Sharif Aly

Title(s)Professor, School of Veterinary Medicine
SchoolSchool of Veterinary Medicine
ORCID ORCID Icon0000-0003-0330-5013 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Impact of zinc supplementation on phenotypic antimicrobial resistance of fecal commensal bacteria from pre-weaned dairy calves. Sci Rep. 2024 02 23; 14(1):4448. Lee KY, Atwill ER, Li X, Feldmann HR, Williams DR, Weimer BC, Aly SS. PMID: 38396015.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    2. Effects of simplified group housing on behavior, growth performance and health of preweaned dairy calves on a California dairy. J Dairy Sci. 2024 Jan 19. Abdelfattah EM, Aly SS, Lehenbauer TW, Karle BM. PMID: 38246538.
      View in: PubMed   Mentions:    Fields:    
    3. Antimicrobial Susceptibility in Respiratory Pathogens and Farm and Animal Variables in Weaned California Dairy Heifers: Logistic Regression and Bayesian Network Analyses. Antibiotics (Basel). 2024 Jan 04; 13(1). Morgan Bustamante BL, Chigerwe M, Martínez-López B, Aly SS, McArthur G, ElAshmawy WR, Fritz H, Williams DR, Wenz J, Depenbrock S. PMID: 38247609; PMCID: PMC10812578.
      View in: PubMed   Mentions:
    4. Unveiling the microbiome during post-partum uterine infection: a deep shotgun sequencing approach to characterize the dairy cow uterine microbiome. Anim Microbiome. 2023 Nov 20; 5(1):59. Basbas C, Garzon A, Schlesener C, van Heule M, Profeta R, Weimer BC, Silva-Del-Rio N, Byrne BA, Karle B, Aly SS, Lima FS, Pereira RV. PMID: 37986012; PMCID: PMC10662892.
      View in: PubMed   Mentions:
    5. Management Practices of Bovine Mastitis and Milk Quality on Egyptian Dairies. Vet Sci. 2023 Oct 21; 10(10). Farag HS, Aly SS, Fahim KM, Fayed AA, Abdelfattah EM, El-Sayed SM, Hegazy YM, ElAshmawy WR. PMID: 37888581; PMCID: PMC10611314.
      View in: PubMed   Mentions:
    6. Agreement among deep nasopharyngeal sampling culture results for 3 different swab types in preweaning dairy calves. JDS Commun. 2024 Jan; 5(1):57-60. Hoyos-Jaramillo A, Garzon A, Fritz HM, Byrne BA, Miramontes CC, Lehenbauer TW, Aly S, Pereira RV. PMID: 38223385; PMCID: PMC10785258.
      View in: PubMed   Mentions:
    7. Effect of dry cow therapy on antimicrobial resistance of mastitis pathogens post-calving. Front Vet Sci. 2023; 10:1132810. Okello E, ElAshmawy WR, Williams DR, Lehenbauer TW, Aly SS. PMID: 37546337; PMCID: PMC10399697.
      View in: PubMed   Mentions: 1  
    8. Effect of Group Housing of Preweaned Dairy Calves: Health and Fecal Commensal Antimicrobial Resistance Outcomes. Antibiotics (Basel). 2023 Jun 06; 12(6). Breen MJ, Williams DR, Abdelfattah EM, Karle BM, Byrne BA, Lehenbauer TW, Aly SS. PMID: 37370338; PMCID: PMC10295116.
      View in: PubMed   Mentions: 1  
    9. In vitro evaluation of the effect of transport medium, temperature, and time on the recovery of Mannheimia haemolytica and Pasteurella multocida. JDS Commun. 2023 May; 4(3):214-218. Garzon A, Hoyos-Jaramillo A, Hustad S, Byrne BA, Fritz HM, Lehenbauer TW, Aly S, Pereira R. PMID: 37360122; PMCID: PMC10285246.
      View in: PubMed   Mentions: 1  
    10. Decision tree risk analysis for FMD outbreak prevention in Egyptian feedlots. Prev Vet Med. 2022 Dec 20; 211:105820. ElAshmawy WR, Aly SS, Farouk MM. PMID: 36584568.
      View in: PubMed   Mentions: 1     Fields:    
    11. Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Milk Production and Somatic Cell Count Outcomes. Vet Sci. 2022 Oct 11; 9(10). ElAshmawy WR, Okello E, Williams DR, Anderson RJ, Karle B, Lehenbauer TW, Aly SS. PMID: 36288172; PMCID: PMC9608262.
      View in: PubMed   Mentions: 3  
    12. Evaluation of antimicrobial resistance and risk factors for recovery of intrauterine Escherichia coli from cows with metritis on California commercial dairy farms. Sci Rep. 2022 08 17; 12(1):13937. Basbas C, Garzon A, Silva-Del-Rio N, Byrne BA, Karle B, Aly SS, Champagne JD, Williams DR, Lima FS, Machado VS, Pereira RV. PMID: 35978077; PMCID: PMC9386028.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    13. Effect of Intramammary Dry Cow Antimicrobial Treatment on Fresh Cow's Milk Microbiota in California Commercial Dairies. Antibiotics (Basel). 2022 Jul 18; 11(7). Basbas C, Aly S, Okello E, Karle BM, Lehenbauer T, Williams D, Ganda E, Wiedmann M, Pereira RV. PMID: 35884217; PMCID: PMC9312063.
      View in: PubMed   Mentions: 1  
    14. Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Clinical Mastitis and Culling Outcomes. Antibiotics (Basel). 2022 Jul 15; 11(7). Aly SS, Okello E, ElAshmawy WR, Williams DR, Anderson RJ, Rossitto P, Tonooka K, Glenn K, Karle B, Lehenbauer TW. PMID: 35884208; PMCID: PMC9311672.
      View in: PubMed   Mentions: 4  
    15. Dynamic changes in fecal bacterial microbiota of dairy cattle across the production line. BMC Microbiol. 2022 05 14; 22(1):132. Zhao L, Li X, Atwill ER, Aly SS, Williams DR, Su Z. PMID: 35568809; PMCID: PMC9107139.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    16. Bayesian estimation of sensitivity and specificity of a rapid mastitis test kit, bacterial culture, and PCR for detection of Staphylococcus aureus, Streptococcus species, and coliforms in bovine milk samples. J Dairy Sci. 2022 Jul; 105(7):6240-6250. Chamchoy T, Okello E, Williams DR, Tonooka K, Glenn K, Maehana K, Gardner IA, Aly SS. PMID: 35525615.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    17. Factors Associated with Antimicrobial Stewardship Practices on California Dairies: One Year Post Senate Bill 27. Antibiotics (Basel). 2022 Jan 27; 11(2). Abdelfattah EM, Ekong PS, Okello E, Williams DR, Karle BM, Lehenbauer TW, Aly SS. PMID: 35203769; PMCID: PMC8868138.
      View in: PubMed   Mentions:
    18. Quantification of antibiotic resistance genes and mobile genetic in dairy manure. PeerJ. 2021; 9:e12408. Wang Y, Pandey P, Chiu C, Jeannotte R, Kuppu S, Zhang R, Pereira R, Weimer BC, Nitin N, Aly SS. PMID: 35036113; PMCID: PMC8710253.
      View in: PubMed   Mentions: 1     Fields:    
    19. In-vitro antibiotic resistance phenotypes of respiratory and enteric bacterial isolates from weaned dairy heifers in California. PLoS One. 2021; 16(11):e0260292. Depenbrock S, Aly S, Wenz J, Williams D, ElAshmawy W, Clothier K, Fritz H, McArthur G, Heller M, Chigerwe M. PMID: 34818352; PMCID: PMC8612539.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    20. Estimating the Rates of Acquisition and loss of Resistance of Enterobacteriaceae to Antimicrobial Drugs in Pre-Weaned Dairy Calves. Microorganisms. 2021 Oct 06; 9(10). Cella E, Okello E, Rossitto PV, Cenci-Goga BT, Grispoldi L, Williams DR, Sheedy DB, Pereira R, Karle BM, Lehenbauer TW, Aly SS. PMID: 34683424; PMCID: PMC8539406.
      View in: PubMed   Mentions: 2  
    21. Etiology and risk factors for bovine respiratory disease in pre-weaned calves on California dairies and calf ranches. Prev Vet Med. 2021 Dec; 197:105506. Aly SS, Love WJ, Blanchard PC, Crossley B, Van Eenennaam AL, Lehenbauer TW. PMID: 34740025.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    22. Antibiotic Resistance Genes and Associated Phenotypes in Escherichia coli and Enterococcus from Cattle at Different Production Stages on a Dairy Farm in Central California. Antibiotics (Basel). 2021 Aug 26; 10(9). Jeamsripong S, Li X, Aly SS, Su Z, Pereira RV, Atwill ER. PMID: 34572624; PMCID: PMC8471271.
      View in: PubMed   Mentions: 6  
    23. Degradation of antibiotic resistance genes and mobile gene elements in dairy manure anerobic digestion. PLoS One. 2021; 16(8):e0254836. Wang Y, Pandey PK, Kuppu S, Pereira R, Aly S, Zhang R. PMID: 34432793; PMCID: PMC8386849.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    24. Development of a multiplex qPCR assay for the simultaneous detection of Mycoplasma bovis, Mycoplasma species, and Acholeplasma laidlawii in milk. PeerJ. 2021; 9:e11881. Chauhan K, Aly SS, Lehenbauer TW, Tonooka KH, Glenn K, Rossitto P, Marco ML. PMID: 34447623; PMCID: PMC8364749.
      View in: PubMed   Mentions: 2     Fields:    
    25. Stable fly activity is associated with dairy management practices and seasonal weather conditions. PLoS One. 2021; 16(7):e0253946. ElAshmawy WR, Abdelfattah EM, Williams DR, Gerry AC, Rossow HA, Lehenbauer TW, Aly SS. PMID: 34320006; PMCID: PMC8318229.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsPHPublic Health
    26. Dairy management practices associated with multi-drug resistant fecal commensals and Salmonella in cull cows: a machine learning approach. PeerJ. 2021; 9:e11732. Pandit PS, Williams DR, Rossitto P, Adaska JM, Pereira R, Lehenbauer TW, Byrne BA, Li X, Atwill ER, Aly SS. PMID: 34316397; PMCID: PMC8288115.
      View in: PubMed   Mentions:    Fields:    
    27. 2019 Survey of Antimicrobial Drug Use and Stewardship Practices in Adult Cows on California Dairies: Post Senate Bill 27. Microorganisms. 2021 Jul 14; 9(7). Abdelfattah EM, Ekong PS, Okello E, Williams DR, Karle BM, Rowe JD, Marshall ES, Lehenbauer TW, Aly SS. PMID: 34361940; PMCID: PMC8304910.
      View in: PubMed   Mentions: 6  
    28. 2018 Survey of antimicrobial drug use and stewardship practices in adult cows on California dairies: post-Senate Bill 27. PeerJ. 2021; 9:e11515. Ekong PS, Abdelfattah EM, Okello E, Williams DR, Lehenbauer TW, Karle BM, Rowe JD, Marshall ES, Aly SS. PMID: 34306824; PMCID: PMC8284310.
      View in: PubMed   Mentions: 5     Fields:    
    29. 2018 Survey of factors associated with antimicrobial drug use and stewardship practices in adult cows on conventional California dairies: immediate post-Senate Bill 27 impact. PeerJ. 2021; 9:e11596. Ekong PS, Abdelfattah EM, Okello E, Williams DR, Lehenbauer TW, Karle BM, Rowe JD, Aly SS. PMID: 34306825; PMCID: PMC8284309.
      View in: PubMed   Mentions: 4     Fields:    
    30. Survey on Antimicrobial Drug Use Practices in California Preweaned Dairy Calves. Front Vet Sci. 2021; 8:636670. Okello E, Williams DR, ElAshmawy WR, Adams J, Pereira RV, Lehenbauer TW, Aly SS. PMID: 33969034; PMCID: PMC8101284.
      View in: PubMed   Mentions: 9  
    31. Epidemiology of antimicrobial resistance (AMR) on California dairies: descriptive and cluster analyses of AMR phenotype of fecal commensal bacteria isolated from adult cows. PeerJ. 2021; 9:e11108. Abdelfattah EM, Ekong PS, Okello E, Chamchoy T, Karle BM, Black RA, Sheedy D, ElAshmawy WR, Williams DR, Califano D, Tovar LFD, Ongom J, Lehenbauer TW, Byrne BA, Aly SS. PMID: 33976962; PMCID: PMC8063881.
      View in: PubMed   Mentions: 8     Fields:    
    32. Effect of Antimicrobial Treatment on the Dynamics of Ceftiofur Resistance in Enterobacteriaceae from Adult California Dairy Cows. Microorganisms. 2021 Apr 14; 9(4). Sheedy DB, Okello E, Williams DR, Precht K, Cella E, Lehenbauer TW, Aly SS. PMID: 33919743; PMCID: PMC8070714.
      View in: PubMed   Mentions: 3  
    33. Components of a risk assessment tool for prevention and control of bovine respiratory disease in preweaned dairy calves. Anim Health Res Rev. 2020 12; 21(2):153-159. Aly SS, Karle BM, Williams DR, Maier GU, Dubrovsky S. PMID: 33323149.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    34. Effect of continued metabolic acidification into the first 3 days of lactation on blood calcium status in postpartum dairy cattle: A randomized controlled trial. J Dairy Sci. 2020 Dec; 103(12):11762-11768. Maier GU, McNabb B, Pereira R, Bang H, Aly SS, Rossow HA. PMID: 33041044; PMCID: PMC7773151.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    35. Correction: Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies. PLoS One. 2020; 15(7):e0235775. El Ashmawy WR, Williams DR, Gerry AC, Champagne JD, Lehenbauer TW, Aly SS. PMID: 32609764; PMCID: PMC7329101.
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    36. Characterization and Growth under Different Storage Temperatures of Ropy Slime-Producing Leuconostoc mesenteroides Isolated from Cooked Meat Products. J Food Prot. 2020 Jun 01; 83(6):1043-1049. Cenci-Goga BT, Sechi P, Iulietto MF, Amirjalali S, Barbera S, Karama M, Aly SS, Grispoldi L. PMID: 31930931.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    37. Evaluation of Heat and pH Treatments on Degradation of Ceftiofur in Whole Milk. Front Vet Sci. 2020; 7:288. Garzon A, Pandey P, Tell L, Aly SS, Poppenga R, Pereira R. PMID: 32528987; PMCID: PMC7256783.
      View in: PubMed   Mentions: 2  
    38. Bayesian estimation of diagnostic accuracy of fecal culture and PCR-based tests for the detection of Salmonella enterica in California cull dairy cattle. PeerJ. 2020; 8:e8310. Adaska JM, Ekong PS, Clothier KA, Williams DR, Rossitto PV, Lehenbauer TW, Atwill ER, Li X, Aly SS. PMID: 31988800; PMCID: PMC6969550.
      View in: PubMed   Mentions: 4     Fields:    
    39. Effectiveness of control and preventive measures influenced by pathogen trait evolution: Example of Escherichia coli O157:H7. Journal of Computational and Applied Mathematics. 2019 Dec 1; 362(Ecol. Lett. 15 2012):366-382. Bani-Yaghoub BM, Wang WX, Pithua PP, Aly AS. .
      View in: Publisher Site   Mentions:
    40. Environmental sampling to assess the bioburden of Mycobacterium avium subspecies paratuberculosis in drylot pens on California dairies. PeerJ. 2019; 7:e8081. Chamchoy T, Williams DR, Adaska JM, Anderson RJ, Aly SS. PMID: 31763073; PMCID: PMC6873878.
      View in: PubMed   Mentions: 2     Fields:    
    41. Evaluation of four commercial tests for detecting ceftiofur in waste milk bulk tank samples. PLoS One. 2019; 14(11):e0224884. Belmar M, Aly S, Karle BM, Pereira RV. PMID: 31714908; PMCID: PMC6850555.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsPHPublic Health
    42. Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies. PLoS One. 2019; 14(11):e0224987. El Ashmawy WR, Williams DR, Gerry AC, Champagne JD, Lehenbauer TW, Aly SS. PMID: 31697765; PMCID: PMC6837549.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    43. Effectiveness of zinc supplementation on diarrhea and average daily gain in pre-weaned dairy calves: A double-blind, block-randomized, placebo-controlled clinical trial. PLoS One. 2019; 14(7):e0219321. Feldmann HR, Williams DR, Champagne JD, Lehenbauer TW, Aly SS. PMID: 31291305; PMCID: PMC6619766.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    44. Development of a clinical scoring system for bovine respiratory disease in weaned dairy calves. J Dairy Sci. 2019 Aug; 102(8):7329-7344. Maier GU, Rowe JD, Lehenbauer TW, Karle BM, Williams DR, Champagne JD, Aly SS. PMID: 31202651.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    45. Management factors associated with bovine respiratory disease in preweaned calves on California dairies: The BRD 100 study. J Dairy Sci. 2019 Aug; 102(8):7288-7305. Maier GU, Love WJ, Karle BM, Dubrovsky SA, Williams DR, Champagne JD, Anderson RJ, Rowe JD, Lehenbauer TW, Van Eenennaam AL, Aly SS. PMID: 31202656; PMCID: PMC7094750.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    46. Bovine respiratory disease (BRD) cause-specific and overall mortality in preweaned calves on California dairies: The BRD 10K study. J Dairy Sci. 2019 Aug; 102(8):7320-7328. Dubrovsky SA, Van Eenennaam AL, Karle BM, Rossitto PV, Lehenbauer TW, Aly SS. PMID: 31202642.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    47. Epidemiology of bovine respiratory disease (BRD) in preweaned calves on California dairies: The BRD 10K study. J Dairy Sci. 2019 Aug; 102(8):7306-7319. Dubrovsky SA, Van Eenennaam AL, Karle BM, Rossitto PV, Lehenbauer TW, Aly SS. PMID: 31202655.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    48. Molecular epidemiology of coagulase-negative Staphylococcus species isolated at different lactation stages from dairy cattle in the United States. PeerJ. 2019; 7:e6749. Jenkins SN, Okello E, Rossitto PV, Lehenbauer TW, Champagne J, Penedo MCT, Arruda AG, Godden S, Rapnicki P, Gorden PJ, Timms LL, Aly SS. PMID: 31119068; PMCID: PMC6507897.
      View in: PubMed   Mentions: 19     Fields:    
    49. Association between herd management practices and antimicrobial resistance in Salmonella spp. from cull dairy cattle in Central California. PeerJ. 2019; 7:e6546. Pereira R, Williams DR, Rossitto P, Adaska J, Okello E, Champagne J, Lehenbauer TW, Li X, Chase J, Nguyen T, Pires AFA, Atwill ER, Aly SS. PMID: 30923650; PMCID: PMC6431540.
      View in: PubMed   Mentions: 6     Fields:    
    50. Development and comparison of loop-mediated isothermal amplification and quantitative polymerase chain reaction assays for the detection of Mycoplasma bovis in milk. J Dairy Sci. 2019 Mar; 102(3):1985-1996. Appelt S, Aly SS, Tonooka K, Glenn K, Xue Z, Lehenbauer TW, Marco ML. PMID: 30612794.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    51. Regional management practices and prevalence of bovine respiratory disease in California's preweaned dairy calves. J Dairy Sci. 2019 Aug; 102(8):7583-7596. Karle BM, Maier GU, Love WJ, Dubrovsky SA, Williams DR, Anderson RJ, Van Eenennaam AL, Lehenbauer TW, Aly SS. PMID: 30527977.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    52. Association of plasma haptoglobin concentration and other biomarkers with bovine respiratory disease status in pre-weaned dairy calves. J Vet Diagn Invest. 2019 Jan; 31(1):40-46. Moisá SJ, Aly SS, Lehenbauer TW, Love WJ, Rossitto PV, Van Eenennaam AL, Trombetta SC, Bortoluzzi EM, Hulbert LE. PMID: 30328386; PMCID: PMC6505765.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    53. A nested compartmental model to assess the efficacy of paratuberculosis control measures on U.S. dairy farms. PLoS One. 2018; 13(10):e0203190. Konboon M, Bani-Yaghoub M, Pithua PO, Rhee N, Aly SS. PMID: 30278041; PMCID: PMC6168138.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    54. Effect of the environment on the risk of respiratory disease in preweaning dairy calves during summer months. J Dairy Sci. 2018 Nov; 101(11):10230-10247. Louie AP, Rowe JD, Love WJ, Lehenbauer TW, Aly SS. PMID: 30197140.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    55. Multidrug residues and antimicrobial resistance patterns in waste milk from dairy farms in Central California. J Dairy Sci. 2018 Sep; 101(9):8110-8122. Tempini PN, Aly SS, Karle BM, Pereira RV. PMID: 30126599.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    56. Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease. G3 (Bethesda). 2017 09 07; 7(9):3059-3071. Owen JR, Noyes N, Young AE, Prince DJ, Blanchard PC, Lehenbauer TW, Aly SS, Davis JH, O'Rourke SM, Abdo Z, Belk K, Miller MR, Morley P, Van Eenennaam AL. PMID: 28739600; PMCID: PMC5592931.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    57. Agreement Among 4 Sampling Methods to Identify Respiratory Pathogens in Dairy Calves with Acute Bovine Respiratory Disease. J Vet Intern Med. 2017 May; 31(3):954-959. Doyle D, Credille B, Lehenbauer TW, Berghaus R, Aly SS, Champagne J, Blanchard P, Crossley B, Berghaus L, Cochran S, Woolums A. PMID: 28295570; PMCID: PMC5434980.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    58. Cecal infarction in neonatal calves. J Vet Diagn Invest. 2017 Mar; 29(2):242-244. Adaska JM, Moeller RB, Blanchard PC, Aly SS. PMID: 28114867.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    59. Epidemiology of Salmonella sp. in California cull dairy cattle: prevalence of fecal shedding and diagnostic accuracy of pooled enriched broth culture of fecal samples. PeerJ. 2016; 4:e2386. Abu Aboud OA, Adaska JM, Williams DR, Rossitto PV, Champagne JD, Lehenbauer TW, Atwill R, Li X, Aly SS. PMID: 27635350; PMCID: PMC5012270.
      View in: PubMed   Mentions: 8     Fields:    
    60. Investigation of Anaplasma marginale Seroprevalence in a Traditionally Managed Large California Beef Herd. Vet Med Int. 2016; 2016:6186078. Tucker TR, Aly SS, Maas J, Davy JS, Foley JE. PMID: 27656312; PMCID: PMC5021891.
      View in: PubMed   Mentions: 2  
    61. Prevalence and Level of Enterohemorrhagic Escherichia coli in Culled Dairy Cows at Harvest. J Food Prot. 2016 Mar; 79(3):421-31. Stromberg ZR, Lewis GL, Aly SS, Lehenbauer TW, Bosilevac JM, Cernicchiaro N, Moxley RA. PMID: 26939652.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    62. Sensitivity and specificity of on-farm scoring systems and nasal culture to detect bovine respiratory disease complex in preweaned dairy calves. J Vet Diagn Invest. 2016 Mar; 28(2):119-28. Love WJ, Lehenbauer TW, Van Eenennaam AL, Drake CM, Kass PH, Farver TB, Aly SS. PMID: 26796957.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    63. Survey of management practices related to bovine respiratory disease in preweaned calves on California dairies. J Dairy Sci. 2016 Feb; 99(2):1483-1494. Love WJ, Lehenbauer TW, Karle BM, Hulbert LE, Anderson RJ, Van Eenennaam AL, Farver TB, Aly SS. PMID: 26709177.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    64. Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex. PLoS One. 2015; 10(11):e0142479. Gershwin LJ, Van Eenennaam AL, Anderson ML, McEligot HA, Shao MX, Toaff-Rosenstein R, Taylor JF, Neibergs HL, Womack J, Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team. PMID: 26571015; PMCID: PMC4646450.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    65. Determination of neonatal serum immunoglobulin G concentrations associated with mortality during the first 4 months of life in dairy heifer calves. J Dairy Res. 2015 Nov; 82(4):400-6. Chigerwe M, Hagey JV, Aly SS. PMID: 26383079.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    66. Off-site rearing of heifers reduces the risk of Mycobacterium avium ssp. paratuberculosis ELISA seroconversion and fecal shedding in a California dairy herd. J Dairy Sci. 2015 Mar; 98(3):1805-14. Aly SS, Gardner IA, Adaska JM, Anderson RJ. PMID: 25597977.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    67. Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves. BMC Genomics. 2014 Dec 22; 15:1164. Neibergs HL, Seabury CM, Wojtowicz AJ, Wang Z, Scraggs E, Kiser JN, Neupane M, Womack JE, Van Eenennaam A, Hagevoort GR, Lehenbauer TW, Aly S, Davis J, Taylor JF, Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team. PMID: 25534905; PMCID: PMC4445561.
      View in: PubMed   Mentions: 53     Fields:    Translation:Animals
    68. Agreement between bovine respiratory disease scoring systems for pre-weaned dairy calves. Anim Health Res Rev. 2014 Dec; 15(2):148-50. Aly SS, Love WJ, Williams DR, Lehenbauer TW, Van Eenennaam A, Drake C, Kass PH, Farver TB. PMID: 25424381; PMCID: PMC4301228.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    69. Results of the BRD CAP project: progress toward identifying genetic markers associated with BRD susceptibility. Anim Health Res Rev. 2014 Dec; 15(2):157-60. Van Eenennaam A, Neibergs H, Seabury C, Taylor J, Wang Z, Scraggs E, Schnabel RD, Decker J, Wojtowicz A, Aly S, Davis J, Blanchard P, Crossley B, Rossitto P, Lehenbauer T, Hagevoort R, Chavez E, Neibergs JS, Womack JE. PMID: 25384903.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    70. Blood calcium dynamics after prophylactic treatment of subclinical hypocalcemia with oral or intravenous calcium. J Dairy Sci. 2014 Nov; 97(11):6901-6. Blanc CD, Van der List M, Aly SS, Rossow HA, Silva-del-Río N. PMID: 25200776.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    71. Effect of Three Colostrum Diets on Passive Transfer of Immunity and Preweaning Health in Calves on a California Dairy following Colostrum Management Training. Vet Med Int. 2014; 2014:698741. Williams DR, Pithua P, Garcia A, Champagne J, Haines DM, Aly SS. PMID: 24864224; PMCID: PMC4016834.
      View in: PubMed   Mentions: 6  
    72. Association between caudal fold tuberculin test responses and results of an ELISA for Mycobacterium avium subsp paratuberculosis and mycobacterial culture of feces in tuberculosis-free dairy herds. J Am Vet Med Assoc. 2014 Mar 01; 244(5):582-7. Brito BP, Aly SS, Anderson RJ, Fossler CP, Garry FB, Gardner IA. PMID: 24548233.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    73. Stochastic model of porcine reproductive and respiratory syndrome virus control strategies on a swine farm in the United States. Am J Vet Res. 2014 Mar; 75(3):260-7. Jeong J, Aly SS, Cano JP, Polson D, Kass PH, Perez AM. PMID: 24564311.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCellsPHPublic Health
    74. Reliability of environmental sampling culture results using the negative binomial intraclass correlation coefficient. Springerplus. 2014; 3:40. Aly SS, Zhao J, Li B, Jiang J. PMID: 24516783; PMCID: PMC3916583.
      View in: PubMed   Mentions: 7  
    75. Survey of beef quality assurance on California dairies. J Dairy Sci. 2014 Mar; 97(3):1348-57. Aly SS, Rossow HA, Acetoze G, Lehenbauer TW, Payne M, Meyer D, Maas J, Hoar B. PMID: 24418277.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsPHPublic Health
    76. Comparison between low-dose, high-sort and high-dose, low-sort semen on conception and calf sex ratio in Jersey heifers and cows. J Dairy Sci. 2014 Mar; 97(3):1782-9. Lucena JA, Kenyon AG, Reynolds JP, Moreno JF, Lenz RW, Carroll D, Lehenbauer TW, Champagne JD, Aly SS. PMID: 24418279.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    77. Cost-effectiveness of diagnostic strategies using quantitative real-time PCR and bacterial culture to identify contagious mastitis cases in large dairy herds. Prev Vet Med. 2014 Mar 01; 113(4):522-35. Murai K, Lehenbauer TW, Champagne JD, Glenn K, Aly SS. PMID: 24485275.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    78. Development of a novel clinical scoring system for on-farm diagnosis of bovine respiratory disease in pre-weaned dairy calves. PeerJ. 2014; 2:e238. Love WJ, Lehenbauer TW, Kass PH, Van Eenennaam AL, Aly SS. PMID: 24482759; PMCID: PMC3898311.
      View in: PubMed   Mentions: 42     Fields:    
    79. Jejunal hematoma in cattle: a retrospective case analysis. J Vet Diagn Invest. 2014 Jan; 26(1):96-103. Adaska JM, Aly SS, Moeller RB, Blanchard PC, Anderson M, Kinde H, Uzal F. PMID: 24532694.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    80. Variation in nutrients formulated and nutrients supplied on 5 California dairies. J Dairy Sci. 2013; 96(11):7371-7381. Rossow HA, Aly SS. PMID: 24035027.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    81. A double-blind block randomized clinical trial on the effect of zinc as a treatment for diarrhea in neonatal Holstein calves under natural challenge conditions. Prev Vet Med. 2013 Nov 01; 112(3-4):338-47. Glover AD, Puschner B, Rossow HA, Lehenbauer TW, Champagne JD, Blanchard PC, Aly SS. PMID: 24074841; PMCID: PMC7114245.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    82. A randomized controlled trial on preweaning morbidity, growth and mortality in Holstein heifers fed a lacteal-derived colostrum replacer or pooled maternal colostrum. BMC Vet Res. 2013 Aug 21; 9:168. Aly SS, Pithua P, Champagne JD, Haines DM. PMID: 23965249; PMCID: PMC3765984.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    83. Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: II. Cow health and performance in early lactation. J Dairy Sci. 2013 Oct; 96(10):6390-9. Arruda AG, Godden S, Rapnicki P, Gorden P, Timms L, Aly SS, Lehenbauer TW, Champagne J. PMID: 23958025.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    84. Efficacy of feeding a lacteal-derived colostrum replacer or pooled maternal colostrum with a low IgG concentration for prevention of failure of passive transfer in dairy calves. J Am Vet Med Assoc. 2013 Jul 15; 243(2):277-82. Pithua P, Aly SS, Haines DM, Champagne JD, Middleton JR, Poock SE. PMID: 23822086.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    85. Synergistic effects of lactic acid and sodium dodecyl sulfate to decontaminate Escherichia coli O157:H7 on cattle hide sections. Foodborne Pathog Dis. 2013 Jul; 10(7):661-3. Elramady MG, Aly SS, Rossitto PV, Crook JA, Cullor JS. PMID: 23594235; PMCID: PMC3693534.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCellsPHPublic Health
    86. Modeling highly pathogenic avian influenza transmission in wild birds and poultry in West Bengal, India. Sci Rep. 2013; 3:2175. Pandit PS, Bunn DA, Pande SA, Aly SS. PMID: 23846233; PMCID: PMC3807259.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCellsPHPublic Health
    87. Cost-effectiveness of diagnostic strategies to identify Mycobacterium avium subspecies paratuberculosis super-shedder cows in a large dairy herd using antibody enzyme-linked immunosorbent assays, quantitative real-time polymerase chain reaction, and bacterial culture. J Vet Diagn Invest. 2012 Sep; 24(5):821-32. Aly SS, Anderson RJ, Whitlock RH, Fyock TL, McAdams SC, Byrem TM, Jiang J, Adaska JM, Gardner IA. PMID: 22807510.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    88. Correlation between Herrold egg yolk medium culture and real-time quantitative polymerase chain reaction results for Mycobacterium avium subspecies paratuberculosis in pooled fecal and environmental samples. J Vet Diagn Invest. 2010 Sep; 22(5):677-83. Aly SS, Mangold BL, Whitlock RH, Sweeney RW, Anderson RJ, Jiang J, Schukken YH, Hovingh E, Wolfgang D, Van Kessel JA, Karns JS, Lombard JE, Smith JM, Gardner IA. PMID: 20807920.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    89. Association between Mycobacterium avium subspecies paratuberculosis infection and milk production in two California dairies. J Dairy Sci. 2010 Mar; 93(3):1030-40. Aly SS, Anderson RJ, Adaska JM, Jiang J, Gardner IA. PMID: 20172223.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    90. Reliability of environmental sampling to quantify Mycobacterium avium subspecies paratuberculosis on California free-stall dairies. J Dairy Sci. 2009 Aug; 92(8):3634-42. Aly SS, Anderson RJ, Whitlock RH, Fyock TL, McAdams S, Adaska JM, Jiang J, Gardner IA. PMID: 19620644.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCellsPHPublic Health
    91. Efficacy of spheroplastic and cell-wall competent vaccines for Mycobacterium avium subsp. paratuberculosis in experimentally-challenged baby goats. Vet Microbiol. 2007 Mar 10; 120(3-4):261-83. Hines ME, Stiver S, Giri D, Whittington L, Watson C, Johnson J, Musgrove J, Pence M, Hurley D, Baldwin C, Gardner IA, Aly S. PMID: 17123751.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCellsPHPublic Health
    92. Evaluation of Mycobacterium avium subsp paratuberculosis infection of dairy cows attributable to infection status of the dam. J Am Vet Med Assoc. 2005 Aug 01; 227(3):450-4. Aly SS, Thurmond MC. PMID: 16121613.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCellsPHPublic Health
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