG, Vocking K, Fereidouni F, Humbel BM, Verrips CT, Verkleij AJ, Gerritsen HC. PMID: 22982545.
      View in: PubMed   Mentions: 10     Fields:    
    30. Spectral phasor analysis allows rapid and reliable unmixing of fluorescence microscopy spectral images. Opt Express. 2012 Jun 04; 20(12):12729-41. Fereidouni F, Bader AN, Gerritsen HC. PMID: 22714302.
      View in: PubMed   Mentions: 93     Fields:    Translation:AnimalsCells
    31. A modified phasor approach for analyzing time-gated fluorescence lifetime images. J Microsc. 2011 Dec; 244(3):248-58. Fereidouni F, Esposito A, Blab GA, Gerritsen HC. PMID: 21933184.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
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