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Bart C Weimer

TitlePROF-SFT-VM
InstitutionUniversity of California Davis
DepartmentVM: POPULATION HLTH & REPROD
Address4023 VM3B
CA 95616
Phone530-752-6426
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Weimer B, Chen P, Desai PT, Chen D, Shah J. Whole Cell Cross-Linking to Discover Host-Microbe Protein Cognate Receptor/Ligand Pairs. Front Microbiol. 2018; 9:1585. PMID: 30072965.
      View in: PubMed
    2. Chen P, Reiter T, Huang B, Kong N, Weimer B. Prebiotic Oligosaccharides Potentiate Host Protective Responses against L. Monocytogenes Infection. Pathogens. 2017 Dec 19; 6(4). PMID: 29257110.
      View in: PubMed
    3. Arabyan N, Huang BC, Weimer B. Draft Genome Sequences of Salmonella enterica Serovar Typhimurium LT2 with Deleted Chitinases That Are Emerging Virulence Factors. Genome Announc. 2017 Aug 03; 5(31). PMID: 28774970.
      View in: PubMed
    4. Weimer B. 100K Pathogen Genome Project. Genome Announc. 2017 Jul 13; 5(28). PMID: 28705971.
      View in: PubMed
    5. Kong N, Davis M, Arabyan N, Huang BC, Weis AM, Chen P, Thao K, Ng W, Chin N, Foutouhi S, Foutouhi A, Kaufman J, Xie Y, Storey DB, Weimer B. Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project. Genome Announc. 2017 Jul 13; 5(28). PMID: 28705963.
      View in: PubMed
    6. Stevens JR, Jones TR, Lefevre M, Ganesan B, Weimer B. SigTree: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree. Comput Struct Biotechnol J. 2017; 15:372-378. PMID: 28748045.
      View in: PubMed
    7. Arabyan N, Huang BC, Weimer B. Draft Genome Sequences of Salmonella Lysozyme Gene Knockout Mutants. Genome Announc. 2017 Jun 08; 5(23). PMID: 28596411.
      View in: PubMed
    8. Arabyan N, Huang BC, Weimer B. Amylases and Their Importance during Glycan Degradation: Genome Sequence Release of Salmonella Amylase Knockout Strains. Genome Announc. 2017 May 18; 5(20). PMID: 28522713.
      View in: PubMed
    9. Arabyan N, Weis AM, Huang BC, Weimer B. Implication of Sialidases in Salmonella Infection: Genome Release of Sialidase Knockout Strains from Salmonella enterica Serovar Typhimurium LT2. Genome Announc. 2017 May 11; 5(19). PMID: 28495784.
      View in: PubMed
    10. Weis AM, Gilpin B, Huang BC, Kong N, Chen P, Weimer B. Shigella Draft Genome Sequences: Resources for Food Safety and Public Health. Genome Announc. 2017 Apr 20; 5(16). PMID: 28428292.
      View in: PubMed
    11. Weis AM, Clothier KA, Huang BC, Kong N, Weimer B. Draft Genome Sequence of Multidrug-Resistant Abortive Campylobacter jejuni from Northern California. Genome Announc. 2017 Apr 13; 5(15). PMID: 28408683.
      View in: PubMed
    12. Kong N, Ng W, Thao K, Agulto R, Weis A, Kim KS, Korlach J, Hickey L, Kelly L, Lappin S, Weimer B. Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing. Stand Genomic Sci. 2017; 12:27. PMID: 28344744.
      View in: PubMed
    13. Chen P, Kong N, Huang B, Thao K, Ng W, Storey DB, Arabyan N, Foutouhi A, Foutouhi S, Weimer B. 100K Pathogen Genome Project: 306 Listeria Draft Genome Sequences for Food Safety and Public Health. Genome Announc. 2017 Feb 09; 5(6). PMID: 28183778.
      View in: PubMed
    14. Chen P, den Bakker HC, Korlach J, Kong N, Storey DB, Paxinos EE, Ashby M, Clark T, Luong K, Wiedmann M, Weimer B. Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes. Appl Environ Microbiol. 2017 02 01; 83(3). PMID: 27836852.
      View in: PubMed
    15. Weis AM, Huang BC, Storey DB, Kong N, Chen P, Arabyan N, Gilpin B, Mason C, Townsend AK, Smith WA, Byrne BA, Taff CC, Weimer B. Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project. Genome Announc. 2017 Jan 05; 5(1). PMID: 28057746.
      View in: PubMed
    16. Weis AM, Clothier KA, Huang BC, Kong N, Weimer B. Draft Genome Sequences of Campylobacter jejuni Strains That Cause Abortion in Livestock. Genome Announc. 2016 Dec 01; 4(6). PMID: 27908990.
      View in: PubMed
    17. Weis AM, Storey DB, Taff CC, Townsend AK, Huang BC, Kong NT, Clothier KA, Spinner A, Byrne BA, Weimer B. Genomic Comparison of Campylobacter spp. and Their Potential for Zoonotic Transmission between Birds, Primates, and Livestock. Appl Environ Microbiol. 2016 12 15; 82(24):7165-7175. PMID: 27736787.
      View in: PubMed
    18. Arabyan N, Park D, Foutouhi S, Weis AM, Huang BC, Williams CC, Desai P, Shah J, Jeannotte R, Kong N, Lebrilla CB, Weimer B. Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. Sci Rep. 2016 07 08; 6:29525. PMID: 27389966.
      View in: PubMed
    19. L├╝deke CH, Kong N, Weimer B, Fischer M, Jones JL. Complete Genome Sequences of a Clinical Isolate and an Environmental Isolate of Vibrio parahaemolyticus. Genome Announc. 2015 Mar 26; 3(2). PMID: 25814612; PMCID: PMC4384152.
    20. Dhanasekaran AR, Pearson JL, Ganesan B, Weimer B. Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction. BMC Bioinformatics. 2015 Feb 25; 16:62. PMID: 25887958; PMCID: PMC4347650.
    21. Worden N, Wilkop TE, Esteve VE, Jeannotte R, Lathe R, Vernhettes S, Weimer B, Hicks G, Alonso J, Labavitch J, Persson S, Ehrhardt D, Drakakaki G. CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1. Plant Physiol. 2015 Feb; 167(2):381-93. PMID: 25535279; PMCID: PMC4326758.
    22. Shah J, Desai PT, Weimer B. Genetic mechanisms underlying the pathogenicity of cold-stressed Salmonella enterica serovar typhimurium in cultured intestinal epithelial cells. Appl Environ Microbiol. 2014 Nov; 80(22):6943-53. PMID: 25192993; PMCID: PMC4249018.
    23. Kol A, Foutouhi S, Walker NJ, Kong NT, Weimer B, Borjesson DL. Gastrointestinal microbes interact with canine adipose-derived mesenchymal stem cells in vitro and enhance immunomodulatory functions. Stem Cells Dev. 2014 Aug 15; 23(16):1831-43. PMID: 24803072; PMCID: PMC4120524.
    24. Chen P, Jeannotte R, Weimer B. Exploring bacterial epigenomics in the next-generation sequencing era: a new approach for an emerging frontier. Trends Microbiol. 2014 May; 22(5):292-300. PMID: 24725482.
      View in: PubMed
    25. Shah J, Desai PT, Chen D, Stevens JR, Weimer B. Preadaptation to cold stress in Salmonella enterica serovar Typhimurium increases survival during subsequent acid stress exposure. Appl Environ Microbiol. 2013 Dec; 79(23):7281-9. PMID: 24056458; PMCID: PMC3837722.
    26. Parnell JJ, Rompato G, Latta LC, Pfrender ME, Van Nostrand JD, He Z, Zhou J, Andersen G, Champine P, Ganesan B, Weimer B. Functional biogeography as evidence of gene transfer in hypersaline microbial communities. PLoS One. 2010 Sep 23; 5(9):e12919. PMID: 20957119; PMCID: PMC2950788.
    27. Bugger H, Chen D, Riehle C, Soto J, Theobald HA, Hu XX, Ganesan B, Weimer B, Abel ED. Tissue-specific remodeling of the mitochondrial proteome in type 1 diabetic akita mice. Diabetes. 2009 Sep; 58(9):1986-97. PMID: 19542201; PMCID: PMC2731527.
    28. Parnell JJ, Crowl TA, Weimer B, Pfrender ME. Biodiversity in microbial communities: system scale patterns and mechanisms. Mol Ecol. 2009 Apr; 18(7):1455-62. PMID: 19298265.
      View in: PubMed
    29. Pate BJ, White KL, Chen D, Aston KI, Sessions BR, Bunch TD, Weimer B. A novel approach to identify bovine sperm membrane proteins that interact with receptors on the vitelline membrane of bovine oocytes. Mol Reprod Dev. 2008 Apr; 75(4):641-9. PMID: 17886263.
      View in: PubMed
    30. Desai PT, Walsh MK, Weimer B. Solid-phase capture of pathogenic bacteria by using gangliosides and detection with real-time PCR. Appl Environ Microbiol. 2008 Apr; 74(7):2254-8. PMID: 18263751; PMCID: PMC2292596.
    31. Champine PJ, Michaelson J, Weimer B, Welch DR, DeWald DB. Microarray analysis reveals potential mechanisms of BRMS1-mediated metastasis suppression. Clin Exp Metastasis. 2007; 24(7):551-65. PMID: 17896182; PMCID: PMC2214901.
    32. Pate BJ, White KL, Winger QA, Rickords LF, Aston KI, Sessons BR, Li GP, Campbell KD, Weimer B, Bunch TD. Specific integrin subunits in bovine oocytes, including novel sequences for alpha 6 and beta 3 subunits. Mol Reprod Dev. 2007 May; 74(5):600-7. PMID: 17039534.
      View in: PubMed
    33. Ganesan B, Stuart MR, Weimer B. Carbohydrate starvation causes a metabolically active but nonculturable state in Lactococcus lactis. Appl Environ Microbiol. 2007 Apr; 73(8):2498-512. PMID: 17293521; PMCID: PMC1855592.
    34. Liang Y, Gardner DR, Miller CD, Chen D, Anderson AJ, Weimer B, Sims RC. Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. Appl Environ Microbiol. 2006 Dec; 72(12):7821-8. PMID: 17041157; PMCID: PMC1694249.
    35. Ganesan B, Dobrowolski P, Weimer B. Identification of the leucine-to-2-methylbutyric acid catabolic pathway of Lactococcus lactis. Appl Environ Microbiol. 2006 Jun; 72(6):4264-73. PMID: 16751541; PMCID: PMC1489675.
    36. Xie Y, Chou LS, Cutler A, Weimer B. DNA Macroarray profiling of Lactococcus lactis subsp. lactis IL1403 gene expression during environmental stresses. Appl Environ Microbiol. 2004 Nov; 70(11):6738-47. PMID: 15528540; PMCID: PMC525116.
    37. Ganesan B, Seefeldt K, Weimer B. Fatty acid production from amino acids and alpha-keto acids by Brevibacterium linens BL2. Appl Environ Microbiol. 2004 Nov; 70(11):6385-93. PMID: 15528496; PMCID: PMC525268.
    38. Ganesan B, Weimer B. Role of aminotransferase IlvE in production of branched-chain fatty acids by Lactococcus lactis subsp. lactis. Appl Environ Microbiol. 2004 Jan; 70(1):638-41. PMID: 14711703; PMCID: PMC321303.