Oliver Fiehn

Title(s)Professor, Molecular and Cellular Biology
SchoolUniversity of California, Davis
Address1315 GBSF (Genome Center)
CA 95616
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Metabolomics of lung microdissections reveals region- and sex-specific metabolic effects of acute naphthalene exposure in mice. Toxicol Sci. 2021 Sep 08. Stevens NC, Edwards PC, Tran LM, Ding X, Van Winkle LS, Fiehn O. PMID: 34498071.
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    2. Ethnicity-specific alterations of plasma and hepatic lipidomic profiles are related to high NAFLD rate and severity in Hispanic Americans, a pilot study. Free Radic Biol Med. 2021 08 20; 172:490-502. Mazi TA, Borkowski K, Newman JW, Fiehn O, Bowlus CL, Sarkar S, Matsukuma K, Ali MR, Kieffer DA, Wan YY, Stanhope KL, Havel PJ, Medici V. PMID: 34182070.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    3. Quantum Chemistry Calculations for Metabolomics. Chem Rev. 2021 May 26; 121(10):5633-5670. Borges RM, Colby SM, Das S, Edison AS, Fiehn O, Kind T, Lee J, Merrill AT, Merz KM, Metz TO, Nunez JR, Tantillo DJ, Wang LP, Wang S, Renslow RS. PMID: 33979149.
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    4. Author Correction: Pharmacophore hybridisation and nanoscale assembly to discover self-delivering lysosomotropic new-chemical entities for cancer therapy. Nat Commun. 2021 Mar 25; 12(1):2013. Ma Z, Li J, Lin K, Ramachandran M, Zhang D, Showalter M, De Souza C, Lindstrom A, Solano LN, Jia B, Urayama S, Duan Y, Fiehn O, Lin TY, Li M, Li Y. PMID: 33767181.
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    5. Quantification of N6-formylated lysine in bacterial protein digests using liquid chromatography/tandem mass spectrometry despite spontaneous formation and matrix effects. Rapid Commun Mass Spectrom. 2021 Mar 15; 35(5):e9019. Folz JS, Patterson JA, Hanson AD, Fiehn O. PMID: 33617101.
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    6. Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Flight, and Quadrupole Mass Spectrometry. Anal Chem. 2021 02 02; 93(4):2174-2182. Zhang Y, Gao B, Valdiviez L, Zhu C, Gallagher T, Whiteson K, Fiehn O. PMID: 33434014.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    7. Exogenous GLP-1 stimulates TCA cycle and suppresses gluconeogenesis and ketogenesis in late-fasted northern elephant seals pups. Am J Physiol Regul Integr Comp Physiol. 2021 04 01; 320(4):R393-R403. Dhillon J, Viscarra JA, Newman JW, Fiehn O, Crocker DE, Ortiz RM. PMID: 33407018.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    8. Mid-gestation serum lipidomic profile associations with spontaneous preterm birth are influenced by body mass index. PLoS One. 2020; 15(11):e0239115. Borkowski K, Newman JW, Aghaeepour N, Mayo JA, Blazenovic I, Fiehn O, Stevenson DK, Shaw GM, Carmichael SL. PMID: 33201881.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. The Emerging and Diverse Roles of Bis(monoacylglycero) Phosphate Lipids in Cellular Physiology and Disease. Int J Mol Sci. 2020 Oct 29; 21(21). Showalter MR, Berg AL, Nagourney A, Heil H, Carraway KL, Fiehn O. PMID: 33137979.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    10. Predicting in silico electron ionization mass spectra using quantum chemistry. J Cheminform. 2020 Oct 20; 12(1):63. Wang S, Kind T, Tantillo DJ, Fiehn O. PMID: 33372633.
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    11. Pharmacophore hybridisation and nanoscale assembly to discover self-delivering lysosomotropic new-chemical entities for cancer therapy. Nat Commun. 2020 09 15; 11(1):4615. Ma Z, Li J, Lin K, Ramachandran M, Zhang D, Showalter M, De Souza C, Lindstrom A, Solano LN, Jia B, Urayama S, Duan Y, Fiehn O, Lin TY, Li M, Li Y. PMID: 32934241.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    12. A lipidome-wide association study of the lipoprotein insulin resistance index. Lipids Health Dis. 2020 Jun 25; 19(1):153. Bagheri M, Tiwari HK, Murillo AL, Al-Tobasei R, Arnett DK, Kind T, Barupal DK, Fan S, Fiehn O, O'connell J, Montasser M, Aslibekyan S, Irvin MR. PMID: 32586392.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    13. Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis. Hepatol Commun. 2020 Aug; 4(8):1168-1182. Gao B, Duan Y, Lang S, Barupal D, Wu TC, Valdiviez L, Roberts B, Choy YY, Shen T, Byram G, Zhang Y, Fan S, Wancewicz B, Shao Y, Vervier K, Wang Y, Zhou R, Jiang L, Nath S, Loomba R, Abraldes JG, Bataller R, Tu XM, Stärkel P, Lawley TD, Fiehn O, Schnabl B. PMID: 32766476.
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    14. Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics. Anal Chem. 2020 06 02; 92(11):7515-7522. Bonini P, Kind T, Tsugawa H, Barupal DK, Fiehn O. PMID: 32390414.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    15. The foxtail millet (Setaria italica) terpene synthase gene family. Plant J. 2020 07; 103(2):781-800. Karunanithi PS, Berrios DI, Wang S, Davis J, Shen T, Fiehn O, Maloof JN, Zerbe P. PMID: 32282967.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    16. Serum triglycerides in Alzheimer disease: Relation to neuroimaging and CSF biomarkers. Neurology. 2020 05 19; 94(20):e2088-e2098. Bernath MM, Bhattacharyya S, Nho K, Barupal DK, Fiehn O, Baillie R, Risacher SL, Arnold M, Jacobson T, Trojanowski JQ, Shaw LM, Weiner MW, Doraiswamy PM, Kaddurah-Daouk R, Saykin AJ, Alzheimer's Disease Neuroimaging Initiative and Alzheimer's Disease Metabolomics Consortium . PMID: 32358220.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    17. In-Silico-Generated Library for Sensitive Detection of 2-Dimethylaminoethylamine Derivatized FAHFA Lipids Using High-Resolution Tandem Mass Spectrometry. Anal Chem. 2020 04 21; 92(8):5960-5968. Ding J, Kind T, Zhu QF, Wang Y, Yan JW, Fiehn O, Feng YQ. PMID: 32202765.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    18. A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors. Cell. 2020 03 05; 180(5):862-877.e22. Nemet I, Saha PP, Gupta N, Zhu W, Romano KA, Skye SM, Cajka T, Mohan ML, Li L, Wu Y, Funabashi M, Ramer-Tait AE, Naga Prasad SV, Fiehn O, Rey FE, Tang WHW, Fischbach MA, DiDonato JA, Hazen SL. PMID: 32142679.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    19. Perspective: Dietary Biomarkers of Intake and Exposure-Exploration with Omics Approaches. Adv Nutr. 2020 03 01; 11(2):200-215. Maruvada P, Lampe JW, Wishart DS, Barupal D, Chester DN, Dodd D, Djoumbou-Feunang Y, Dorrestein PC, Dragsted LO, Draper J, Duffy LC, Dwyer JT, Emenaker NJ, Fiehn O, Gerszten RE, B Hu F, Karp RW, Klurfeld DM, Laughlin MR, Little AR, Lynch CJ, Moore SC, Nicastro HL, O'Brien DM, Ordovás JM, Osganian SK, Playdon M, Prentice R, Raftery D, Reisdorph N, Roche HM, Ross SA, Sang S, Scalbert A, Srinivas PR, Zeisel SH. PMID: 31386148.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    20. Interaction of Gut Microbiota and High-Sodium, Low-Potassium Diet in Altering Plasma Triglyceride Profiles Revealed by Lipidomics Analysis. Mol Nutr Food Res. 2019 12; 63(24):e1900752. Folz J, Oh YT, Blaženovic I, Richey J, Fiehn O, Youn JH. PMID: 31675161.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    21. Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa. BMC Genomics. 2019 Nov 20; 20(1):875. Guerra FP, Suren H, Holliday J, Richards JH, Fiehn O, Famula R, Stanton BJ, Shuren R, Sykes R, Davis MF, Neale DB. PMID: 31747881.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    22. Utilizing cooled liquid chromatography and chemical derivatization to separate and quantify C3-epimers of 25-hydroxy vitamin D and low abundant 1a,25(OH)2D3: Application in a pediatric population. J Steroid Biochem Mol Biol. 2020 03; 197:105519. DeFelice BC, Pedersen TL, Shorrosh H, Johnson RK, Seifert JA, Norris JM, Fiehn O. PMID: 31715316.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    23. International Ring Trial of a High Resolution Targeted Metabolomics and Lipidomics Platform for Serum and Plasma Analysis. Anal Chem. 2019 11 19; 91(22):14407-14416. Thompson JW, Adams KJ, Adamski J, Asad Y, Borts D, Bowden JA, Byram G, Dang V, Dunn WB, Fernandez F, Fiehn O, Gaul DA, Hühmer AF, Kalli A, Koal T, Koeniger S, Mandal R, Meier F, Naser FJ, O'Neil D, Pal A, Patti GJ, Pham-Tuan H, Prehn C, Raynaud FI, Shen T, Southam AD, St John-Williams L, Sulek K, Vasilopoulou CG, Viant M, Winder CL, Wishart D, Zhang L, Zheng J, Moseley MA. PMID: 31638379.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    24. Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 09; 127(9):97008. Barupal DK, Fiehn O. PMID: 31557052.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansPHPublic Health
    25. Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology. Alzheimers Dement (Amst). 2019 Dec; 11:619-627. Barupal DK, Baillie R, Fan S, Saykin AJ, Meikle PJ, Arnold M, Nho K, Fiehn O, Kaddurah-Daouk R, Alzheimer Disease Metabolomics Consortium . PMID: 31517024.
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    26. Prioritization of metabolic genes as novel therapeutic targets in estrogen-receptor negative breast tumors using multi-omics data and text mining. Oncotarget. 2019 Jun 11; 10(39):3894-3909. Barupal DK, Gao B, Budczies J, Phinney BS, Perroud B, Denkert C, Fiehn O. PMID: 31231467.
      View in: PubMed   Mentions: 3     Fields:    
    27. A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium. Metabolites. 2019 May 22; 9(5). Barupal DK, Zhang Y, Shen T, Fan S, Roberts BS, Fitzgerald P, Wancewicz B, Valdiviez L, Wohlgemuth G, Byram G, Choy YY, Haffner B, Showalter MR, Vaniya A, Bloszies CS, Folz JS, Kind T, Flenniken AM, McKerlie C, Nutter LMJ, Lloyd KC, Fiehn O. PMID: 31121816.
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    28. Multi-Omics Analyses Detail Metabolic Reprogramming in Lipids, Carnitines, and Use of Glycolytic Intermediates between Prostate Small Cell Neuroendocrine Carcinoma and Prostate Adenocarcinoma. Metabolites. 2019 Apr 26; 9(5). Gao B, Lue HW, Podolak J, Fan S, Zhang Y, Serawat A, Alumkal JJ, Fiehn O, Thomas GV. PMID: 31035489.
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    29. Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal Plant Ferula assafoetida. G3 (Bethesda). 2019 03 07; 9(3):807-816. Amini H, Naghavi MR, Shen T, Wang Y, Nasiri J, Khan IA, Fiehn O, Zerbe P, Maloof JN. PMID: 30679248.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    30. Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data. Anal Chem. 2019 03 05; 91(5):3590-3596. Fan S, Kind T, Cajka T, Hazen SL, Tang WHW, Kaddurah-Daouk R, Irvin MR, Arnett DK, Barupal DK, Fiehn O. PMID: 30758187.
      View in: PubMed   Mentions: 28     Fields:    
    31. Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion of 9 Cell-Cell Signaling Molecules from Sympathoadrenal Chromaffin Cells in the Presence of Lithium. ACS Chem Neurosci. 2019 03 20; 10(3):1369-1379. Hook V, Kind T, Podvin S, Palazoglu M, Tran C, Toneff T, Samra S, Lietz C, Fiehn O. PMID: 30698015.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    32. Structure Annotation of All Mass Spectra in Untargeted Metabolomics. Anal Chem. 2019 02 05; 91(3):2155-2162. Blaženovic I, Kind T, Sa MR, Ji J, Vaniya A, Wancewicz B, Roberts BS, Torbašinovic H, Lee T, Mehta SS, Showalter MR, Song H, Kwok J, Jahn D, Kim J, Fiehn O. PMID: 30608141.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    33. Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids. Talanta. 2019 May 01; 196:415-419. DeFelice BC, Fiehn O. PMID: 30683386.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    34. Effects of Gut Bacteria Depletion and High-Na+ and Low-K+ Intake on Circulating Levels of Biogenic Amines. Mol Nutr Food Res. 2019 02; 63(4):e1801184. Blaženovic I, Oh YT, Li F, Ji J, Nguyen AK, Wancewicz B, Bender JM, Fiehn O, Youn JH. PMID: 30513547.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    35. Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort. Sci Data. 2018 11 20; 5:180263. Barupal DK, Fan S, Wancewicz B, Cajka T, Sa M, Showalter MR, Baillie R, Tenenbaum JD, Louie G, Alzheimer’s Disease Neuroimaging Initiative , Alzheimer’s Disease Metabolomics Consortium , Kaddurah-Daouk R, Fiehn O. PMID: 30457571.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    36. Impact of post-collection freezing delay on the reliability of serum metabolomics in samples reflecting the California mid-term pregnancy biobank. Metabolomics. 2018 11 15; 14(11):151. La Frano MR, Carmichael SL, Ma C, Hardley M, Shen T, Wong R, Rosales L, Borkowski K, Pedersen TL, Shaw GM, Stevenson DK, Fiehn O, Newman JW. PMID: 30830400.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    37. Effects of Centella asiatica extract on antioxidant status and liver metabolome of rotenone-treated rats using GC-MS. Biomed Chromatogr. 2019 Feb; 33(2):e4395. Intararuchikul T, Teerapattarakan N, Rodsiri R, Tantisira M, Wohlgemuth G, Fiehn O, Tansawat R. PMID: 30242859.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    38. Increasing Compound Identification Rates in Untargeted Lipidomics Research with Liquid Chromatography Drift Time-Ion Mobility Mass Spectrometry. Anal Chem. 2018 09 18; 90(18):10758-10764. Blaženovic I, Shen T, Mehta SS, Kind T, Ji J, Piparo M, Cacciola F, Mondello L, Fiehn O. PMID: 30096227.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    39. Umbilical cord blood metabolomics reveal distinct signatures of dyslipidemia prior to bronchopulmonary dysplasia and pulmonary hypertension. . 2018 11 01; 315(5):L870-L881. La Frano MR, Fahrmann JF, Grapov D, Pedersen TL, Newman JW, Fiehn O, Underwood MA, Mestan K, Steinhorn RH, Wedgwood S. PMID: 30113229.
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    40. Sex-associated differences in baseline urinary metabolites of healthy adults. Sci Rep. 2018 08 08; 8(1):11883. Fan S, Yeon A, Shahid M, Anger JT, Eilber KS, Fiehn O, Kim J. PMID: 30089834.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    41. Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. Sci Rep. 2018 07 03; 8(1):10056. Nagy-Szakal D, Barupal DK, Lee B, Che X, Williams BL, Kahn EJR, Ukaigwe JE, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Levin B, Hornig M, Fiehn O, Lipkin WI. PMID: 29968805.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
    42. Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. Metabolites. 2018 May 10; 8(2). Blaženovic I, Kind T, Ji J, Fiehn O. PMID: 29748461.
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    43. Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. Curr Opin Biotechnol. 2018 12; 54:1-9. Barupal DK, Fan S, Fiehn O. PMID: 29413745.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    44. Sphingolipid Metabolic Pathway Impacts Thiazide Diuretics Blood Pressure Response: Insights From Genomics, Metabolomics, and Lipidomics. J Am Heart Assoc. 2017 12 29; 7(1). Shahin MH, Gong Y, Frye RF, Rotroff DM, Beitelshees AL, Baillie RA, Chapman AB, Gums JG, Turner ST, Boerwinkle E, Motsinger-Reif A, Fiehn O, Cooper-DeHoff RM, Han X, Kaddurah-Daouk R, Johnson JA. PMID: 29288159.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    45. Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics. Nat Methods. 2018 01; 15(1):53-56. Lai Z, Tsugawa H, Wohlgemuth G, Mehta S, Mueller M, Zheng Y, Ogiwara A, Meissen J, Showalter M, Takeuchi K, Kind T, Beal P, Arita M, Fiehn O. PMID: 29176591.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansCells
    46. Validating Quantitative Untargeted Lipidomics Across Nine Liquid Chromatography-High-Resolution Mass Spectrometry Platforms. Anal Chem. 2017 11 21; 89(22):12360-12368. Cajka T, Smilowitz JT, Fiehn O. PMID: 29064229.
      View in: PubMed   Mentions: 43     Fields:    Translation:Humans
    47. Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets. Sci Rep. 2017 11 06; 7(1):14567. Barupal DK, Fiehn O. PMID: 29109515.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansAnimals
    48. Reference samples guide variable selection for correlation of wine sensory and volatile profiling data. Food Chem. 2018 Nov 30; 267:344-354. Sherman E, Harbertson JF, Greenwood DR, Villas-Bôas SG, Fiehn O, Heymann H. PMID: 29934177.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    49. Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation. Anal Chem. 2017 10 03; 89(19):10171-10180. Lai Z, Kind T, Fiehn O. PMID: 28876899.
      View in: PubMed   Mentions: 4     Fields:    
    50. Metabolomic characteristics of cholesterol-induced non-obese nonalcoholic fatty liver disease in mice. Sci Rep. 2017 07 21; 7(1):6120. Tu LN, Showalter MR, Cajka T, Fan S, Pillai VV, Fiehn O, Selvaraj V. PMID: 28733574.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    51. Integration of metabolomics, transcriptomics, and microRNA expression profiling reveals a miR-143-HK2-glucose network underlying zinc-deficiency-associated esophageal neoplasia. Oncotarget. 2017 Oct 10; 8(47):81910-81925. Fong LY, Jing R, Smalley KJ, Taccioli C, Fahrmann J, Barupal DK, Alder H, Farber JL, Fiehn O, Croce CM. PMID: 29137232.
      View in: PubMed   Mentions: 4     Fields:    
    52. Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy. J Cheminform. 2017 May 25; 9(1):32. Blaženovic I, Kind T, Torbašinovic H, Obrenovic S, Mehta SS, Tsugawa H, Wermuth T, Schauer N, Jahn M, Biedendieck R, Jahn D, Fiehn O. PMID: 29086039.
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    53. Identification of small molecules using accurate mass MS/MS search. Mass Spectrom Rev. 2018 07; 37(4):513-532. Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O. PMID: 28436590.
      View in: PubMed   Mentions: 59     Fields:    Translation:Humans
    54. Critical Assessment of Small Molecule Identification 2016: automated methods. J Cheminform. 2017 Mar 27; 9(1):22. Schymanski EL, Ruttkies C, Krauss M, Brouard C, Kind T, Dührkop K, Allen F, Vaniya A, Verdegem D, Böcker S, Rousu J, Shen H, Tsugawa H, Sajed T, Fiehn O, Ghesquière B, Neumann S. PMID: 29086042.
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    55. Mass Spectral Feature List Optimizer (MS-FLO): A Tool To Minimize False Positive Peak Reports in Untargeted Liquid Chromatography-Mass Spectroscopy (LC-MS) Data Processing. Anal Chem. 2017 03 21; 89(6):3250-3255. DeFelice BC, Mehta SS, Samra S, Cajka T, Wancewicz B, Fahrmann JF, Fiehn O. PMID: 28225594.
      View in: PubMed   Mentions: 28     Fields:    Translation:Humans
    56. Epimetabolites: discovering metabolism beyond building and burning. Curr Opin Chem Biol. 2017 02; 36:70-76. Showalter MR, Cajka T, Fiehn O. PMID: 28213207.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    57. Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration. PLoS One. 2017; 12(1):e0171046. Wanichthanarak K, Fan S, Grapov D, Barupal DK, Fiehn O. PMID: 28141874.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
    58. Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase. Proc Natl Acad Sci U S A. 2017 01 31; 114(5):974-979. Mafu S, Karunanithi PS, Palazzo TA, Harrod BL, Rodriguez SM, Mollhoff IN, O'Brien TE, Tong S, Fiehn O, Tantillo DJ, Bohlmann J, Zerbe P. PMID: 28096378.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    59. LC-MS-Based Lipidomics and Automated Identification of Lipids Using the LipidBlast In-Silico MS/MS Library. Methods Mol Biol. 2017; 1609:149-170. Cajka T, Fiehn O. PMID: 28660581.
      View in: PubMed   Mentions: 25     Fields:    
    60. Pharmacometabolomic signature links simvastatin therapy and insulin resistance. Metabolomics. 2017 01; 13. Elbadawi-Sidhu M, Baillie RA, Zhu H, Chen YI, Goodarzi MO, Rotter JI, Krauss RM, Fiehn O, Kaddurah-Daouk R. PMID: 29732238.
      View in: PubMed   Mentions: 3     Fields:    
    61. Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis. Sci Rep. 2016 12 15; 6:39227. Kind T, Cho E, Park TD, Deng N, Liu Z, Lee T, Fiehn O, Kim J. PMID: 27976711.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    62. Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest. Phytochem Lett. 2017 Sep; 21:306-312. Vaniya A, Samra SN, Palazoglu M, Tsugawa H, Fiehn O. PMID: 31576201.
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    63. Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry. Phytochem Lett. 2017 Sep; 21:313-319. Kind T, Fiehn O. PMID: 29225718.
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    64. Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats. Chem Res Toxicol. 2016 11 21; 29(11):1818-1827. Barupal DK, Pinkerton KE, Hood C, Kind T, Fiehn O. PMID: 27788581.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsPHPublic Health
    65. SPLASH, a hashed identifier for mass spectra. Nat Biotechnol. 2016 11 08; 34(11):1099-1101. Wohlgemuth G, Mehta SS, Mejia RF, Neumann S, Pedrosa D, Pluskal T, Schymanski EL, Willighagen EL, Wilson M, Wishart DS, Arita M, Dorrestein PC, Bandeira N, Wang M, Schulze T, Salek RM, Steinbeck C, Nainala VC, Mistrik R, Nishioka T, Fiehn O. PMID: 27824832.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
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    93. Habitual physical activity and plasma metabolomic patterns distinguish individuals with low vs. high weight loss during controlled energy restriction. J Nutr. 2015 Apr; 145(4):681-90. Piccolo BD, Keim NL, Fiehn O, Adams SH, Van Loan MD, Newman JW. PMID: 25833772.
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    96. LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries. Anal Chem. 2014 Nov 18; 86(22):11024-7. Kind T, Okazaki Y, Saito K, Fiehn O. PMID: 25340521.
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    101. Metabolomic analysis using porcine skin: a pilot study of analytical techniques. Dermatol Online J. 2014 Jun 15; 20(6). Wu J, Fiehn O, Armstrong AW. PMID: 24945638.
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    103. Is diabetes mellitus-linked amino acid signature associated with ß-blocker-induced impaired fasting glucose? Circ Cardiovasc Genet. 2014 Apr; 7(2):199-205. Cooper-Dehoff RM, Hou W, Weng L, Baillie RA, Beitelshees AL, Gong Y, Shahin MH, Turner ST, Chapman A, Gums JG, Boyle SH, Zhu H, Wikoff WR, Boerwinkle E, Fiehn O, Frye RF, Kaddurah-Daouk R, Johnson JA. PMID: 24627569.
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    104. Comparative metabolomics of estrogen receptor positive and estrogen receptor negative breast cancer: alterations in glutamine and beta-alanine metabolism. J Proteomics. 2013 Dec 06; 94:279-88. Budczies J, Brockmöller SF, Müller BM, Barupal DK, Richter-Ehrenstein C, Kleine-Tebbe A, Griffin JL, Orešic M, Dietel M, Denkert C, Fiehn O. PMID: 24125731.
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    106. Pharmacometabolomics of response to sertraline and to placebo in major depressive disorder - possible role for methoxyindole pathway. PLoS One. 2013; 8(7):e68283. Zhu H, Bogdanov MB, Boyle SH, Matson W, Sharma S, Matson S, Churchill E, Fiehn O, Rush JA, Krishnan RR, Pickering E, Delnomdedieu M, Kaddurah-Daouk R, Pharmacometabolomics Research Network . PMID: 23874572.
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    108. Comparing metabolomic and pathologic biomarkers alone and in combination for discriminating Alzheimer's disease from normal cognitive aging. Acta Neuropathol Commun. 2013 Jun 27; 1:28. Motsinger-Reif AA, Zhu H, Kling MA, Matson W, Sharma S, Fiehn O, Reif DM, Appleby DH, Doraiswamy PM, Trojanowski JQ, Kaddurah-Daouk R, Arnold SE. PMID: 24252434.
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    116. Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study. BMC Genomics. 2012 Jul 23; 13:334. Budczies J, Denkert C, Müller BM, Brockmöller SF, Klauschen F, Györffy B, Dietel M, Richter-Ehrenstein C, Marten U, Salek RM, Griffin JL, Hilvo M, Orešic M, Wohlgemuth G, Fiehn O. PMID: 22823888.
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    128. Metabolite profile changes in xylem sap and leaf extracts of strategy I plants in response to iron deficiency and resupply. Front Plant Sci. 2011; 2:66. Rellán-Álvarez R, El-Jendoubi H, Wohlgemuth G, Abadía A, Fiehn O, Abadía J, Alvarez-Fernández A. PMID: 22645546.
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    135. Informatics for cross-sample analysis with comprehensive two-dimensional gas chromatography and high-resolution mass spectrometry (GCxGC-HRMS). Talanta. 2011 Jan 30; 83(4):1279-88. Reichenbach SE, Tian X, Tao Q, Ledford EB, Wu Z, Fiehn O. PMID: 21215864.
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    136. The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports. Bioinformatics. 2010 Oct 15; 26(20):2647-8. Wohlgemuth G, Haldiya PK, Willighagen E, Kind T, Fiehn O. PMID: 20829444.
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    137. Advances in structure elucidation of small molecules using mass spectrometry. Bioanal Rev. 2010 Dec; 2(1-4):23-60. Kind T, Fiehn O. PMID: 21289855.
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    138. Evaluation of sampling and extraction methodologies for the global metabolic profiling of Saccharophagus degradans. Anal Chem. 2010 Aug 01; 82(15):6660-6. Shin MH, Lee DY, Liu KH, Fiehn O, Kim KH. PMID: 20669998.
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    139. Changes in the proteomic and metabolic profiles of Beta vulgaris root tips in response to iron deficiency and resupply. BMC Plant Biol. 2010 Jun 21; 10:120. Rellán-Alvarez R, Andaluz S, Rodríguez-Celma J, Wohlgemuth G, Zocchi G, Alvarez-Fernández A, Fiehn O, López-Millán AF, Abadía J. PMID: 20565974.
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    140. Metabolomic and transcriptomic analysis of the rice response to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae. Metabolomics. 2010 Sep; 6(3):451-465. Sana TR, Fischer S, Wohlgemuth G, Katrekar A, Jung KH, Ronald PC, Fiehn O. PMID: 20676379.
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    141. Hydrocarbon phenotyping of algal species using pyrolysis-gas chromatography mass spectrometry. BMC Biotechnol. 2010 May 21; 10:40. Barupal DK, Kind T, Kothari SL, Lee DY, Fiehn O. PMID: 20492649.
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    142. Determination of elemental compositions by gas chromatography/time-of-flight mass spectrometry using chemical and electron ionization. Rapid Commun Mass Spectrom. 2010 Apr 30; 24(8):1172-80. Abate S, Ahn YG, Kind T, Cataldi TR, Fiehn O. PMID: 20301109.
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    143. Long-chain fatty acid combustion rate is associated with unique metabolite profiles in skeletal muscle mitochondria. PLoS One. 2010 Mar 24; 5(3):e9834. Seifert EL, Fiehn O, Bezaire V, Bickel DR, Wohlgemuth G, Adams SH, Harper ME. PMID: 20352092.
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    144. Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40. N Biotechnol. 2010 May 31; 27(2):156-68. Shin MH, Lee DY, Wohlgemuth G, Choi IG, Fiehn O, Kim KH. PMID: 20215059.
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    145. Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans. Biotechnol Bioeng. 2010 Feb 15; 105(3):477-88. Shin MH, Lee DY, Skogerson K, Wohlgemuth G, Choi IG, Fiehn O, Kim KH. PMID: 19806675.
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    146. PlantMetabolomics.org: a web portal for plant metabolomics experiments. Plant Physiol. 2010 Apr; 152(4):1807-16. Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, Sumner LW, Welti R, Nikolau BJ, Rhee SY, Dickerson JA. PMID: 20147492.
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    147. A metabolomics approach using juvenile cystic mice to identify urinary biomarkers and altered pathways in polycystic kidney disease. Am J Physiol Renal Physiol. 2010 Apr; 298(4):F909-22. Taylor SL, Ganti S, Bukanov NO, Chapman A, Fiehn O, Osier M, Kim K, Weiss RH. PMID: 20130118.
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    148. Analysis of early host responses for asymptomatic disease detection and management of specialty crops. Crit Rev Immunol. 2010; 30(3):277-89. Dandekar AM, Martinelli F, Davis CE, Bhushan A, Zhao W, Fiehn O, Skogerson K, Wohlgemuth G, D'Souza R, Roy S, Reagan RL, Lin D, Cary R, Pardington P, Gupta G. PMID: 20370635.
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    149. FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry. Anal Chem. 2009 Dec 15; 81(24):10038-48. Kind T, Wohlgemuth G, Lee DY, Lu Y, Palazoglu M, Shahbaz S, Fiehn O. PMID: 19928838.
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    150. What are the obstacles for an integrated system for comprehensive interpretation of cross-platform metabolic profile data? Bioanalysis. 2009 Dec; 1(9):1511-4. Kind T, Fiehn O. PMID: 21083097.
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    151. Software platform virtualization in chemistry research and university teaching. J Cheminform. 2009 Nov 16; 1:18. Kind T, Leamy T, Leary JA, Fiehn O. PMID: 20150997.
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    152. Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches. PLoS One. 2009 Oct 16; 4(10):e7490. Matsuda F, Shinbo Y, Oikawa A, Hirai MY, Fiehn O, Kanaya S, Saito K. PMID: 19847304.
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    153. Human gut microbiome adopts an alternative state following small bowel transplantation. Proc Natl Acad Sci U S A. 2009 Oct 06; 106(40):17187-92. Hartman AL, Lough DM, Barupal DK, Fiehn O, Fishbein T, Zasloff M, Eisen JA. PMID: 19805153.
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    154. Gene regulation in parthenocarpic tomato fruit. J Exp Bot. 2009; 60(13):3873-90. Martinelli F, Uratsu SL, Reagan RL, Chen Y, Tricoli D, Fiehn O, Rocke DM, Gasser CS, Dandekar AM. PMID: 19700496.
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    155. Comparison of gas chromatography-coupled time-of-flight mass spectrometry and 1H nuclear magnetic resonance spectroscopy metabolite identification in white wines from a sensory study investigating wine body. J Agric Food Chem. 2009 Aug 12; 57(15):6899-907. Skogerson K, Runnebaum R, Wohlgemuth G, de Ropp J, Heymann H, Fiehn O. PMID: 19588931.
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    156. Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research. Metabolomics. 2009 Dec; 5(4):435-458. Scalbert A, Brennan L, Fiehn O, Hankemeier T, Kristal BS, van Ommen B, Pujos-Guillot E, Verheij E, Wishart D, Wopereis S. PMID: 20046865.
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    157. How large is the metabolome? A critical analysis of data exchange practices in chemistry. PLoS One. 2009; 4(5):e5440. Kind T, Scholz M, Fiehn O. PMID: 19415114.
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    158. Metabolite profiling of human colon carcinoma--deregulation of TCA cycle and amino acid turnover. Mol Cancer. 2008 Sep 18; 7:72. Denkert C, Budczies J, Weichert W, Wohlgemuth G, Scholz M, Kind T, Niesporek S, Noske A, Buckendahl A, Dietel M, Fiehn O. PMID: 18799019.
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    159. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol. 2008 Aug; 26(8):889-96. Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hancock JM, Hardy NW, Hermjakob H, Julian RK, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Le Novère N, Leebens-Mack J, Lewis SE, Lord P, Mallon AM, Marthandan N, Masuya H, McNally R, Mehrle A, Morrison N, Orchard S, Quackenbush J, Reecy JM, Robertson DG, Rocca-Serra P, Rodriguez H, Rosenfelder H, Santoyo-Lopez J, Scheuermann RH, Schober D, Smith B, Snape J, Stoeckert CJ, Tipton K, Sterk P, Untergasser A, Vandesompele J, Wiemann S. PMID: 18688244.
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    160. High quality metabolomic data for Chlamydomonas reinhardtii. Plant Methods. 2008 Apr 28; 4:7. Lee DY, Fiehn O. PMID: 18442406.
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    161. Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry. Trends Analyt Chem. 2008 Mar; 27(3):261-269. Fiehn O. PMID: 18497891.
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    162. Quality control for plant metabolomics: reporting MSI-compliant studies. Plant J. 2008 Feb; 53(4):691-704. Fiehn O, Wohlgemuth G, Scholz M, Kind T, Lee DY, Lu Y, Moon S, Nikolau B. PMID: 18269577.
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    163. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J. 2008 Mar; 53(6):960-72. Lisec J, Meyer RC, Steinfath M, Redestig H, Becher M, Witucka-Wall H, Fiehn O, Törjék O, Selbig J, Altmann T, Willmitzer L. PMID: 18047556.
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    164. Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics. 2007 Sep; 3(3):211-221. Sumner LW, Amberg A, Barrett D, Beale MH, Beger R, Daykin CA, Fan TW, Fiehn O, Goodacre R, Griffin JL, Hankemeier T, Hardy N, Harnly J, Higashi R, Kopka J, Lane AN, Lindon JC, Marriott P, Nicholls AW, Reily MD, Thaden JJ, Viant MR. PMID: 24039616.
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    165. Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinformatics. 2007 Mar 27; 8:105. Kind T, Fiehn O. PMID: 17389044.
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    166. A comprehensive urinary metabolomic approach for identifying kidney cancerr. Anal Biochem. 2007 Apr 15; 363(2):185-95. Kind T, Tolstikov V, Fiehn O, Weiss RH. PMID: 17316536.
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    167. Application of liquid chromatography-mass spectrometry analysis in metabolomics: reversed-phase monolithic capillary chromatography and hydrophilic chromatography coupled to electrospray ionization-mass spectrometry. Methods Mol Biol. 2007; 358:141-55. Tolstikov VV, Fiehn O, Tanaka N. PMID: 17035685.
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    168. SetupX--a public study design database for metabolomic projects. Pac Symp Biocomput. 2007; 169-80. Scholz M, Fiehn O. PMID: 17990490.
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    169. Metabolite profiling in blood plasma. Methods Mol Biol. 2007; 358:3-17. Fiehn O, Kind T. PMID: 17035677.
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    170. Pathway analysis of kidney cancer using proteomics and metabolic profiling. Mol Cancer. 2006 Nov 24; 5:64. Perroud B, Lee J, Valkova N, Dhirapong A, Lin PY, Fiehn O, Kültz D, Weiss RH. PMID: 17123452.
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    171. Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors. Cancer Res. 2006 Nov 15; 66(22):10795-804. Denkert C, Budczies J, Kind T, Weichert W, Tablack P, Sehouli J, Niesporek S, Könsgen D, Dietel M, Fiehn O. PMID: 17108116.
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    172. Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics. 2006 Apr 28; 7:234. Kind T, Fiehn O. PMID: 16646969.
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    173. Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results. Brief Bioinform. 2006 Jun; 7(2):159-65. Castle AL, Fiehn O, Kaddurah-Daouk R, Lindon JC. PMID: 16772263.
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    174. Establishing reporting standards for metabolomic and metabonomic studies: a call for participation. OMICS. 2006; 10(2):158-63. Fiehn O, Kristal B, van Ommen B, Sumner LW, Sansone SA, Taylor C, Hardy N, Kaddurah-Daouk R. PMID: 16901221.
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    175. Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc Natl Acad Sci U S A. 2005 Oct 04; 102(40):14458-62. Catchpole GS, Beckmann M, Enot DP, Mondhe M, Zywicki B, Taylor J, Hardy N, Smith A, King RD, Kell DB, Fiehn O, Draper J. PMID: 16186495.
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    176. Statistical methods for comparing comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry results: metabolomic analysis of mouse tissue extracts. J Chromatogr A. 2005 Sep 09; 1086(1-2):83-90. Shellie RA, Welthagen W, Zrostliková J, Spranger J, Ristow M, Fiehn O, Zimmermann R. PMID: 16130658.
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    177. Metabolic profiling of laser microdissected vascular bundles of Arabidopsis thaliana. Plant Methods. 2005 Aug 18; 1(1):2. Schad M, Mungur R, Fiehn O, Kehr J. PMID: 16270917.
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    178. A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol. 2004 Dec; 22(12):1601-6. Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, Kopka J, Lane GA, Lange BM, Liu JR, Mendes P, Nikolau BJ, Oliver SG, Paton NW, Rhee S, Roessner-Tunali U, Saito K, Smedsgaard J, Sumner LW, Wang T, Walsh S, Wurtele ES, Kell DB. PMID: 15583675.
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    179. Potential of metabolomics as a functional genomics tool. Trends Plant Sci. 2004 Sep; 9(9):418-25. Bino RJ, Hall RD, Fiehn O, Kopka J, Saito K, Draper J, Nikolau BJ, Mendes P, Roessner-Tunali U, Beale MH, Trethewey RN, Lange BM, Wurtele ES, Sumner LW. PMID: 15337491.
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    180. Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. Rapid Commun Mass Spectrom. 2004; 18(6):643-50. Wienkoop S, Glinski M, Tanaka N, Tolstikov V, Fiehn O, Weckwerth W. PMID: 15052571.
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    181. Plant metabolomics: the missing link in functional genomics strategies. Plant Cell. 2002 Jul; 14(7):1437-40. Hall R, Beale M, Fiehn O, Hardy N, Sumner L, Bino R. PMID: 12119365.
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    182. Metabolomics--the link between genotypes and phenotypes. Plant Mol Biol. 2002 Jan; 48(1-2):155-71. Fiehn O. PMID: 11860207.
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    183. Application of metabolomics to plant genotype discrimination using statistics and machine learning. Bioinformatics. 2002; 18 Suppl 2:S241-8. Taylor J, King RD, Altmann T, Fiehn O. PMID: 12386008.
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