Jinyi Qi

Title(s)Professor, Biomedical Engineering
SchoolEngineering
AddressGenome and Biomedical Sciences Building
CA 95616
Phone530-754-6142
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    Collapse Research 
    Collapse Research Activities and Funding
    Prism-PET/EMMT: High resolution, cost effective, portable, and upright brain PET scanner for early diagnosis of Alzheimer's disease
    NIH U01AG082845Sep 30, 2024 - Aug 31, 2029
    Role: Co-Investigator
    Positronium lifetime imaging using TOF PET
    NIH R21EB032101Jul 2, 2021 - Apr 30, 2023
    Role: Principal Investigator
    NeuroExplorer: Ultra-high Performance Human Brain PET Imager for Highly-resolved In Vivo Imaging of Neurochemistry
    NIH U01EB029811Sep 12, 2020 - Aug 31, 2025
    Role: Co-Principal Investigator
    Synergistic integration of deep learning and regularized image reconstruction for positron emission tomography
    NIH R21EB026668Aug 1, 2018 - May 31, 2021
    Role: Principal Investigator
    Iterative Image reconstruction for high-resolution PET imaging
    NIH R01EB005322Apr 1, 2007 - Mar 31, 2011
    Role: Principal Investigator
    Optimization of PET Imaging
    NIH R01EB000194Jul 1, 2002 - Jun 30, 2021
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Quantitative Accuracy Assessment of the NeuroEXPLORER for Diverse Imaging Applications: Moving Beyond Standard Evaluations. J Nucl Med. 2024 Dec 05. Omidvari N, Shanina E, Leung EK, Sun X, Li Y, Mulnix T, Gravel P, Henry S, Matuskey D, Volpi T, Jones T, Badawi RD, Li H, Carson RE, Qi J, Cherry SR. PMID: 39638433.
      View in: PubMed   Mentions:    Fields:    
    2. High-resolution positronium lifetime tomography by the method of moments. Phys Med Biol. 2024 Dec 04; 69(24). Huang B, Qi J. PMID: 39569940.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Feasibility of PET-enabled dual-energy CT imaging: First physical phantom and initial patient results. ArXiv. 2024 Nov 19. Zhu Y, Li S, Xie Z, Leung EK, Bayerlein R, Omidvari N, Abdelhafez YG, Cherry SR, Qi J, Badawi RD, Spencer BA, Wang G. PMID: 38351944; PMCID: PMC10862937.
      View in: PubMed   Mentions:
    4. Feasibility of PET-enabled dual-energy CT imaging: First physical phantom and initial patient study results. Eur J Nucl Med Mol Imaging. 2024 Nov 16. Zhu Y, Li S, Xie Z, Leung EK, Bayerlein R, Omidvari N, Abdelhafez YG, Cherry SR, Qi J, Badawi RD, Spencer BA, Wang G. PMID: 39549045.
      View in: PubMed   Mentions:    Fields:    
    5. PICASSO: a universal brain phantom for positron emission tomography based on the activity painting technique. Phys Med Biol. 2024 Oct 23; 69(21). Shanina E, Spencer BA, Li T, Huang B, Qi J, Cherry SR. PMID: 39378896.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Early Detection of Lymph Node Metastasis Using Primary Head and Neck Cancer Computed Tomography and Fluorescence Lifetime Imaging. Diagnostics (Basel). 2024 Sep 23; 14(18). Yuan N, Hassan MA, Ehrlich K, Weyers BW, Biddle G, Ivanovic V, Raslan OAA, Gui D, Abouyared M, Bewley AF, Birkeland AC, Farwell DG, Marcu L, Qi J. PMID: 39335776; PMCID: PMC11430879.
      View in: PubMed   Mentions:
    7. Refining penalty parameter selection in whole-body PET image reconstruction for lung cancer patients using the cross-validation log-likelihood method. Phys Med Biol. 2024 Sep 03; 69(18). Wang Q, Abdelhafez YG, Nalbant H, Spencer BA, Bayerlein R, Qi J, Cherry SR, Nardo L, Badawi RD. PMID: 39168154; PMCID: PMC11500750.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. Performance Characteristics of the NeuroEXPLORER, a Next-Generation Human Brain PET/CT Imager. J Nucl Med. 2024 Aug 01; 65(8):1320-1326. Li H, Badawi RD, Cherry SR, Fontaine K, He L, Henry S, Hillmer AT, Hu L, Khattar N, Leung EK, Li T, Li Y, Liu C, Liu P, Lu Z, Majewski S, Matuskey D, Morris ED, Mulnix T, Omidvari N, Samanta S, Selfridge A, Sun X, Toyonaga T, Volpi T, Zeng T, Jones T, Qi J, Carson RE. PMID: 38871391; PMCID: PMC11294061.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    9. Real-time motion-enabling positron emission tomography of the brain of upright ambulatory humans. Commun Med (Lond). 2024 Jun 13; 4(1):117. Siva NK, Bauer C, Glover C, Stolin A, Chandi S, Melnick H, Marano G, Parker B, Mandich M, Lewis JW, Qi J, Gao S, Nott K, Majewski S, Brefczynski-Lewis JA. PMID: 38872007; PMCID: PMC11176317.
      View in: PubMed   Mentions:
    10. SPLIT: Statistical Positronium Lifetime Image Reconstruction via Time-Thresholding. IEEE Trans Med Imaging. 2024 Jun; 43(6):2148-2158. Huang B, Li T, Arino-Estrada G, Dulski K, Shopa RY, Moskal P, Stepien E, Qi J. PMID: 38261489; PMCID: PMC11409919.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    11. Optimization-derived blood input function using a kernel method and its evaluation with total-body PET for brain parametric imaging. Neuroimage. 2024 Jun; 293:120611. Zhu Y, Tran Q, Wang Y, Badawi RD, Cherry SR, Qi J, Abbaszadeh S, Wang G. PMID: 38643890; PMCID: PMC11251003.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    12. Anatomy-Specific Classification Model Using Label-Free FLIm to Aid Intraoperative Surgical Guidance of Head and Neck Cancer. IEEE Trans Biomed Eng. 2023 10; 70(10):2863-2873. Hassan MA, Weyers BW, Bec J, Fereidouni F, Qi J, Gui D, Bewley AF, Abouyared M, Farwell DG, Birkeland AC, Marcu L. PMID: 37043314; PMCID: PMC10833893.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    13. Unsupervised deep learning framework for data-driven gating in positron emission tomography. Med Phys. 2023 Oct; 50(10):6047-6059. Li T, Xie Z, Qi W, Asma E, Qi J. PMID: 37538038; PMCID: PMC10592231.
      View in: PubMed   Mentions: 1     Fields:    
    14. Super-resolution reconstruction of γ-ray CT images for PET-enabled dual-energy CT imaging. Proc SPIE Int Soc Opt Eng. 2024 Feb; 12463. Zhu Y, Spencer BA, Xie Z, Leung EK, Bayerlein R, Omidvari N, Cherry SR, Qi J, Badawi RD, Wang G. PMID: 38500666; PMCID: PMC10947795.
      View in: PubMed   Mentions:
    15. Neural KEM: A Kernel Method With Deep Coefficient Prior for PET Image Reconstruction. IEEE Trans Med Imaging. 2023 03; 42(3):785-796. Li S, Gong K, Badawi RD, Kim EJ, Qi J, Wang G. PMID: 36288234; PMCID: PMC10081957.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    16. AI-Based Automated Lipomatous Tumor Segmentation in MR Images: Ensemble Solution to Heterogeneous Data. J Digit Imaging. 2023 06; 36(3):1049-1059. Liu CC, Abdelhafez YG, Yap SP, Acquafredda F, Schirò S, Wong AL, Sarohia D, Bateni C, Darrow MA, Guindani M, Lee S, Zhang M, Moawad AW, Ng QK, Shere L, Elsayes KM, Maroldi R, Link TM, Nardo L, Qi J. PMID: 36854923; PMCID: PMC10287587.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    17. A conformal TOF-DOI Prism-PET prototype scanner for high-resolution quantitative neuroimaging. Med Phys. 2023 Jan 18. Zeng X, Wang Z, Tan W, Petersen E, Cao X, LaBella A, Boccia A, Franceschi D, de Leon M, Chiang GC, Qi J, Biegon A, Zhao W, Goldan AH. PMID: 36651630; PMCID: PMC11025680.
      View in: PubMed   Mentions: 9     Fields:    
    18. Positronium Lifetime Image Reconstruction for TOF PET. IEEE Trans Med Imaging. 2022 10; 41(10):2848-2855. Qi J, Huang B. PMID: 35584079; PMCID: PMC9829407.
      View in: PubMed   Mentions: 5     Fields:    
    19. Lutetium background radiation in total-body PET-A simulation study on opportunities and challenges in PET attenuation correction. Front Nucl Med. 2022; 2. Omidvari N, Cheng L, Leung EK, Abdelhafez YG, Badawi RD, Ma T, Qi J, Cherry SR. PMID: 36172601; PMCID: PMC9513593.
      View in: PubMed   Mentions: 3  
    20. Relating18F-FDG image signal-to-noise ratio to time-of-flight noise-equivalent count rate in total-body PET using the uEXPLORER scanner. Phys Med Biol. 2022 06 10; 67(12). Leung EK, Abdelhafez YG, Berg E, Xie Z, Zhang X, Bayerlein R, Spencer B, Li E, Omidvari N, Selfridge A, Cherry SR, Qi J, Badawi RD. PMID: 35609588; PMCID: PMC9275089.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    21. Deep Learning Based Joint PET Image Reconstruction and Motion Estimation. IEEE Trans Med Imaging. 2022 05; 41(5):1230-1241. Li T, Zhang M, Qi W, Asma E, Qi J. PMID: 34928789; PMCID: PMC9064915.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    22. Head and neck synthetic CT generated from ultra-low-dose cone-beam CT following Image Gently Protocol using deep neural network. Med Phys. 2022 May; 49(5):3263-3277. Yuan N, Rao S, Chen Q, Sensoy L, Qi J, Rong Y. PMID: 35229904.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    23. Direct Reconstruction of Linear Parametric Images From Dynamic PET Using Nonlocal Deep Image Prior. IEEE Trans Med Imaging. 2022 03; 41(3):680-689. Gong K, Catana C, Qi J, Li Q. PMID: 34652998; PMCID: PMC8956450.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    24. Total-Body PET Multiparametric Imaging of Cancer Using a Voxelwise Strategy of Compartmental Modeling. J Nucl Med. 2022 08; 63(8):1274-1281. Wang G, Nardo L, Parikh M, Abdelhafez YG, Li E, Spencer BA, Qi J, Jones T, Cherry SR, Badawi RD. PMID: 34795014; PMCID: PMC9364337.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
    25. Performance evaluation of dual-ended readout PET detectors based on BGO arrays with different reflector arrangements. Phys Med Biol. 2021 10 19; 66(21). Du J, Wang Q, Liu CC, Qi J, Cherry SR. PMID: 34607324; PMCID: PMC8571945.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    26. Anatomically aided PET image reconstruction using deep neural networks. Med Phys. 2021 Sep; 48(9):5244-5258. Xie Z, Li T, Zhang X, Qi W, Asma E, Qi J. PMID: 34129690; PMCID: PMC8510002.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    27. H2RSPET: a 0.5 mm resolution high-sensitivity small-animal PET scanner, a simulation study. Phys Med Biol. 2021 03 09; 66(6):065016. Lai Y, Wang Q, Zhou S, Xie Z, Qi J, Cherry SR, Jin M, Chi Y, Du J. PMID: 33571980; PMCID: PMC8353984.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    28. Clinical Enhancement in AI-Based Post-processed Fast-Scan Low-Dose CBCT for Head and Neck Adaptive Radiotherapy. Front Artif Intell. 2020; 3:614384. Chen W, Li Y, Yuan N, Qi J, Dyer BA, Sensoy L, Benedict SH, Shang L, Rao S, Rong Y. PMID: 33733226; PMCID: PMC7904899.
      View in: PubMed   Mentions: 5  
    29. 3D/4D Reconstruction and Quantitative Total Body Imaging. PET Clin. 2021 Jan; 16(1):41-54. Qi J, Matej S, Wang G, Zhang X. PMID: 33218603; PMCID: PMC8547199.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    30. Half2Half: deep neural network based CT image denoising without independent reference data. Phys Med Biol. 2020 11 05; 65(21):215020. Yuan N, Zhou J, Qi J. PMID: 32707565.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    31. Penalized maximum-likelihood reconstruction for improving limited-angle artifacts in a dedicated head and neck PET system. Phys Med Biol. 2020 08 21; 65(16):165016. Zhang H, Wang Y, Qi J, Abbaszadeh S. PMID: 32325441; PMCID: PMC7483847.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    32. Motion correction of respiratory-gated PET images using deep learning based image registration framework. Phys Med Biol. 2020 07 30; 65(15):155003. Li T, Zhang M, Qi W, Asma E, Qi J. PMID: 32244230; PMCID: PMC7446936.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    33. Generative adversarial network based regularized image reconstruction for PET. Phys Med Biol. 2020 06 23; 65(12):125016. Xie Z, Baikejiang R, Li T, Zhang X, Gong K, Zhang M, Qi W, Asma E, Qi J. PMID: 32357352; PMCID: PMC7413644.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    34. Maximum likelihood activity and attenuation estimation using both emission and transmission data with application to utilization of Lu-176 background radiation in TOF PET. Med Phys. 2020 Mar; 47(3):1067-1082. Cheng L, Ma T, Zhang X, Peng Q, Liu Y, Qi J. PMID: 31880818.
      View in: PubMed   Mentions: 7     Fields:    
    35. Convolutional neural network enhancement of fast-scan low-dose cone-beam CT images for head and neck radiotherapy. Phys Med Biol. 2020 01 27; 65(3):035003. Yuan N, Dyer B, Rao S, Chen Q, Benedict S, Shang L, Kang Y, Qi J, Rong Y. PMID: 31842014; PMCID: PMC8011532.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    36. Subsecond total-body imaging using ultrasensitive positron emission tomography. Proc Natl Acad Sci U S A. 2020 02 04; 117(5):2265-2267. Zhang X, Cherry SR, Xie Z, Shi H, Badawi RD, Qi J. PMID: 31964808; PMCID: PMC7007535.
      View in: PubMed   Mentions: 56     Fields:    Translation:Humans
    37. Design and evaluation of gapless curved scintillator arrays for simultaneous high-resolution and high-sensitivity brain PET. Phys Med Biol. 2019 11 26; 64(23):235004. Du J, Bai X, Liu CC, Qi J, Cherry SR. PMID: 31618708; PMCID: PMC7485540.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    38. Prototype Small-Animal PET-CT Imaging System for Image-guided Radiation Therapy. IEEE Access. 2019; 7:143207-143216. Mikhaylova E, Brooks J, Zuro D, Nouizi F, Kujawski M, Madabushi SS, Qi J, Zhang M, Chea J, Poku EK, Bowles N, Wong JYC, Shively JE, Yazaki PJ, Gulsen G, Cherry SR, Hui S. PMID: 32435548; PMCID: PMC7239319.
      View in: PubMed   Mentions: 5  
    39. Machine Learning in PET: from Photon Detection to Quantitative Image Reconstruction. Proc IEEE Inst Electr Electron Eng. 2020 Jan; 108(1):51-68. Gong K, Berg E, Cherry SR, Qi J. PMID: 38045770; PMCID: PMC10691821.
      View in: PubMed   Mentions: 33  
    40. Total-Body Dynamic Reconstruction and Parametric Imaging on the uEXPLORER. J Nucl Med. 2020 02; 61(2):285-291. Zhang X, Xie Z, Berg E, Judenhofer MS, Liu W, Xu T, Ding Y, Lv Y, Dong Y, Deng Z, Tang S, Shi H, Hu P, Chen S, Bao J, Li H, Zhou J, Wang G, Cherry SR, Badawi RD, Qi J. PMID: 31302637; PMCID: PMC8801950.
      View in: PubMed   Mentions: 72     Fields:    Translation:Humans
    41. Higher SNR PET image prediction using a deep learning model and MRI image. Phys Med Biol. 2019 05 23; 64(11):115004. Liu CC, Qi J. PMID: 30844784; PMCID: PMC7413624.
      View in: PubMed   Mentions: 28     Fields:    Translation:Humans
    42. PET Image Reconstruction Using Deep Image Prior. IEEE Trans Med Imaging. 2019 07; 38(7):1655-1665. Gong K, Catana C, Qi J, Li Q. PMID: 30575530; PMCID: PMC6584077.
      View in: PubMed   Mentions: 57     Fields:    Translation:Humans
    43. PET Image Denoising Using a Deep Neural Network Through Fine Tuning. IEEE Trans Radiat Plasma Med Sci. 2019 Mar; 3(2):153-161. Gong K, Guan J, Liu CC, Qi J. PMID: 32754674; PMCID: PMC7402614.
      View in: PubMed   Mentions: 69  
    44. Iterative PET Image Reconstruction Using Convolutional Neural Network Representation. IEEE Trans Med Imaging. 2019 03; 38(3):675-685. El Fakhri G. PMID: 30222554; PMCID: PMC6472985.
      View in: PubMed   Mentions: 57     Fields:    Translation:Humans
    45. Relative Patlak plot for dynamic PET parametric imaging without the need for early-time input function. Phys Med Biol. 2018 08 10; 63(16):165004. Zuo Y, Qi J, Wang G. PMID: 30020080; PMCID: PMC6133657.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    46. Theoretical study of the benefit of long axial field-of-view PET on region of interest quantification. Phys Med Biol. 2018 06 27; 63(13):135010. Zhang X, Badawi RD, Cherry SR, Qi J. PMID: 29799814; PMCID: PMC6097617.
      View in: PubMed   Mentions: 10     Fields:    
    47. Corrections to "Direct Patlak Reconstruction From Dynamic PET Data Using the Kernel Method With MRI Information Based on Structural Similarity". IEEE Trans Med Imaging. 2018 08; 37(8):1955. Gong K, Cheng-Liao J, Wang G, Chen KT, Catana C, Qi J. PMID: 29994470.
      View in: PubMed   Mentions:    Fields:    
    48. An Efficient Approach to Perform MR-assisted PET Data Optimization in Simultaneous PET/MR Neuroimaging Studies. J Nucl Med. 2018 Jun 22. Chen KT, Salcedo S, Gong K, Chonde DB, Izquierdo-Garcia D, Drzezga AE, Rosen B, Qi J, Dickerson BC, Catana C. PMID: 29934405; PMCID: PMC8833859.
      View in: PubMed   Mentions: 7     Fields:    
    49. Direct Patlak Reconstruction From Dynamic PET Data Using the Kernel Method With MRI Information Based on Structural Similarity. IEEE Trans Med Imaging. 2018 04; 37(4):955-965. Gong K, Cheng-Liao J, Wang G, Chen KT, Catana C, Qi J. PMID: 29610074; PMCID: PMC5933939.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    50. Lesion detection and quantification performance of the Tachyon-I time-of-flight PET scanner: phantom and human studies. Phys Med Biol. 2018 03 16; 63(6):065010. Zhang X, Peng Q, Zhou J, Huber JS, Moses WW, Qi J. PMID: 29461254; PMCID: PMC5933937.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    51. Functionally distinct and selectively phosphorylated GPCR subpopulations co-exist in a single cell. Nat Commun. 2018 03 13; 9(1):1050. Shen A, Nieves-Cintron M, Deng Y, Shi Q, Chowdhury D, Qi J, Hell JW, Navedo MF, Xiang YK. PMID: 29535304; PMCID: PMC5849717.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    52. Development and Evaluation of mini-EXPLORER: A Long Axial Field-of-View PET Scanner for Nonhuman Primate Imaging. J Nucl Med. 2018 06; 59(6):993-998. Berg E, Zhang X, Bec J, Judenhofer MS, Patel B, Peng Q, Kapusta M, Schmand M, Casey ME, Tarantal AF, Qi J, Badawi RD, Cherry SR. PMID: 29419483; PMCID: PMC6004556.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    53. Total-Body PET: Maximizing Sensitivity to Create New Opportunities for Clinical Research and Patient Care. J Nucl Med. 2018 01; 59(1):3-12. Cherry SR, Jones T, Karp JS, Qi J, Moses WW, Badawi RD. PMID: 28935835; PMCID: PMC5750522.
      View in: PubMed   Mentions: 243     Fields:    Translation:Humans
    54. Hybrid Pre-Log and Post-Log Image Reconstruction for Computed Tomography. IEEE Trans Med Imaging. 2017 12; 36(12):2457-2465. Wang G, Zhou J, Yu Z, Wang W, Qi J. PMID: 28920898; PMCID: PMC5783547.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    55. Open-field mouse brain PET: design optimisation and detector characterisation. Phys Med Biol. 2017 Jul 13; 62(15):6207-6225. Kyme AZ, Judenhofer MS, Gong K, Bec J, Selfridge A, Du J, Qi J, Cherry SR, Meikle SR. PMID: 28475491.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    56. Sinogram Blurring Matrix Estimation From Point Sources Measurements With Rank-One Approximation for Fully 3-D PET. IEEE Trans Med Imaging. 2017 10; 36(10):2179-2188. Gong K, Zhou J, Tohme M, Judenhofer M, Yang Y, Qi J. PMID: 28613163; PMCID: PMC5628122.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    57. Regularization parameter selection for penalized-likelihood list-mode image reconstruction in PET. Phys Med Biol. 2017 Jun 21; 62(12):5114-5130. Zhang M, Zhou J, Niu X, Asma E, Wang W, Qi J. PMID: 28402287; PMCID: PMC5783542.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    58. Quantitative image reconstruction for total-body PET imaging using the 2-meter long EXPLORER scanner. Phys Med Biol. 2017 03 21; 62(6):2465-2485. Zhang X, Zhou J, Cherry SR, Badawi RD, Qi J. PMID: 28240215; PMCID: PMC5524562.
      View in: PubMed   Mentions: 45     Fields:    Translation:Humans
    59. Reply to Comment: 'A novel method for fast and robust estimation of fluorescence decay dynamics using constrained least-square deconvolution with Laguerre expansion'. Phys Med Biol. 2017 02 21; 62(4):1637-1641. Ma D, Liu J, Qi J, Marcu L. PMID: 28145280; PMCID: PMC5340299.
      View in: PubMed   Mentions: 2     Fields:    
    60. Anatomically-aided PET reconstruction using the kernel method. Phys Med Biol. 2016 09 21; 61(18):6668-6683. Hutchcroft W, Wang G, Chen KT, Catana C, Qi J. PMID: 27541810; PMCID: PMC5095621.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
    61. Improving Depth, Energy and Timing Estimation in PET Detectors with Deconvolution and Maximum Likelihood Pulse Shape Discrimination. IEEE Trans Med Imaging. 2016 11; 35(11):2436-2446. Berg E, Roncali E, Hutchcroft W, Qi J, Cherry SR. PMID: 27295658; PMCID: PMC5119913.
      View in: PubMed   Mentions: 5     Fields:    
    62. Designing a compact high performance brain PET scanner-simulation study. Phys Med Biol. 2016 05 21; 61(10):3681-97. Gong K, Majewski S, Kinahan PE, Harrison RL, Elston BF, Manjeshwar R, Dolinsky S, Stolin AV, Brefczynski-Lewis JA, Qi J. PMID: 27081753; PMCID: PMC4863179.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    63. A Prototype High-Resolution Small-Animal PET Scanner Dedicated to Mouse Brain Imaging. J Nucl Med. 2016 07; 57(7):1130-5. Yang Y, Bec J, Zhou J, Zhang M, Judenhofer MS, Bai X, Di K, Wu Y, Rodriguez M, Dokhale P, Shah KS, Farrell R, Qi J, Cherry SR. PMID: 27013696; PMCID: PMC5497697.
      View in: PubMed   Mentions: 35     Fields:    Translation:Animals
    64. On the assessment of spatial resolution of PET systems with iterative image reconstruction. Phys Med Biol. 2016 Mar 07; 61(5):N193-202. Gong K, Cherry SR, Qi J. PMID: 26864088; PMCID: PMC4890626.
      View in: PubMed   Mentions: 28     Fields:    Translation:Humans
    65. Efficient system modeling for a small animal PET scanner with tapered DOI detectors. Phys Med Biol. 2016 Jan 21; 61(2):461-74. Zhang M, Zhou J, Yang Y, Rodríguez-Villafuerte M, Qi J. PMID: 26682623; PMCID: PMC4874520.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    66. Theoretical Analysis of Penalized Maximum-Likelihood Patlak Parametric Image Reconstruction in Dynamic PET for Lesion Detection. IEEE Trans Med Imaging. 2016 Apr; 35(4):947-56. Yang L, Wang G, Qi J. PMID: 26625407; PMCID: PMC4996625.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    67. Performance of the Tachyon Time-of-Flight PET Camera. IEEE Trans Nucl Sci. 2015 Feb; 62(1):111-119. Peng Q, Choong WS, Vu C, Huber JS, Janecek M, Wilson D, Huesman RH, Qi J, Zhou J, Moses WW. PMID: 26594057; PMCID: PMC4652946.
      View in: PubMed   Mentions: 5  
    68. Validation of the SimSET simulation package for modeling the Siemens Biograph mCT PET scanner. Phys Med Biol. 2015 Feb 07; 60(3):N35-45. Poon JK, Dahlbom ML, Casey ME, Qi J, Cherry SR, Badawi RD. PMID: 25586800.
      View in: PubMed   Mentions: 8     Fields:    
    69. Evaluation of penalty design in penalized maximum-likelihood image reconstruction for lesion detection. J Med Imaging (Bellingham). 2014 Oct; 1(3):035501. Yang L, Ferrero A, Hagge RJ, Badawi RD, Qi J. PMID: 26158072; PMCID: PMC4286231.
      View in: PubMed   Mentions: 3  
    70. Edge-preserving PET image reconstruction using trust optimization transfer. IEEE Trans Med Imaging. 2015 Apr; 34(4):930-9. Wang G, Qi J. PMID: 25438302; PMCID: PMC4385498.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    71. Fluorescence lifetime imaging and intravascular ultrasound: co-registration study using ex vivo human coronaries. IEEE Trans Med Imaging. 2015 Jan; 34(1):156-66. Gorpas D, Fatakdawala H, Bec J, Ma D, Yankelevich DR, Qi J, Marcu L. PMID: 25163056; PMCID: PMC4428614.
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    72. PET image reconstruction using kernel method. IEEE Trans Med Imaging. 2015 Jan; 34(1):61-71. Wang G, Qi J. PMID: 25095249; PMCID: PMC4280333.
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    73. Efficient fully 3D list-mode TOF PET image reconstruction using a factorized system matrix with an image domain resolution model. Phys Med Biol. 2014 Feb 07; 59(3):541-59. Zhou J, Qi J. PMID: 24434568; PMCID: PMC4182441.
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    74. Regularization design in penalized maximum-likelihood image reconstruction for lesion detection in 3D PET. Phys Med Biol. 2014 Jan 20; 59(2):403-19. Yang L, Zhou J, Ferrero A, Badawi RD, Qi J. PMID: 24351981; PMCID: PMC4254853.
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    75. Direct estimation of kinetic parametric images for dynamic PET. Theranostics. 2013 Nov 20; 3(10):802-15. Wang G, Qi J. PMID: 24396500; PMCID: PMC3879057.
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    76. Resolution modeling in PET imaging: theory, practice, benefits, and pitfalls. Med Phys. 2013 Jun; 40(6):064301. Rahmim A, Qi J, Sossi V. PMID: 23718620; PMCID: PMC3663852.
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    77. An optimization transfer algorithm for nonlinear parametric image reconstruction from dynamic PET data. IEEE Trans Med Imaging. 2012 Oct; 31(10):1977-88. Wang G, Qi J. PMID: 22893380; PMCID: PMC4086832.
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    78. Penalized likelihood PET image reconstruction using patch-based edge-preserving regularization. IEEE Trans Med Imaging. 2012 Dec; 31(12):2194-204. Wang G, Qi J. PMID: 22875244; PMCID: PMC4080915.
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    79. A novel method for fast and robust estimation of fluorescence decay dynamics using constrained least-squares deconvolution with Laguerre expansion. Phys Med Biol. 2012 Feb 21; 57(4):843-65. Liu J, Sun Y, Qi J, Marcu L. PMID: 22290334; PMCID: PMC3407553.
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    80. Fast and efficient fully 3D PET image reconstruction using sparse system matrix factorization with GPU acceleration. Phys Med Biol. 2011 Oct 21; 56(20):6739-57. Zhou J, Qi J. PMID: 21970864; PMCID: PMC4080908.
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    81. PET image reconstruction with anatomical edge guided level set prior. Phys Med Biol. 2011 Nov 07; 56(21):6899-918. Cheng-Liao J, Qi J. PMID: 21983558; PMCID: PMC3393853.
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    82. Experimental assessment of resolution improvement of a zoom-in PET. Phys Med Biol. 2011 Sep 07; 56(17):N165-74. Qi J, Yang Y, Zhou J, Wu Y, Cherry SR. PMID: 21828899.
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    83. Tapered LSO arrays for small animal PET. Phys Med Biol. 2011 Jan 07; 56(1):139-53. Yang Y, James SS, Wu Y, Du H, Qi J, Farrell R, Dokhale PA, Shah KS, Vaigneur K, Cherry SR. PMID: 21119228; PMCID: PMC3117425.
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    84. Detection performance analysis for time-of-flight PET. Phys Med Biol. 2010 Nov 21; 55(22):6931-50. Cao N, Huesman RH, Moses WW, Qi J. PMID: 21048292; PMCID: PMC3132876.
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    85. Segmentation of mouse dynamic PET images using a multiphase level set method. Phys Med Biol. 2010 Nov 07; 55(21):6549-69. Cheng-Liao J, Qi J. PMID: 20959689; PMCID: PMC3410969.
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    86. Iterative reconstruction of Fourier-rebinned PET data using sinogram blurring function estimated from point source scans. Med Phys. 2010 Oct; 37(10):5530-40. Tohme MS, Qi J. PMID: 21089788; PMCID: PMC2962665.
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    87. Adaptive imaging for lesion detection using a zoom-in PET system. IEEE Trans Med Imaging. 2011 Jan; 30(1):119-30. Zhou J, Qi J. PMID: 20699208; PMCID: PMC3014423.
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    88. Acceleration of the direct reconstruction of linear parametric images using nested algorithms. Phys Med Biol. 2010 Mar 07; 55(5):1505-17. Wang G, Qi J. PMID: 20157226; PMCID: PMC2952886.
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    89. A residual correction method for high-resolution PET reconstruction with application to on-the-fly Monte Carlo based model of positron range. Med Phys. 2010 Feb; 37(2):704-13. Fu L, Qi J. PMID: 20229880; PMCID: PMC2821421.
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    90. An imaging-driven model for liposomal stability and circulation. Mol Pharm. 2010 Feb 01; 7(1):12-21. Qin S, Seo JW, Zhang H, Qi J, Curry FR, Ferrara KW. PMID: 19621944; PMCID: PMC2867051.
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    91. Simulation study of spatial resolution and sensitivity for the tapered depth of interaction PET detectors for small animal imaging. Phys Med Biol. 2010 Jan 21; 55(2):N63-74. St James S, Yang Y, Bowen SL, Qi J, Cherry SR. PMID: 20023331; PMCID: PMC3136367.
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    92. Three-dimensional fluorescence optical tomography in small-animal imaging using simultaneous positron-emission-tomography priors. Opt Lett. 2009 Oct 01; 34(19):2933-5. Li C, Wang G, Qi J, Cherry SR. PMID: 19794772; PMCID: PMC2856619.
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    93. Initial characterization of a dedicated breast PET/CT scanner during human imaging. J Nucl Med. 2009 Sep; 50(9):1401-8. Bowen SL, Wu Y, Chaudhari AJ, Fu L, Packard NJ, Burkett GW, Yang K, Lindfors KK, Shelton DK, Hagge R, Borowsky AD, Martinez SR, Qi J, Boone JM, Cherry SR, Badawi RD. PMID: 19690029; PMCID: PMC2872060.
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    94. Theoretical analysis and simulation study of a high-resolution zoom-in PET system. Phys Med Biol. 2009 Sep 07; 54(17):5193-208. Zhou J, Qi J. PMID: 19671969.
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    95. DETECTION PERFORMANCE ANALYSIS FOR TIME-OF-FLIGHT PET. Proc IEEE Int Symp Biomed Imaging. 2009 Aug 07; June 28 2009-July 1 2009:402-405. Cao N, Huesman RH, Moses WW, Qi J. PMID: 20936051; PMCID: PMC2951602.
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    96. DIRECT RECONSTRUCTION OF DYNAMIC PET PARAMETRIC IMAGES USING SPARSE SPECTRAL REPRESENTATION. Proc IEEE Int Symp Biomed Imaging. 2009 Aug 07; 2009:867-870. Wang G, Qi J. PMID: 21278825; PMCID: PMC3028271.
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    97. PET characteristics of a dedicated breast PET/CT scanner prototype. Phys Med Biol. 2009 Jul 07; 54(13):4273-87. Wu Y, Bowen SL, Yang K, Packard N, Fu L, Burkett G, Qi J, Boone JM, Cherry SR, Badawi RD. PMID: 19531852; PMCID: PMC2738997.
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    98. PET Performance Evaluation of an MR-Compatible PET Insert. IEEE Trans Nucl Sci. 2009 Jun 16; 56(3):574-580. Wu Y, Catana C, Farrell R, Dokhale PA, Shah KS, Qi J, Cherry SR. PMID: 21072320; PMCID: PMC2976049.
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    99. Iterative image reconstruction for positron emission tomography based on a detector response function estimated from point source measurements. Phys Med Biol. 2009 Jun 21; 54(12):3709-25. Tohme MS, Qi J. PMID: 19478379; PMCID: PMC2901798.
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    100. Generalized algorithms for direct reconstruction of parametric images from dynamic PET data. IEEE Trans Med Imaging. 2009 Nov; 28(11):1717-26. Wang G, Qi J. PMID: 19447699; PMCID: PMC2901800.
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    101. Bayesian image reconstruction for improving detection performance of muon tomography. IEEE Trans Image Process. 2009 May; 18(5):1080-9. Wang G, Schultz LJ, Qi J. PMID: 19342340.
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    102. Analysis of penalized likelihood image reconstruction for dynamic PET quantification. IEEE Trans Med Imaging. 2009 Apr; 28(4):608-20. Wang G, Qi J. PMID: 19211345; PMCID: PMC2792209.
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    103. Quantitative Accuracy of Penalized-Likelihood Reconstruction for ROI Activity Estimation. IEEE Trans Nucl Sci. 2009 Feb 01; 56(1):167. Fu L, Stickel JR, Badawi RD, Qi J. PMID: 20126521; PMCID: PMC2808035.
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    104. High-resolution adaptive PET imaging. Inf Process Med Imaging. 2009; 21:26-37. Zhou J, Qi J. PMID: 19694250.
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    105. Depth of interaction calibration for PET detectors with dual-ended readout by PSAPDs. Phys Med Biol. 2009 Jan 21; 54(2):433-45. Yang Y, Qi J, Wu Y, St James S, Farrell R, Dokhale PA, Shah KS, Cherry SR. PMID: 19098356; PMCID: PMC2631388.
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    106. A prototype PET scanner with DOI-encoding detectors. J Nucl Med. 2008 Jul; 49(7):1132-40. Yang Y, Wu Y, Qi J, St James S, Du H, Dokhale PA, Shah KS, Farrell R, Cherry SR. PMID: 18552140; PMCID: PMC2662710.
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    107. Simultaneous in vivo positron emission tomography and magnetic resonance imaging. Proc Natl Acad Sci U S A. 2008 Mar 11; 105(10):3705-10. Catana C, Procissi D, Wu Y, Judenhofer MS, Qi J, Pichler BJ, Jacobs RE, Cherry SR. PMID: 18319342; PMCID: PMC2268792.
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    108. Dynamic imaging of arginine-rich heart-targeted vehicles in a mouse model. Biomaterials. 2008 Apr; 29(12):1976-88. Zhang H, Kusunose J, Kheirolomoom A, Seo JW, Qi J, Watson KD, Lindfors HA, Ruoslahti E, Sutcliffe JL, Ferrara KW. PMID: 18255141; PMCID: PMC2475513.
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    109. Maximum a posteriori reconstruction of the Patlak parametric image from sinograms in dynamic PET. Phys Med Biol. 2008 Feb 07; 53(3):593-604. Wang G, Fu L, Qi J. PMID: 18199904.
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    110. Fabrication and characterization of a 0.5-mm lutetium oxyorthosilicate detector array for high-resolution PET applications. J Nucl Med. 2007 Jan; 48(1):115-21. Stickel JR, Qi J, Cherry SR. PMID: 17204707.
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    111. Simultaneous acquisition of multislice PET and MR images: initial results with a MR-compatible PET scanner. J Nucl Med. 2006 Dec; 47(12):1968-76. Catana C, Wu Y, Judenhofer MS, Qi J, Pichler BJ, Cherry SR. PMID: 17138739.
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    112. Penalized maximum-likelihood image reconstruction for lesion detection. Phys Med Biol. 2006 Aug 21; 51(16):4017-29. Qi J, Huesman RH. PMID: 16885621.
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    113. Iterative reconstruction techniques in emission computed tomography. Phys Med Biol. 2006 Aug 07; 51(15):R541-78. Qi J, Leahy RM. PMID: 16861768.
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    114. Comparison of Lesion Detection and Quantification in MAP Reconstruction with Gaussian and Non-Gaussian Priors. Int J Biomed Imaging. 2006; 2006:87567. Qi J. PMID: 23165056; PMCID: PMC2324047.
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    115. Theoretical study of penalized-likelihood image reconstruction for region of interest quantification. IEEE Trans Med Imaging. 2006 May; 25(5):640-8. Qi J, Huesman RH. PMID: 16689267.
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    116. Rapamycin inhibits growth of premalignant and malignant mammary lesions in a mouse model of ductal carcinoma in situ. Clin Cancer Res. 2006 Apr 15; 12(8):2613-21. Namba R, Young LJ, Abbey CK, Kim L, Damonte P, Borowsky AD, Qi J, Tepper CG, MacLeod CL, Cardiff RD, Gregg JP. PMID: 16638874.
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    117. Maximum-likelihood estimation of detector response for PET image reconstruction. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:2530-3. Qi J. PMID: 17946519.
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    118. A retrospective on the LBNL PEM project. Phys Med. 2006; 21 Suppl 1:60-3. Huber JS, Moses WW, Wang GC, Derenzo SE, Huesman RH, Qi J, Virador P, Choong WS, Mandelli E, Beuville E, Pedrali-Noy M, Krieger B, Meddeler GJ. PMID: 17645996.
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    119. Effect of errors in the system matrix on maximum a posteriori image reconstruction. Phys Med Biol. 2005 Jul 21; 50(14):3297-312. Qi J, Huesman RH. PMID: 16177510; PMCID: PMC1382175.
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    120. An approximate short scan helical FDK cone beam algorithm based on nutating curved surfaces satisfying the Tuy's condition. Med Phys. 2005 Jun; 32(6):1529-36. Hu J, Tam K, Qi J. PMID: 16013710.
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    121. Propagation of errors from the sensitivity image in list mode reconstruction. IEEE Trans Med Imaging. 2004 Sep; 23(9):1094-9. Qi J, Huesman RH. PMID: 15377118.
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    122. Accurate estimation of the Fisher information matrix for the PET image reconstruction problem. IEEE Trans Med Imaging. 2004 Sep; 23(9):1057-64. Li Q, Asma E, Qi J, Bading JR, Leahy RM. PMID: 15377114.
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    123. Analysis of lesion detectability in Bayesian emission reconstruction with nonstationary object variability. IEEE Trans Med Imaging. 2004 Mar; 23(3):321-9. Qi J. PMID: 15027525.
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    124. Optimization of a PET scanner design for prostate lesion detection. Conf Proc IEEE Eng Med Biol Soc. 2004; 2004:1357-60. Qi J. PMID: 17271944.
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    125. A unified noise analysis for iterative image estimation. Phys Med Biol. 2003 Nov 07; 48(21):3505-19. Qi J. PMID: 14653559.
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    126. Theoretical evaluation of the detectability of random lesions in Bayesian emission reconstruction. Inf Process Med Imaging. 2003 Jul; 18:354-65. Qi J. PMID: 15344471.
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    127. Scatter correction for positron emission mammography. Phys Med Biol. 2002 Aug 07; 47(15):2759-71. Qi J, Huesman RH. PMID: 12200937.
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    128. Spatiotemporal reconstruction of list-mode PET data. IEEE Trans Med Imaging. 2002 Apr; 21(4):396-404. Nichols TE, Qi J, Asma E, Leahy RM. PMID: 12022627.
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