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Oliver Fiehn

Title(s)PROF-AY, MOLECULAR & CELLULAR BIO
Phone530-754-8258
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Amini H, Naghavi MR, Shen T, Wang Y, Nasiri J, Khan IA, Fiehn O, Zerbe P, Maloof JN. Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal Plant Ferula assafoetida. G3 (Bethesda). 2019 03 07; 9(3):807-816. PMID: 30679248.
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    2. Fan S, Kind T, Cajka T, Hazen SL, Tang WHW, Kaddurah-Daouk R, Irvin MR, Arnett DK, Barupal DK, Fiehn O. Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data. Anal Chem. 2019 Feb 19. PMID: 30758187.
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    3. Hook V, Kind T, Podvin S, Palazoglu M, Tran C, Toneff T, Samra S, Lietz C, Fiehn O. Metabolomics Analyses of 14 Classical Neurotransmitters by GC-TOF with LC-MS Illustrates Secretion of 9 Cell-Cell Signaling Molecules from Sympathoadrenal Chromaffin Cells in the Presence of Lithium. ACS Chem Neurosci. 2019 Jan 23. PMID: 30698015.
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    4. Blaženovic I, Kind T, Sa MR, Ji J, Vaniya A, Wancewicz B, Roberts BS, Torbašinovic H, Lee T, Mehta SS, Showalter MR, Song H, Kwok J, Jahn D, Kim J, Fiehn O. Structure Annotation of All Mass Spectra in Untargeted Metabolomics. Anal Chem. 2019 Feb 05; 91(3):2155-2162. PMID: 30608141.
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    5. DeFelice BC, Fiehn O. Rapid LC-MS/MS quantification of cancer related acetylated polyamines in human biofluids. Talanta. 2019 May 01; 196:415-419. PMID: 30683386.
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    6. Blaženovic I, Oh YT, Li F, Ji J, Nguyen AK, Wancewicz B, Bender JM, Fiehn O, Youn JH. Effects of Gut Bacteria Depletion and High-Na+ and Low-K+ Intake on Circulating Levels of Biogenic Amines. Mol Nutr Food Res. 2018 Dec 04; e1801184. PMID: 30513547.
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    7. Barupal DK, Fan S, Wancewicz B, Cajka T, Sa M, Showalter MR, Baillie R, Tenenbaum JD, Louie G, Kaddurah-Daouk R, Fiehn O. Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort. Sci Data. 2018 11 20; 5:180263. PMID: 30457571.
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    8. La Frano MR, Carmichael SL, Ma C, Hardley M, Shen T, Wong R, Rosales L, Borkowski K, Pedersen TL, Shaw GM, Stevenson DK, Fiehn O, Newman JW. Impact of post-collection freezing delay on the reliability of serum metabolomics in samples reflecting the California mid-term pregnancy biobank. Metabolomics. 2018 Nov 15; 14(11):151. PMID: 30830400.
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    9. Intararuchikul T, Teerapattarakan N, Rodsiri R, Tantisira M, Wohlgemuth G, Fiehn O, Tansawat R. Effects of Centella asiatica extract on antioxidant status and liver metabolome of rotenone-treated rats using GC-MS. Biomed Chromatogr. 2018 Sep 22; e4395. PMID: 30242859.
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    10. Blaženovic I, Shen T, Mehta SS, Kind T, Ji J, Piparo M, Cacciola F, Mondello L, Fiehn O. Increasing Compound Identification Rates in Untargeted Lipidomics Research with Liquid Chromatography Drift Time-Ion Mobility Mass Spectrometry. Anal Chem. 2018 Sep 18; 90(18):10758-10764. PMID: 30096227.
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    11. La Frano M, Fahrmann J, Grapov D, Pedersen T, Newman JW, Fiehn O, Underwood MA, Mestan KK, Steinhorn R, Wedgwood S. Umbilical Cord Blood Metabolomics Reveal Distinct Signatures of Dyslipidemia Prior to Bronchopulmonary Dysplasia and Pulmonary Hypertension. Am J Physiol Lung Cell Mol Physiol. 2018 Aug 16. PMID: 30113229.
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    12. Fan S, Yeon A, Shahid M, Anger JT, Eilber KS, Fiehn O, Kim J. Sex-associated differences in baseline urinary metabolites of healthy adults. Sci Rep. 2018 Aug 08; 8(1):11883. PMID: 30089834.
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    13. Nagy-Szakal D, Barupal DK, Lee B, Che X, Williams BL, Kahn EJR, Ukaigwe JE, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Levin B, Hornig M, Fiehn O, Lipkin WI. Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics. Sci Rep. 2018 Jul 03; 8(1):10056. PMID: 29968805.
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    14. Blaženovic I, Kind T, Ji J, Fiehn O. Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. Metabolites. 2018 May 10; 8(2). PMID: 29748461.
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    15. Barupal DK, Fan S, Fiehn O. Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. Curr Opin Biotechnol. 2018 Dec; 54:1-9. PMID: 29413745.
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    16. Shahin MH, Gong Y, Frye RF, Rotroff DM, Beitelshees AL, Baillie RA, Chapman AB, Gums JG, Turner ST, Boerwinkle E, Motsinger-Reif A, Fiehn O, Cooper-DeHoff RM, Han X, Kaddurah-Daouk R, Johnson JA. Sphingolipid Metabolic Pathway Impacts Thiazide Diuretics Blood Pressure Response: Insights From Genomics, Metabolomics, and Lipidomics. J Am Heart Assoc. 2017 Dec 29; 7(1). PMID: 29288159.
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    17. Lai Z, Tsugawa H, Wohlgemuth G, Mehta S, Mueller M, Zheng Y, Ogiwara A, Meissen J, Showalter M, Takeuchi K, Kind T, Beal P, Arita M, Fiehn O. Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics. Nat Methods. 2018 Jan; 15(1):53-56. PMID: 29176591.
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    18. Cajka T, Smilowitz JT, Fiehn O. Validating Quantitative Untargeted Lipidomics Across Nine Liquid Chromatography-High-Resolution Mass Spectrometry Platforms. Anal Chem. 2017 Nov 21; 89(22):12360-12368. PMID: 29064229.
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    19. Barupal DK, Fiehn O. Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets. Sci Rep. 2017 Nov 06; 7(1):14567. PMID: 29109515.
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    20. Sherman E, Harbertson JF, Greenwood DR, Villas-Bôas SG, Fiehn O, Heymann H. Reference samples guide variable selection for correlation of wine sensory and volatile profiling data. Food Chem. 2018 Nov 30; 267:344-354. PMID: 29934177.
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    21. Lai Z, Kind T, Fiehn O. Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation. Anal Chem. 2017 Oct 03; 89(19):10171-10180. PMID: 28876899.
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    22. Tu LN, Showalter MR, Cajka T, Fan S, Pillai VV, Fiehn O, Selvaraj V. Metabolomic characteristics of cholesterol-induced non-obese nonalcoholic fatty liver disease in mice. Sci Rep. 2017 07 21; 7(1):6120. PMID: 28733574.
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    23. Fong LY, Jing R, Smalley KJ, Taccioli C, Fahrmann J, Barupal DK, Alder H, Farber JL, Fiehn O, Croce CM. Integration of metabolomics, transcriptomics, and microRNA expression profiling reveals a miR-143-HK2-glucose network underlying zinc-deficiency-associated esophageal neoplasia. Oncotarget. 2017 Oct 10; 8(47):81910-81925. PMID: 29137232.
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    24. Blaženovic I, Kind T, Torbašinovic H, Obrenovic S, Mehta SS, Tsugawa H, Wermuth T, Schauer N, Jahn M, Biedendieck R, Jahn D, Fiehn O. Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy. J Cheminform. 2017 May 25; 9(1):32. PMID: 29086039.
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    25. Kind T, Tsugawa H, Cajka T, Ma Y, Lai Z, Mehta SS, Wohlgemuth G, Barupal DK, Showalter MR, Arita M, Fiehn O. Identification of small molecules using accurate mass MS/MS search. Mass Spectrom Rev. 2018 Jul; 37(4):513-532. PMID: 28436590.
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    26. Schymanski EL, Ruttkies C, Krauss M, Brouard C, Kind T, Dührkop K, Allen F, Vaniya A, Verdegem D, Böcker S, Rousu J, Shen H, Tsugawa H, Sajed T, Fiehn O, Ghesquière B, Neumann S. Critical Assessment of Small Molecule Identification 2016: automated methods. J Cheminform. 2017 Mar 27; 9(1):22. PMID: 29086042.
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    27. DeFelice BC, Mehta SS, Samra S, Cajka T, Wancewicz B, Fahrmann JF, Fiehn O. Mass Spectral Feature List Optimizer (MS-FLO): A Tool To Minimize False Positive Peak Reports in Untargeted Liquid Chromatography-Mass Spectroscopy (LC-MS) Data Processing. Anal Chem. 2017 03 21; 89(6):3250-3255. PMID: 28225594.
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    28. Showalter MR, Cajka T, Fiehn O. Epimetabolites: discovering metabolism beyond building and burning. Curr Opin Chem Biol. 2017 02; 36:70-76. PMID: 28213207.
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    29. Wanichthanarak K, Fan S, Grapov D, Barupal DK, Fiehn O. Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration. PLoS One. 2017; 12(1):e0171046. PMID: 28141874.
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    30. Mafu S, Karunanithi PS, Palazzo TA, Harrod BL, Rodriguez SM, Mollhoff IN, O'Brien TE, Tong S, Fiehn O, Tantillo DJ, Bohlmann J, Zerbe P. Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase. Proc Natl Acad Sci U S A. 2017 01 31; 114(5):974-979. PMID: 28096378.
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    31. Cajka T, Fiehn O. LC-MS-Based Lipidomics and Automated Identification of Lipids Using the LipidBlast In-Silico MS/MS Library. Methods Mol Biol. 2017; 1609:149-170. PMID: 28660581.
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    32. Elbadawi-Sidhu M, Baillie RA, Zhu H, Chen YI, Goodarzi MO, Rotter JI, Krauss RM, Fiehn O, Kaddurah-Daouk R. Pharmacometabolomic signature links simvastatin therapy and insulin resistance. Metabolomics. 2017 01; 13. PMID: 29732238.
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    33. Kind T, Cho E, Park TD, Deng N, Liu Z, Lee T, Fiehn O, Kim J. Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis. Sci Rep. 2016 12 15; 6:39227. PMID: 27976711.
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    34. Kind T, Fiehn O. Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry. Phytochem Lett. 2017 Sep; 21:313-319. PMID: 29225718.
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    35. Barupal DK, Pinkerton KE, Hood C, Kind T, Fiehn O. Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats. Chem Res Toxicol. 2016 11 21; 29(11):1818-1827. PMID: 27788581.
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    36. Wohlgemuth G, Mehta SS, Mejia RF, Neumann S, Pedrosa D, Pluskal T, Schymanski EL, Willighagen EL, Wilson M, Wishart DS, Arita M, Dorrestein PC, Bandeira N, Wang M, Schulze T, Salek RM, Steinbeck C, Nainala VC, Mistrik R, Nishioka T, Fiehn O. SPLASH, a hashed identifier for mass spectra. Nat Biotechnol. 2016 Nov 08; 34(11):1099-1101. PMID: 27824832.
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    37. Fahrmann JF, Grapov D, Phinney BS, Stroble C, DeFelice BC, Rom W, Gandara DR, Zhang Y, Fiehn O, Pass H, Miyamoto S. Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival. Clin Proteomics. 2016; 13:31. PMID: 27799870.
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    38. Cajka T, Garay LA, Sitepu IR, Boundy-Mills KL, Fiehn O. Multiplatform Mass Spectrometry-Based Approach Identifies Extracellular Glycolipids of the Yeast Rhodotorula babjevae UCDFST 04-877. J Nat Prod. 2016 10 28; 79(10):2580-2589. PMID: 27669091.
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    39. Beger RD, Dunn W, Schmidt MA, Gross SS, Kirwan JA, Cascante M, Brennan L, Wishart DS, Oresic M, Hankemeier T, Broadhurst DI, Lane AN, Suhre K, Kastenmüller G, Sumner SJ, Thiele I, Fiehn O, Kaddurah-Daouk R. Metabolomics enables precision medicine: "A White Paper, Community Perspective". Metabolomics. 2016; 12(10):149. PMID: 27642271.
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    40. Tsugawa H, Kind T, Nakabayashi R, Yukihira D, Tanaka W, Cajka T, Saito K, Fiehn O, Arita M. Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software. Anal Chem. 2016 08 16; 88(16):7946-58. PMID: 27419259.
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    41. de Oliveira FA, Shahin MH, Gong Y, McDonough CW, Beitelshees AL, Gums JG, Chapman AB, Boerwinkle E, Turner ST, Frye RF, Fiehn O, Kaddurah-Daouk R, Johnson JA, Cooper-DeHoff RM. Novel plasma biomarker of atenolol-induced hyperglycemia identified through a metabolomics-genomics integrative approach. Metabolomics. 2016 08; 12(8). PMID: 28217400.
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    42. Shahin MH, Gong Y, McDonough CW, Rotroff DM, Beitelshees AL, Garrett TJ, Gums JG, Motsinger-Reif A, Chapman AB, Turner ST, Boerwinkle E, Frye RF, Fiehn O, Cooper-DeHoff RM, Kaddurah-Daouk R, Johnson JA. A Genetic Response Score for Hydrochlorothiazide Use: Insights From Genomics and Metabolomics Integration. Hypertension. 2016 09; 68(3):621-9. PMID: 27381900; PMCID: PMC4982802 [Available on 09/01/17].
    43. Lerma-Ortiz C, Jeffryes JG, Cooper AJ, Niehaus TD, Thamm AM, Frelin O, Aunins T, Fiehn O, de Crécy-Lagard V, Henry CS, Hanson AD. 'Nothing of chemistry disappears in biology': the Top 30 damage-prone endogenous metabolites. Biochem Soc Trans. 2016 06 15; 44(3):961-71. PMID: 27284066.
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    44. Rotroff DM, Oki NO, Liang X, Yee SW, Stocker SL, Corum DG, Meisner M, Fiehn O, Motsinger-Reif AA, Giacomini KM, Kaddurah-Daouk R. Pharmacometabolomic Assessment of Metformin in Non-diabetic, African Americans. Front Pharmacol. 2016; 7:135. PMID: 27378919; PMCID: PMC4906013.
    45. Albrecht U, Fiehn O, Bowman KD. Metabolic variations in different citrus rootstock cultivars associated with different responses to Huanglongbing. Plant Physiol Biochem. 2016 Oct; 107:33-44. PMID: 27236226.
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    46. Karakas SE, Perroud B, Kind T, Palazoglu M, Fiehn O. Changes in plasma metabolites and glucose homeostasis during omega-3 polyunsaturated fatty acid supplementation in women with polycystic ovary syndrome. BBA Clin. 2016 Jun; 5:179-85. PMID: 27182493; PMCID: PMC4857160.
    47. Fiehn O. Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling. Curr Protoc Mol Biol. 2016 Apr 01; 114:30.4.1-30.4.32. PMID: 27038389; PMCID: PMC4829120 [Available on 04/01/17].
    48. Fahrmann JF, Grapov D, DeFelice BC, Taylor S, Kim K, Kelly K, Wikoff WR, Pass H, Rom WN, Fiehn O, Miyamoto S. Serum phosphatidylethanolamine levels distinguish benign from malignant solitary pulmonary nodules and represent a potential diagnostic biomarker for lung cancer. Cancer Biomark. 2016 Mar 11; 16(4):609-17. PMID: 27002763.
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    49. Ma Y, Tanaka N, Vaniya A, Kind T, Fiehn O. Ultrafast Polyphenol Metabolomics of Red Wines Using MicroLC-MS/MS. J Agric Food Chem. 2016 Jan 20; 64(2):505-12. PMID: 26698107.
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    50. Cajka T, Fiehn O. Toward Merging Untargeted and Targeted Methods in Mass Spectrometry-Based Metabolomics and Lipidomics. Anal Chem. 2016 Jan 05; 88(1):524-45. PMID: 26637011.
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    51. Sperber H, Mathieu J, Wang Y, Ferreccio A, Hesson J, Xu Z, Fischer KA, Devi A, Detraux D, Gu H, Battle SL, Showalter M, Valensisi C, Bielas JH, Ericson NG, Margaretha L, Robitaille AM, Margineantu D, Fiehn O, Hockenbery D, Blau CA, Raftery D, Margolin AA, Hawkins RD, Moon RT, Ware CB, Ruohola-Baker H. The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition. Nat Cell Biol. 2015 Dec; 17(12):1523-35. PMID: 26571212; PMCID: PMC4662931.
    52. Ma Y, Kind T, Vaniya A, Gennity I, Fahrmann JF, Fiehn O. An in silico MS/MS library for automatic annotation of novel FAHFA lipids. J Cheminform. 2015; 7:53. PMID: 26579213; PMCID: PMC4646931.
    53. Yang D, Song D, Kind T, Ma Y, Hoefkens J, Fiehn O. Lipidomic Analysis of Chlamydomonas reinhardtii under Nitrogen and Sulfur Deprivation. PLoS One. 2015; 10(9):e0137948. PMID: 26375463; PMCID: PMC4574153.
    54. Jeffryes JG, Colastani RL, Elbadawi-Sidhu M, Kind T, Niehaus TD, Broadbelt LJ, Hanson AD, Fiehn O, Tyo KE, Henry CS. MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics. J Cheminform. 2015; 7:44. PMID: 26322134.
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    55. Fahrmann JF, Kim K, DeFelice BC, Taylor SL, Gandara DR, Yoneda KY, Cooke DT, Fiehn O, Kelly K, Miyamoto S. Investigation of metabolomic blood biomarkers for detection of adenocarcinoma lung cancer. Cancer Epidemiol Biomarkers Prev. 2015 Nov; 24(11):1716-23. PMID: 26282632; PMCID: PMC4633344 [Available on 11/01/16].
    56. Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG. Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods. J Chromatogr A. 2015 Sep 18; 1412:43-51. PMID: 26292625; PMCID: PMC4556278.
    57. Vaniya A, Fiehn O. Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics. Trends Analyt Chem. 2015 Jun 01; 69:52-61. PMID: 26213431.
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    58. Meissen JK, Hirahatake KM, Adams SH, Fiehn O. Temporal metabolomic responses of cultured HepG2 liver cells to high fructose and high glucose exposures. Metabolomics. 2015 Jun 01; 11(3):707-721. PMID: 26190955.
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    59. Tsugawa H, Cajka T, Kind T, Ma Y, Higgins B, Ikeda K, Kanazawa M, VanderGheynst J, Fiehn O, Arita M. MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. Nat Methods. 2015 Jun; 12(6):523-6. PMID: 25938372; PMCID: PMC4449330.
    60. Miyamoto S, Taylor SL, Barupal DK, Taguchi A, Wohlgemuth G, Wikoff WR, Yoneda KY, Gandara DR, Hanash SM, Kim K, Fiehn O. Systemic Metabolomic Changes in Blood Samples of Lung Cancer Patients Identified by Gas Chromatography Time-of-Flight Mass Spectrometry. Metabolites. 2015 Apr 09; 5(2):192-210. PMID: 25859693; PMCID: PMC4495369.
    61. Grapov D, Wanichthanarak K, Fiehn O. MetaMapR: pathway independent metabolomic network analysis incorporating unknowns. Bioinformatics. 2015 Aug 15; 31(16):2757-60. PMID: 25847005; PMCID: PMC4528626.
    62. Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY. Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network. Plant Physiol. 2015 Apr; 167(4):1685-98. PMID: 25670818; PMCID: PMC4378150.
    63. Wikoff WR, Grapov D, Fahrmann JF, DeFelice B, Rom WN, Pass HI, Kim K, Nguyen U, Taylor SL, Gandara DR, Kelly K, Fiehn O, Miyamoto S. Metabolomic markers of altered nucleotide metabolism in early stage adenocarcinoma. Cancer Prev Res (Phila). 2015 May; 8(5):410-8. PMID: 25657018; PMCID: PMC4618700.
    64. Piccolo BD, Keim NL, Fiehn O, Adams SH, Van Loan MD, Newman JW. Habitual physical activity and plasma metabolomic patterns distinguish individuals with low vs. high weight loss during controlled energy restriction. J Nutr. 2015 Apr; 145(4):681-90. PMID: 25833772; PMCID: PMC4381764.
    65. Ma Y, Chassy AW, Miyazaki S, Motokawa M, Morisato K, Uzu H, Ohira M, Furuno M, Nakanishi K, Minakuchi H, Mriziq K, Farkas T, Fiehn O, Tanaka N. Efficiency of short, small-diameter columns for reversed-phase liquid chromatography under practical operating conditions. J Chromatogr A. 2015 Feb 27; 1383:47-57. PMID: 25648581.
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    66. Sumner LW, Styczynski M, McLean J, Fiehn O, Jander G, Liao J, Sumner S, Britz-McKibbin P, Welti R, Jones AD, Dorrestein PC, Bearden D, Kaddurah-Daouk R. Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET). Metabolomics. 2015 Feb; 11(1):3-5. PMID: 28018159.
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    67. Kind T, Okazaki Y, Saito K, Fiehn O. LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries. Anal Chem. 2014 Nov 18; 86(22):11024-7. PMID: 25340521; PMCID: PMC4238643.
    68. Ma Y, Kind T, Yang D, Leon C, Fiehn O. MS2Analyzer: A software for small molecule substructure annotations from accurate tandem mass spectra. Anal Chem. 2014 Nov 04; 86(21):10724-31. PMID: 25263576; PMCID: PMC4222628.
    69. Cajka T, Fiehn O. Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry. Trends Analyt Chem. 2014 Oct 01; 61:192-206. PMID: 25309011.
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    70. Fiehn O, Kim J. Metabolomics insights into pathophysiological mechanisms of interstitial cystitis. Int Neurourol J. 2014 Sep; 18(3):106-14. PMID: 25279237; PMCID: PMC4180160.
    71. Lee DY, Kind T, Yoon YR, Fiehn O, Liu KH. Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma. Anal Bioanal Chem. 2014 Nov; 406(28):7275-86. PMID: 25171832.
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    72. Wu J, Fiehn O, Armstrong AW. Metabolomic analysis using porcine skin: a pilot study of analytical techniques. Dermatol Online J. 2014 Jun 15; 20(6). PMID: 24945638.
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    73. Ogawa T, Furuhashi T, Okazawa A, Nakai R, Nakazawa M, Kind T, Fiehn O, Kanaya S, Arita M, Ohta D. Exploration of polar lipid accumulation profiles in Euglena gracilis using LipidBlast, an MS/MS spectral library constructed in silico. Biosci Biotechnol Biochem. 2014; 78(1):14-8. PMID: 25036478.
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    74. Cooper-Dehoff RM, Hou W, Weng L, Baillie RA, Beitelshees AL, Gong Y, Shahin MH, Turner ST, Chapman A, Gums JG, Boyle SH, Zhu H, Wikoff WR, Boerwinkle E, Fiehn O, Frye RF, Kaddurah-Daouk R, Johnson JA. Is diabetes mellitus-linked amino acid signature associated with ß-blocker-induced impaired fasting glucose? Circ Cardiovasc Genet. 2014 Apr; 7(2):199-205. PMID: 24627569; PMCID: PMC4050976.
    75. Budczies J, Brockmöller SF, Müller BM, Barupal DK, Richter-Ehrenstein C, Kleine-Tebbe A, Griffin JL, Orešic M, Dietel M, Denkert C, Fiehn O. Comparative metabolomics of estrogen receptor positive and estrogen receptor negative breast cancer: alterations in glutamine and beta-alanine metabolism. J Proteomics. 2013 Dec 06; 94:279-88. PMID: 24125731.
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    76. Perroud B, Jafar-Nejad P, Wikoff WR, Gatchel JR, Wang L, Barupal DK, Crespo-Barreto J, Fiehn O, Zoghbi HY, Kaddurah-Daouk R. Pharmacometabolomic signature of ataxia SCA1 mouse model and lithium effects. PLoS One. 2013; 8(8):e70610. PMID: 23936457; PMCID: PMC3732229.
    77. Zhu H, Bogdanov MB, Boyle SH, Matson W, Sharma S, Matson S, Churchill E, Fiehn O, Rush JA, Krishnan RR, Pickering E, Delnomdedieu M, Kaddurah-Daouk R. Pharmacometabolomics of response to sertraline and to placebo in major depressive disorder - possible role for methoxyindole pathway. PLoS One. 2013; 8(7):e68283. PMID: 23874572; PMCID: PMC3714282.
    78. Kind T, Liu KH, Lee DY, DeFelice B, Meissen JK, Fiehn O. LipidBlast in silico tandem mass spectrometry database for lipid identification. Nat Methods. 2013 Aug; 10(8):755-8. PMID: 23817071; PMCID: PMC3731409.
    79. Motsinger-Reif AA, Zhu H, Kling MA, Matson W, Sharma S, Fiehn O, Reif DM, Appleby DH, Doraiswamy PM, Trojanowski JQ, Kaddurah-Daouk R, Arnold SE. Comparing metabolomic and pathologic biomarkers alone and in combination for discriminating Alzheimer's disease from normal cognitive aging. Acta Neuropathol Commun. 2013 Jun 27; 1:28. PMID: 24252434; PMCID: PMC3893491.
    80. Ibáñez C, Simó C, Barupal DK, Fiehn O, Kivipelto M, Cedazo-Mínguez A, Cifuentes A. A new metabolomic workflow for early detection of Alzheimer's disease. J Chromatogr A. 2013 Aug 09; 1302:65-71. PMID: 23827464.
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    81. Sudre D, Gutierrez-Carbonell E, Lattanzio G, Rellán-Álvarez R, Gaymard F, Wohlgemuth G, Fiehn O, Alvarez-Fernández A, Zamarreño AM, Bacaicoa E, Duy D, García-Mina JM, Abadía J, Philippar K, López-Millán AF, Briat JF. Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an Arabidopsis ferritin mutant. J Exp Bot. 2013 Jul; 64(10):2665-88. PMID: 23682113; PMCID: PMC3697946.
    82. Wikoff WR, Frye RF, Zhu H, Gong Y, Boyle S, Churchill E, Cooper-Dehoff RM, Beitelshees AL, Chapman AB, Fiehn O, Johnson JA, Kaddurah-Daouk R. Pharmacometabolomics reveals racial differences in response to atenolol treatment. PLoS One. 2013; 8(3):e57639. PMID: 23536766; PMCID: PMC3594230.
    83. Kim S, Lee DY, Wohlgemuth G, Park HS, Fiehn O, Kim KH. Evaluation and optimization of metabolome sample preparation methods for Saccharomyces cerevisiae. Anal Chem. 2013 Feb 19; 85(4):2169-76. PMID: 23289506.
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    84. Lee DY, Fiehn O. Metabolomic response of Chlamydomonas reinhardtii to the inhibition of target of rapamycin (TOR) by rapamycin. J Microbiol Biotechnol. 2013; 23(7):923-31. PMID: 23727803.
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    85. Botanga CJ, Bethke G, Chen Z, Gallie DR, Fiehn O, Glazebrook J. Metabolite profiling of Arabidopsis inoculated with Alternaria brassicicola reveals that ascorbate reduces disease severity. Mol Plant Microbe Interact. 2012 Dec; 25(12):1628-38. PMID: 23134520.
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    86. Meissen JK, Yuen BT, Kind T, Riggs JW, Barupal DK, Knoepfler PS, Fiehn O. Induced pluripotent stem cells show metabolomic differences to embryonic stem cells in polyunsaturated phosphatidylcholines and primary metabolism. PLoS One. 2012; 7(10):e46770. PMID: 23077522; PMCID: PMC3471894.
    87. Budczies J, Denkert C, Müller BM, Brockmöller SF, Klauschen F, Györffy B, Dietel M, Richter-Ehrenstein C, Marten U, Salek RM, Griffin JL, Hilvo M, Orešic M, Wohlgemuth G, Fiehn O. Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study. BMC Genomics. 2012 Jul 23; 13:334. PMID: 22823888; PMCID: PMC3430598.
    88. Lee DY, Park JJ, Barupal DK, Fiehn O. System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium. Mol Cell Proteomics. 2012 Oct; 11(10):973-88. PMID: 22787274; PMCID: PMC3494149.
    89. Trupp M, Zhu H, Wikoff WR, Baillie RA, Zeng ZB, Karp PD, Fiehn O, Krauss RM, Kaddurah-Daouk R. Metabolomics reveals amino acids contribute to variation in response to simvastatin treatment. PLoS One. 2012; 7(7):e38386. PMID: 22808006; PMCID: PMC3392268.
    90. Meyer RC, Witucka-Wall H, Becher M, Blacha A, Boudichevskaia A, Dörmann P, Fiehn O, Friedel S, von Korff M, Lisec J, Melzer M, Repsilber D, Schmidt R, Scholz M, Selbig J, Willmitzer L, Altmann T. Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. Plant J. 2012 Aug; 71(4):669-83. PMID: 22487254.
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    91. Ho PP, Kanter JL, Johnson AM, Srinagesh HK, Chang EJ, Purdy TM, van Haren K, Wikoff WR, Kind T, Khademi M, Matloff LY, Narayana S, Hur EM, Lindstrom TM, He Z, Fiehn O, Olsson T, Han X, Han MH, Steinman L, Robinson WH. Identification of naturally occurring fatty acids of the myelin sheath that resolve neuroinflammation. Sci Transl Med. 2012 Jun 06; 4(137):137ra73. PMID: 22674551; PMCID: PMC3953135.
    92. Barupal DK, Haldiya PK, Wohlgemuth G, Kind T, Kothari SL, Pinkerton KE, Fiehn O. MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity. BMC Bioinformatics. 2012 May 16; 13:99. PMID: 22591066; PMCID: PMC3495401.
    93. Song IS, Lee DY, Shin MH, Kim H, Ahn YG, Park I, Kim KH, Kind T, Shin JG, Fiehn O, Liu KH. Pharmacogenetics meets metabolomics: discovery of tryptophan as a new endogenous OCT2 substrate related to metformin disposition. PLoS One. 2012; 7(5):e36637. PMID: 22590580; PMCID: PMC3348126.
    94. Kind T, Meissen JK, Yang D, Nocito F, Vaniya A, Cheng YS, Vandergheynst JS, Fiehn O. Qualitative analysis of algal secretions with multiple mass spectrometric platforms. J Chromatogr A. 2012 Jun 29; 1244:139-47. PMID: 22608776; PMCID: PMC3746802.
    95. Denkert C, Bucher E, Hilvo M, Salek R, Orešic M, Griffin J, Brockmöller S, Klauschen F, Loibl S, Barupal DK, Budczies J, Iljin K, Nekljudova V, Fiehn O. Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery. Genome Med. 2012 Apr 30; 4(4):37. PMID: 22546809; PMCID: PMC3446265.
    96. Abo R, Hebbring S, Ji Y, Zhu H, Zeng ZB, Batzler A, Jenkins GD, Biernacka J, Snyder K, Drews M, Fiehn O, Fridley B, Schaid D, Kamatani N, Nakamura Y, Kubo M, Mushiroda T, Kaddurah-Daouk R, Mrazek DA, Weinshilboum RM. Merging pharmacometabolomics with pharmacogenomics using '1000 Genomes' single-nucleotide polymorphism imputation: selective serotonin reuptake inhibitor response pharmacogenomics. Pharmacogenet Genomics. 2012 Apr; 22(4):247-53. PMID: 22322242; PMCID: PMC3303952.
    97. Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ. Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Front Plant Sci. 2012; 3:15. PMID: 22645570; PMCID: PMC3355754.
    98. Brosnan RJ, Steffey EP, Escobar A, Palazoglu M, Fiehn O. Anesthetic induction with guaifenesin and propofol in adult horses. Am J Vet Res. 2011 Dec; 72(12):1569-75. PMID: 22126682.
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    99. Rellán-Álvarez R, El-Jendoubi H, Wohlgemuth G, Abadía A, Fiehn O, Abadía J, Alvarez-Fernández A. Metabolite profile changes in xylem sap and leaf extracts of strategy I plants in response to iron deficiency and resupply. Front Plant Sci. 2011; 2:66. PMID: 22645546; PMCID: PMC3355808.
    100. Skogerson K, Wohlgemuth G, Barupal DK, Fiehn O. The volatile compound BinBase mass spectral database. BMC Bioinformatics. 2011 Aug 04; 12:321. PMID: 21816034; PMCID: PMC3199763.
    101. Kumari S, Stevens D, Kind T, Denkert C, Fiehn O. Applying in-silico retention index and mass spectra matching for identification of unknown metabolites in accurate mass GC-TOF mass spectrometry. Anal Chem. 2011 Aug 01; 83(15):5895-902. PMID: 21678983.
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    102. Fiehn O, Barupal DK, Kind T. Extending biochemical databases by metabolomic surveys. J Biol Chem. 2011 Jul 08; 286(27):23637-43. PMID: 21566124; PMCID: PMC3129143.
    103. Wu D, Nishimura N, Kuo V, Fiehn O, Shahbaz S, Van Winkle L, Matsumura F, Vogel CF. Activation of aryl hydrocarbon receptor induces vascular inflammation and promotes atherosclerosis in apolipoprotein E-/- mice. Arterioscler Thromb Vasc Biol. 2011 Jun; 31(6):1260-7. PMID: 21441140; PMCID: PMC3098318.
    104. Buckendahl AC, Budczies J, Fiehn O, Darb-Esfahani S, Kind T, Noske A, Weichert W, Sehouli J, Braicu E, Dietel M, Denkert C. Prognostic impact of AMP-activated protein kinase expression in ovarian carcinoma: correlation of protein expression and GC/TOF-MS-based metabolomics. Oncol Rep. 2011 Apr; 25(4):1005-12. PMID: 21271224.
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    105. Fiehn O, Garvey WT, Newman JW, Lok KH, Hoppel CL, Adams SH. Plasma metabolomic profiles reflective of glucose homeostasis in non-diabetic and type 2 diabetic obese African-American women. PLoS One. 2010 Dec 10; 5(12):e15234. PMID: 21170321; PMCID: PMC3000813.
    106. Reichenbach SE, Tian X, Tao Q, Ledford EB, Wu Z, Fiehn O. Informatics for cross-sample analysis with comprehensive two-dimensional gas chromatography and high-resolution mass spectrometry (GCxGC-HRMS). Talanta. 2011 Jan 30; 83(4):1279-88. PMID: 21215864.
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    107. Wohlgemuth G, Haldiya PK, Willighagen E, Kind T, Fiehn O. The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports. Bioinformatics. 2010 Oct 15; 26(20):2647-8. PMID: 20829444; PMCID: PMC2951090.
    108. Kind T, Fiehn O. Advances in structure elucidation of small molecules using mass spectrometry. Bioanal Rev. 2010 Dec; 2(1-4):23-60. PMID: 21289855.
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    109. Shin MH, Lee DY, Liu KH, Fiehn O, Kim KH. Evaluation of sampling and extraction methodologies for the global metabolic profiling of Saccharophagus degradans. Anal Chem. 2010 Aug 01; 82(15):6660-6. PMID: 20669998.
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    110. Rellán-Alvarez R, Andaluz S, Rodríguez-Celma J, Wohlgemuth G, Zocchi G, Alvarez-Fernández A, Fiehn O, López-Millán AF, Abadía J. Changes in the proteomic and metabolic profiles of Beta vulgaris root tips in response to iron deficiency and resupply. BMC Plant Biol. 2010 Jun 21; 10:120. PMID: 20565974; PMCID: PMC3017792.
    111. Sana TR, Fischer S, Wohlgemuth G, Katrekar A, Jung KH, Ronald PC, Fiehn O. Metabolomic and transcriptomic analysis of the rice response to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae. Metabolomics. 2010 Sep; 6(3):451-465. PMID: 20676379.
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    112. Barupal DK, Kind T, Kothari SL, Lee DY, Fiehn O. Hydrocarbon phenotyping of algal species using pyrolysis-gas chromatography mass spectrometry. BMC Biotechnol. 2010 May 21; 10:40. PMID: 20492649; PMCID: PMC2883956.
    113. Abate S, Ahn YG, Kind T, Cataldi TR, Fiehn O. Determination of elemental compositions by gas chromatography/time-of-flight mass spectrometry using chemical and electron ionization. Rapid Commun Mass Spectrom. 2010 Apr 30; 24(8):1172-80. PMID: 20301109.
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    114. Seifert EL, Fiehn O, Bezaire V, Bickel DR, Wohlgemuth G, Adams SH, Harper ME. Long-chain fatty acid combustion rate is associated with unique metabolite profiles in skeletal muscle mitochondria. PLoS One. 2010 Mar 24; 5(3):e9834. PMID: 20352092; PMCID: PMC2844415.
    115. Shin MH, Lee DY, Wohlgemuth G, Choi IG, Fiehn O, Kim KH. Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40. N Biotechnol. 2010 May 31; 27(2):156-68. PMID: 20215059.
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    116. Shin MH, Lee DY, Skogerson K, Wohlgemuth G, Choi IG, Fiehn O, Kim KH. Global metabolic profiling of plant cell wall polysaccharide degradation by Saccharophagus degradans. Biotechnol Bioeng. 2010 Feb 15; 105(3):477-88. PMID: 19806675.
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    117. Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, Sumner LW, Welti R, Nikolau BJ, Rhee SY, Dickerson JA. PlantMetabolomics.org: a web portal for plant metabolomics experiments. Plant Physiol. 2010 Apr; 152(4):1807-16. PMID: 20147492; PMCID: PMC2850039.
    118. Taylor SL, Ganti S, Bukanov NO, Chapman A, Fiehn O, Osier M, Kim K, Weiss RH. A metabolomics approach using juvenile cystic mice to identify urinary biomarkers and altered pathways in polycystic kidney disease. Am J Physiol Renal Physiol. 2010 Apr; 298(4):F909-22. PMID: 20130118; PMCID: PMC2853321.
    119. Dandekar AM, Martinelli F, Davis CE, Bhushan A, Zhao W, Fiehn O, Skogerson K, Wohlgemuth G, D'Souza R, Roy S, Reagan RL, Lin D, Cary R, Pardington P, Gupta G. Analysis of early host responses for asymptomatic disease detection and management of specialty crops. Crit Rev Immunol. 2010; 30(3):277-89. PMID: 20370635.
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    120. Kind T, Wohlgemuth G, Lee DY, Lu Y, Palazoglu M, Shahbaz S, Fiehn O. FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry. Anal Chem. 2009 Dec 15; 81(24):10038-48. PMID: 19928838.
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    121. Kind T, Fiehn O. What are the obstacles for an integrated system for comprehensive interpretation of cross-platform metabolic profile data? Bioanalysis. 2009 Dec; 1(9):1511-4. PMID: 21083097.
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    123. Matsuda F, Shinbo Y, Oikawa A, Hirai MY, Fiehn O, Kanaya S, Saito K. Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches. PLoS One. 2009 Oct 16; 4(10):e7490. PMID: 19847304; PMCID: PMC2761541.
    124. Hartman AL, Lough DM, Barupal DK, Fiehn O, Fishbein T, Zasloff M, Eisen JA. Human gut microbiome adopts an alternative state following small bowel transplantation. Proc Natl Acad Sci U S A. 2009 Oct 06; 106(40):17187-92. PMID: 19805153; PMCID: PMC2746123.
    125. Martinelli F, Uratsu SL, Reagan RL, Chen Y, Tricoli D, Fiehn O, Rocke DM, Gasser CS, Dandekar AM. Gene regulation in parthenocarpic tomato fruit. J Exp Bot. 2009; 60(13):3873-90. PMID: 19700496; PMCID: PMC2736898.
    126. Skogerson K, Runnebaum R, Wohlgemuth G, de Ropp J, Heymann H, Fiehn O. Comparison of gas chromatography-coupled time-of-flight mass spectrometry and 1H nuclear magnetic resonance spectroscopy metabolite identification in white wines from a sensory study investigating wine body. J Agric Food Chem. 2009 Aug 12; 57(15):6899-907. PMID: 19588931.
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    127. Scalbert A, Brennan L, Fiehn O, Hankemeier T, Kristal BS, van Ommen B, Pujos-Guillot E, Verheij E, Wishart D, Wopereis S. Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research. Metabolomics. 2009 Dec; 5(4):435-458. PMID: 20046865.
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    128. Kind T, Scholz M, Fiehn O. How large is the metabolome? A critical analysis of data exchange practices in chemistry. PLoS One. 2009; 4(5):e5440. PMID: 19415114.
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    129. Denkert C, Budczies J, Weichert W, Wohlgemuth G, Scholz M, Kind T, Niesporek S, Noske A, Buckendahl A, Dietel M, Fiehn O. Metabolite profiling of human colon carcinoma--deregulation of TCA cycle and amino acid turnover. Mol Cancer. 2008 Sep 18; 7:72. PMID: 18799019; PMCID: PMC2569965.
    130. Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hancock JM, Hardy NW, Hermjakob H, Julian RK, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Le Novère N, Leebens-Mack J, Lewis SE, Lord P, Mallon AM, Marthandan N, Masuya H, McNally R, Mehrle A, Morrison N, Orchard S, Quackenbush J, Reecy JM, Robertson DG, Rocca-Serra P, Rodriguez H, Rosenfelder H, Santoyo-Lopez J, Scheuermann RH, Schober D, Smith B, Snape J, Stoeckert CJ, Tipton K, Sterk P, Untergasser A, Vandesompele J, Wiemann S. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol. 2008 Aug; 26(8):889-96. PMID: 18688244; PMCID: PMC2771753.
    131. Lee DY, Fiehn O. High quality metabolomic data for Chlamydomonas reinhardtii. Plant Methods. 2008 Apr 28; 4:7. PMID: 18442406; PMCID: PMC2377246.
    132. Fiehn O. Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry. Trends Analyt Chem. 2008 Mar; 27(3):261-269. PMID: 18497891.
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    133. Fiehn O, Wohlgemuth G, Scholz M, Kind T, Lee DY, Lu Y, Moon S, Nikolau B. Quality control for plant metabolomics: reporting MSI-compliant studies. Plant J. 2008 Feb; 53(4):691-704. PMID: 18269577.
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    134. Lisec J, Meyer RC, Steinfath M, Redestig H, Becher M, Witucka-Wall H, Fiehn O, Törjék O, Selbig J, Altmann T, Willmitzer L. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J. 2008 Mar; 53(6):960-72. PMID: 18047556; PMCID: PMC2268983.
    135. Sumner LW, Amberg A, Barrett D, Beale MH, Beger R, Daykin CA, Fan TW, Fiehn O, Goodacre R, Griffin JL, Hankemeier T, Hardy N, Harnly J, Higashi R, Kopka J, Lane AN, Lindon JC, Marriott P, Nicholls AW, Reily MD, Thaden JJ, Viant MR. Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics. 2007 Sep; 3(3):211-221. PMID: 24039616.
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    136. Kind T, Fiehn O. Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinformatics. 2007 Mar 27; 8:105. PMID: 17389044; PMCID: PMC1851972.
    137. Kind T, Tolstikov V, Fiehn O, Weiss RH. A comprehensive urinary metabolomic approach for identifying kidney cancerr. Anal Biochem. 2007 Apr 15; 363(2):185-95. PMID: 17316536.
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    138. Tolstikov VV, Fiehn O, Tanaka N. Application of liquid chromatography-mass spectrometry analysis in metabolomics: reversed-phase monolithic capillary chromatography and hydrophilic chromatography coupled to electrospray ionization-mass spectrometry. Methods Mol Biol. 2007; 358:141-55. PMID: 17035685.
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    139. Scholz M, Fiehn O. SetupX--a public study design database for metabolomic projects. Pac Symp Biocomput. 2007; 169-80. PMID: 17990490.
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    140. Fiehn O, Kind T. Metabolite profiling in blood plasma. Methods Mol Biol. 2007; 358:3-17. PMID: 17035677.
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    141. Perroud B, Lee J, Valkova N, Dhirapong A, Lin PY, Fiehn O, Kültz D, Weiss RH. Pathway analysis of kidney cancer using proteomics and metabolic profiling. Mol Cancer. 2006 Nov 24; 5:64. PMID: 17123452; PMCID: PMC1665458.
    142. Denkert C, Budczies J, Kind T, Weichert W, Tablack P, Sehouli J, Niesporek S, Könsgen D, Dietel M, Fiehn O. Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors. Cancer Res. 2006 Nov 15; 66(22):10795-804. PMID: 17108116.
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    143. Kind T, Fiehn O. Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics. 2006 Apr 28; 7:234. PMID: 16646969; PMCID: PMC1464138.
    144. Castle AL, Fiehn O, Kaddurah-Daouk R, Lindon JC. Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results. Brief Bioinform. 2006 Jun; 7(2):159-65. PMID: 16772263.
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    145. Fiehn O, Kristal B, van Ommen B, Sumner LW, Sansone SA, Taylor C, Hardy N, Kaddurah-Daouk R. Establishing reporting standards for metabolomic and metabonomic studies: a call for participation. OMICS. 2006; 10(2):158-63. PMID: 16901221.
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    146. Catchpole GS, Beckmann M, Enot DP, Mondhe M, Zywicki B, Taylor J, Hardy N, Smith A, King RD, Kell DB, Fiehn O, Draper J. Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc Natl Acad Sci U S A. 2005 Oct 04; 102(40):14458-62. PMID: 16186495; PMCID: PMC1242293.
    147. Shellie RA, Welthagen W, Zrostliková J, Spranger J, Ristow M, Fiehn O, Zimmermann R. Statistical methods for comparing comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry results: metabolomic analysis of mouse tissue extracts. J Chromatogr A. 2005 Sep 09; 1086(1-2):83-90. PMID: 16130658.
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    148. Schad M, Mungur R, Fiehn O, Kehr J. Metabolic profiling of laser microdissected vascular bundles of Arabidopsis thaliana. Plant Methods. 2005 Aug 18; 1(1):2. PMID: 16270917; PMCID: PMC1266046.
    149. Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, Kopka J, Lane GA, Lange BM, Liu JR, Mendes P, Nikolau BJ, Oliver SG, Paton NW, Rhee S, Roessner-Tunali U, Saito K, Smedsgaard J, Sumner LW, Wang T, Walsh S, Wurtele ES, Kell DB. A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol. 2004 Dec; 22(12):1601-6. PMID: 15583675.
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    150. Bino RJ, Hall RD, Fiehn O, Kopka J, Saito K, Draper J, Nikolau BJ, Mendes P, Roessner-Tunali U, Beale MH, Trethewey RN, Lange BM, Wurtele ES, Sumner LW. Potential of metabolomics as a functional genomics tool. Trends Plant Sci. 2004 Sep; 9(9):418-25. PMID: 15337491.
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    151. Wienkoop S, Glinski M, Tanaka N, Tolstikov V, Fiehn O, Weckwerth W. Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. Rapid Commun Mass Spectrom. 2004; 18(6):643-50. PMID: 15052571.
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    152. Hall R, Beale M, Fiehn O, Hardy N, Sumner L, Bino R. Plant metabolomics: the missing link in functional genomics strategies. Plant Cell. 2002 Jul; 14(7):1437-40. PMID: 12119365; PMCID: PMC543394.
    153. Fiehn O. Metabolomics--the link between genotypes and phenotypes. Plant Mol Biol. 2002 Jan; 48(1-2):155-71. PMID: 11860207.
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    154. Taylor J, King RD, Altmann T, Fiehn O. Application of metabolomics to plant genotype discrimination using statistics and machine learning. Bioinformatics. 2002; 18 Suppl 2:S241-8. PMID: 12386008.
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