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Carlito Lebrilla

TitlePROF-AY
InstitutionUniversity of California Davis
DepartmentChemistry
Address2465 Chemistry Annex
CA 95616
Phone530-752-6364
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Wong M, Xu G, Park D, Barboza M, Lebrilla C. Intact glycosphingolipidomic analysis of the cell membrane during differentiation yields extensive glycan and lipid changes. Sci Rep. 2018 Jul 20; 8(1):10993. PMID: 30030471.
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    2. Awan B, Turkov D, Schumacher C, Jacobo A, McEnerney A, Ramsey A, Xu G, Park D, Kalomoiris S, Yao W, Jao LE, Allende ML, Lebrilla C, Fierro FA. FGF2 Induces Migration of Human Bone Marrow Stromal Cells by Increasing Core Fucosylations on N-Glycans of Integrins. Stem Cell Reports. 2018 Jun 28. PMID: 29983388.
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    3. Sukenik SC, Karuppanan K, Li Q, Lebrilla C, Nandi S, McDonald KA. Transient Recombinant Protein Production in Glycoengineered Nicotiana benthamiana Cell Suspension Culture. Int J Mol Sci. 2018 Apr 16; 19(4). PMID: 29659495.
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    4. Ruhaak LR, Xu G, Li Q, Goonatilleke E, Lebrilla C. Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses. Chem Rev. 2018 Mar 19. PMID: 29553244.
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    5. Xiong Y, Li Q, Kailemia MJ, Lebrilla C, Nandi S, McDonald KA. Glycoform Modification of Secreted Recombinant Glycoproteins through Kifunensine Addition during Transient Vacuum Agroinfiltration. Int J Mol Sci. 2018 Mar 17; 19(3). PMID: 29562594.
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    6. Bronner DN, Faber F, Olsan EE, Byndloss MX, Sayed NA, Xu G, Yoo W, Kim D, Ryu S, Lebrilla C, Bäumler AJ. Genetic Ablation of Butyrate Utilization Attenuates Gastrointestinal Salmonella Disease. Cell Host Microbe. 2018 Feb 14; 23(2):266-273.e4. PMID: 29447698.
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    7. Ng BG, Xu G, Chandy N, Steyermark J, Shinde DN, Radtke K, Raymond K, Lebrilla C, AlAsmari A, Suchy SF, Powis Z, Faqeih EA, Berry SA, Kronn DF, Freeze HH. Biallelic Mutations in FUT8 Cause a Congenital Disorder of Glycosylation with Defective Fucosylation. Am J Hum Genet. 2018 Jan 04; 102(1):188-195. PMID: 29304374.
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    8. Kailemia MJ, Wei W, Nguyen K, Beals E, Sawrey-Kubicek L, Rhodes C, Zhu C, Sacchi R, Zivkovic AM, Lebrilla C. Targeted Measurements of O- and N-Glycopeptides Show That Proteins in High Density Lipoprotein Particles Are Enriched with Specific Glycosylation Compared to Plasma. J Proteome Res. 2018 02 02; 17(2):834-845. PMID: 29212317.
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    9. Miyamoto S, Stroble CD, Taylor S, Hong Q, Lebrilla C, Leiserowitz GS, Kim K, Ruhaak LR. Multiple Reaction Monitoring for the Quantitation of Serum Protein Glycosylation Profiles: Application to Ovarian Cancer. J Proteome Res. 2018 01 05; 17(1):222-233. PMID: 29207246.
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    10. Xu G, Amicucci MJ, Cheng Z, Galermo AG, Lebrilla C. Revisiting monosaccharide analysis - quantitation of a comprehensive set of monosaccharides using dynamic multiple reaction monitoring. Analyst. 2017 Dec 18; 143(1):200-207. PMID: 29186215.
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    11. Frese SA, Hutton AA, Contreras LN, Shaw CA, Palumbo MC, Casaburi G, Xu G, Davis JCC, Lebrilla C, Henrick BM, Freeman SL, Barile D, German JB, Mills DA, Smilowitz JT, Underwood MA. Persistence of Supplemented Bifidobacterium longum subsp. infantis EVC001 in Breastfed Infants. mSphere. 2017 Nov-Dec; 2(6). PMID: 29242832.
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    12. Kailemia MJ, Xu G, Wong M, Li Q, Goonatilleke E, Leon F, Lebrilla C. Recent Advances in the Mass Spectrometry Methods for Glycomics and Cancer. Anal Chem. 2018 Jan 02; 90(1):208-224. PMID: 29049885.
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    13. Park D, Xu G, Barboza M, Shah IM, Wong M, Raybould H, Mills DA, Lebrilla C. Enterocyte glycosylation is responsive to changes in extracellular conditions: implications for membrane functions. Glycobiology. 2017 Sep 01; 27(9):847-860. PMID: 28486580.
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    14. Byndloss MX, Olsan EE, Rivera-Chávez F, Tiffany CR, Cevallos SA, Lokken KL, Torres TP, Byndloss AJ, Faber F, Gao Y, Litvak Y, Lopez CA, Xu G, Napoli E, Giulivi C, Tsolis RM, Revzin A, Lebrilla C, Bäumler AJ. Microbiota-activated PPAR-? signaling inhibits dysbiotic Enterobacteriaceae expansion. Science. 2017 08 11; 357(6351):570-575. PMID: 28798125.
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    15. Meredith-Dennis L, Xu G, Goonatilleke E, Lebrilla C, Underwood MA, Smilowitz JT. Composition and Variation of Macronutrients, Immune Proteins, and Human Milk Oligosaccharides in Human Milk From Nonprofit and Commercial Milk Banks. J Hum Lact. 2018 Feb; 34(1):120-129. PMID: 28614672.
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    16. Krishnan S, Shimoda M, Sacchi R, Kailemia MJ, Luxardi G, Kaysen GA, Parikh AN, Ngassam VN, Johansen K, Chertow GM, Grimes B, Smilowitz JT, Maverakis E, Lebrilla C, Zivkovic AM. HDL Glycoprotein Composition and Site-Specific Glycosylation Differentiates Between Clinical Groups and Affects IL-6 Secretion in Lipopolysaccharide-Stimulated Monocytes. Sci Rep. 2017 Mar 13; 7:43728. PMID: 28287093.
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    17. Davis JC, Lewis ZT, Krishnan S, Bernstein RM, Moore SE, Prentice AM, Mills DA, Lebrilla C, Zivkovic AM. Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides and Infant Gut Microbiota. Sci Rep. 2017 Jan 12; 7:40466. PMID: 28079170.
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    18. Karuppanan K, Duhra-Gill S, Kailemia MJ, Phu ML, Lebrilla C, Dandekar AM, Rodriguez RL, Nandi S, McDonald KA. Expression, Purification, and Biophysical Characterization of a Secreted Anthrax Decoy Fusion Protein in Nicotiana benthamiana. Int J Mol Sci. 2017 Jan 04; 18(1). PMID: 28054967.
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    19. Wu LD, Ruhaak LR, Lebrilla C. Analysis of Milk Oligosaccharides by Mass Spectrometry. Methods Mol Biol. 2017; 1503:121-129. PMID: 27743363.
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    20. Wang Y, Park D, Galermo AG, Gao D, Liu H, Lebrilla C. Changes in cellular glycosylation of leukemia cells upon treatment with acridone derivatives yield insight into drug action. Proteomics. 2016 Dec; 16(23):2977-2988. PMID: 27717196.
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    21. Huang J, Kailemia MJ, Goonatilleke E, Parker EA, Hong Q, Sabia R, Smilowitz JT, German JB, Lebrilla C. Quantitation of human milk proteins and their glycoforms using multiple reaction monitoring (MRM). Anal Bioanal Chem. 2017 Jan; 409(2):589-606. PMID: 27796459.
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    22. Garrido D, Ruiz-Moyano S, Kirmiz N, Davis JC, Totten SM, Lemay DG, Ugalde JA, German JB, Lebrilla C, Mills DA. A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596. Sci Rep. 2016 10 19; 6:35045. PMID: 27756904.
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    23. Xu G, Davis JC, Goonatilleke E, Smilowitz JT, German JB, Lebrilla C. Absolute Quantitation of Human Milk Oligosaccharides Reveals Phenotypic Variations during Lactation. J Nutr. 2017 01; 147(1):117-124. PMID: 27798342.
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    24. Park D, Arabyan N, Williams CC, Song T, Mitra A, Weimer BC, Maverakis E, Lebrilla C. Salmonella Typhimurium Enzymatically Landscapes the Host Intestinal Epithelial Cell (IEC) Surface Glycome to Increase Invasion. Mol Cell Proteomics. 2016 Dec; 15(12):3653-3664. PMID: 27754876.
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    25. Kailemia MJ, Park D, Lebrilla C. Glycans and glycoproteins as specific biomarkers for cancer. Anal Bioanal Chem. 2017 Jan; 409(2):395-410. PMID: 27590322.
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    26. Awasthi S, Wilken R, Patel F, German JB, Mills DA, Lebrilla C, Kim K, Freeman SL, Smilowitz JT, Armstrong AW, Maverakis E. Dietary supplementation with Bifidobacterium longum subsp. infantis (B. infantis) in healthy breastfed infants: study protocol for a randomised controlled trial. Trials. 2016 07 22; 17(1):340. PMID: 27449926; PMCID: PMC4957407.
    27. Davis JC, Totten SM, Huang JO, Nagshbandi S, Kirmiz N, Garrido DA, Lewis ZT, Wu LD, Smilowitz JT, German JB, Mills DA, Lebrilla C. Identification of Oligosaccharides in Feces of Breast-fed Infants and Their Correlation with the Gut Microbial Community. Mol Cell Proteomics. 2016 09; 15(9):2987-3002. PMID: 27435585.
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    28. Arabyan N, Park D, Foutouhi S, Weis AM, Huang BC, Williams CC, Desai P, Shah J, Jeannotte R, Kong N, Lebrilla C, Weimer BC. Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling. Sci Rep. 2016 07 08; 6:29525. PMID: 27389966.
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    29. Alkanaimsh S, Karuppanan K, Guerrero A, Tu AM, Hashimoto B, Hwang MS, Phu ML, Arzola L, Lebrilla C, Dandekar AM, Falk BW, Nandi S, Rodriguez RL, McDonald KA. Transient Expression of Tetrameric Recombinant Human Butyrylcholinesterase in Nicotiana benthamiana. Front Plant Sci. 2016; 7:743. PMID: 27379103; PMCID: PMC4909763.
    30. Rivera-Chávez F, Zhang LF, Faber F, Lopez CA, Byndloss MX, Olsan EE, Xu G, Velazquez EM, Lebrilla C, Winter SE, Bäumler AJ. Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella. Cell Host Microbe. 2016 Apr 13; 19(4):443-54. PMID: 27078066; PMCID: PMC4832419 [Available on 04/13/17].
    31. Ruhaak LR, Kim K, Stroble C, Taylor SL, Hong Q, Miyamoto S, Lebrilla C, Leiserowitz G. Protein-Specific Differential Glycosylation of Immunoglobulins in Serum of Ovarian Cancer Patients. J Proteome Res. 2016 Mar 04; 15(3):1002-10. PMID: 26813784.
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    32. Ruhaak LR, Stroble C, Dai J, Barnett M, Taguchi A, Goodman GE, Miyamoto S, Gandara D, Feng Z, Lebrilla C, Hanash S. Serum Glycans as Risk Markers for Non-Small Cell Lung Cancer. Cancer Prev Res (Phila). 2016 Apr; 9(4):317-23. PMID: 26813970; PMCID: PMC4818659 [Available on 04/01/17].
    33. Lewis ZT, Davis JC, Smilowitz JT, German JB, Lebrilla C, Mills DA. The impact of freeze-drying infant fecal samples on measures of their bacterial community profiles and milk-derived oligosaccharide content. PeerJ. 2016; 4:e1612. PMID: 26819854; PMCID: PMC4727960.
    34. Hong Q, Ruhaak LR, Stroble C, Parker E, Huang J, Maverakis E, Lebrilla C. A Method for Comprehensive Glycosite-Mapping and Direct Quantitation of Serum Glycoproteins. J Proteome Res. 2015 Dec 04; 14(12):5179-92. PMID: 26510530; PMCID: PMC4670571 [Available on 12/04/16].
    35. Ruhaak LR, Taylor SL, Stroble C, Nguyen UT, Parker EA, Song T, Lebrilla C, Rom WN, Pass H, Kim K, Kelly K, Miyamoto S. Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue. J Proteome Res. 2015 Nov 06; 14(11):4538-49. PMID: 26322380; PMCID: PMC4644186 [Available on 11/06/16].
    36. Park D, Brune KA, Mitra A, Marusina AI, Maverakis E, Lebrilla C. Characteristic Changes in Cell Surface Glycosylation Accompany Intestinal Epithelial Cell (IEC) Differentiation: High Mannose Structures Dominate the Cell Surface Glycome of Undifferentiated Enterocytes. Mol Cell Proteomics. 2015 Nov; 14(11):2910-21. PMID: 26355101; PMCID: PMC4638035 [Available on 11/01/16].
    37. Underwood MA, Gaerlan S, De Leoz ML, Dimapasoc L, Kalanetra KM, Lemay DG, German JB, Mills DA, Lebrilla C. Human milk oligosaccharides in premature infants: absorption, excretion, and influence on the intestinal microbiota. Pediatr Res. 2015 Dec; 78(6):670-7. PMID: 26322410; PMCID: PMC4689671.
    38. Song T, Aldredge D, Lebrilla C. A Method for In-Depth Structural Annotation of Human Serum Glycans That Yields Biological Variations. Anal Chem. 2015 Aug 04; 87(15):7754-62. PMID: 26086522.
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    39. Guerrero A, Dallas DC, Contreras S, Bhandari A, Cánovas A, Islas-Trejo A, Medrano JF, Parker EA, Wang M, Hettinga K, Chee S, German JB, Barile D, Lebrilla C. Peptidomic analysis of healthy and subclinically mastitic bovine milk. Int Dairy J. 2015 Jul 01; 46:46-52. PMID: 25908898.
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    40. Wang M, Li M, Wu S, Lebrilla C, Chapkin RS, Ivanov I, Donovan SM. Fecal microbiota composition of breast-fed infants is correlated with human milk oligosaccharides consumed. J Pediatr Gastroenterol Nutr. 2015 Jun; 60(6):825-33. PMID: 25651488; PMCID: PMC4441539.
    41. Lewis ZT, Totten SM, Smilowitz JT, Popovic M, Parker E, Lemay DG, Van Tassell ML, Miller MJ, Jin YS, German JB, Lebrilla C, Mills DA. Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants. Microbiome. 2015; 3:13. PMID: 25922665; PMCID: PMC4412032.
    42. Ruhaak LR, Barkauskas DA, Torres J, Cooke CL, Wu LD, Stroble C, Ozcan S, Williams CC, Camorlinga M, Rocke DM, Lebrilla C, Solnick JV. The Serum Immunoglobulin G Glycosylation Signature of Gastric Cancer. EuPA Open Proteom. 2015 Mar 01; 6:1-9. PMID: 25685702.
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    43. Ruhaak LR, Lebrilla C. Applications of Multiple Reaction Monitoring to Clinical Glycomics. Chromatographia. 2015 Mar 01; 78(5-6):335-342. PMID: 25892741.
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    44. Huang J, Guerrero A, Parker E, Strum JS, Smilowitz JT, German JB, Lebrilla C. Site-specific glycosylation of secretory immunoglobulin A from human colostrum. J Proteome Res. 2015 Mar 06; 14(3):1335-49. PMID: 25629924.
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    45. Dallas DC, Guerrero A, Parker EA, Robinson RC, Gan J, German JB, Barile D, Lebrilla C. Current peptidomics: applications, purification, identification, quantification, and functional analysis. Proteomics. 2015 Mar; 15(5-6):1026-38. PMID: 25429922; PMCID: PMC4371869.
    46. Maverakis E, Kim K, Shimoda M, Gershwin ME, Patel F, Wilken R, Raychaudhuri S, Ruhaak LR, Lebrilla C. Glycans in the immune system and The Altered Glycan Theory of Autoimmunity: a critical review. J Autoimmun. 2015 Feb; 57:1-13. PMID: 25578468; PMCID: PMC4340844.
    47. Guerrero A, Lerno L, Barile D, Lebrilla C. Top-down analysis of highly post-translationally modified peptides by Fourier transform ion cyclotron resonance mass spectrometry. J Am Soc Mass Spectrom. 2015 Mar; 26(3):453-9. PMID: 25404158; PMCID: PMC4336581.
    48. Totten SM, Wu LD, Parker EA, Davis JC, Hua S, Stroble C, Ruhaak LR, Smilowitz JT, German JB, Lebrilla C. Rapid-throughput glycomics applied to human milk oligosaccharide profiling for large human studies. Anal Bioanal Chem. 2014 Dec; 406(30):7925-35. PMID: 25358913.
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    49. De Leoz ML, Kalanetra KM, Bokulich NA, Strum JS, Underwood MA, German JB, Mills DA, Lebrilla C. Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study. J Proteome Res. 2015 Jan 02; 14(1):491-502. PMID: 25300177; PMCID: PMC4286166.
    50. Dallas DC, Weinborn V, de Moura Bell JM, Wang M, Parker EA, Guerrero A, Hettinga KA, Lebrilla C, German JB, Barile D. Comprehensive peptidomic and glycomic evaluation reveals that sweet whey permeate from colostrum is a source of milk protein-derived peptides and oligosaccharides. Food Res Int. 2014 Sep 01; 63(Pt B):203-209. PMID: 25284962.
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    51. Guerrero A, Dallas DC, Contreras S, Chee S, Parker EA, Sun X, Dimapasoc L, Barile D, German JB, Lebrilla C. Mechanistic peptidomics: factors that dictate specificity in the formation of endogenous peptides in human milk. Mol Cell Proteomics. 2014 Dec; 13(12):3343-51. PMID: 25172956; PMCID: PMC4256488.
    52. Ruhaak LR, Stroble C, Underwood MA, Lebrilla C. Detection of milk oligosaccharides in plasma of infants. Anal Bioanal Chem. 2014 Sep; 406(24):5775-84. PMID: 25059723; PMCID: PMC4157097.
    53. Song T, Ozcan S, Becker A, Lebrilla C. In-depth method for the characterization of glycosylation in manufactured recombinant monoclonal antibody drugs. Anal Chem. 2014 Jun 17; 86(12):5661-6. PMID: 24828102; PMCID: PMC4066919.
    54. Ozcan S, Kim BJ, Ro G, Kim JH, Bereuter TL, Reiter C, Dimapasoc L, Garrido D, Mills DA, Grimm R, Lebrilla C, An HJ. Glycosylated proteins preserved over millennia: N-glycan analysis of Tyrolean Iceman, Scythian Princess and Warrior. Sci Rep. 2014 May 16; 4:4963. PMID: 24831691; PMCID: PMC4894394.
    55. Kim K, Ruhaak LR, Nguyen UT, Taylor SL, Dimapasoc L, Williams C, Stroble C, Ozcan S, Miyamoto S, Lebrilla C, Leiserowitz GS. Evaluation of glycomic profiling as a diagnostic biomarker for epithelial ovarian cancer. Cancer Epidemiol Biomarkers Prev. 2014 Apr; 23(4):611-21. PMID: 24557531; PMCID: PMC4230493.
    56. Hong Q, Ruhaak LR, Totten SM, Smilowitz JT, German JB, Lebrilla C. Label-free absolute quantitation of oligosaccharides using multiple reaction monitoring. Anal Chem. 2014 Mar 04; 86(5):2640-7. PMID: 24502421; PMCID: PMC3983013.
    57. Huang J, Lee H, Zivkovic AM, Smilowitz JT, Rivera N, German JB, Lebrilla C. Glycomic analysis of high density lipoprotein shows a highly sialylated particle. J Proteome Res. 2014 Feb 07; 13(2):681-91. PMID: 24417605; PMCID: PMC3975653.
    58. Hua S, Saunders M, Dimapasoc LM, Jeong SH, Kim BJ, Kim S, So M, Lee KS, Kim JH, Lam KS, Lebrilla C, An HJ. Differentiation of cancer cell origin and molecular subtype by plasma membrane N-glycan profiling. J Proteome Res. 2014 Feb 07; 13(2):961-8. PMID: 24303873; PMCID: PMC3946297.
    59. Dallas DC, Guerrero A, Parker EA, Garay LA, Bhandari A, Lebrilla C, Barile D, German JB. Peptidomic profile of milk of Holstein cows at peak lactation. J Agric Food Chem. 2014 Jan 08; 62(1):58-65. PMID: 24344900; PMCID: PMC4067477.
    60. Peacock KS, Ruhaak LR, Tsui MK, Mills DA, Lebrilla C. Isomer-specific consumption of galactooligosaccharides by bifidobacterial species. J Agric Food Chem. 2013 Dec 26; 61(51):12612-12619. PMID: 24313277; PMCID: PMC3912189.
    61. Ozcan S, Barkauskas DA, Renee Ruhaak L, Torres J, Cooke CL, An HJ, Hua S, Williams CC, Dimapasoc LM, Han Kim J, Camorlinga-Ponce M, Rocke D, Lebrilla C, Solnick JV. Serum glycan signatures of gastric cancer. Cancer Prev Res (Phila). 2014 Feb; 7(2):226-35. PMID: 24327722.
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    62. Guerrero A, Lebrilla C. New strategies for resolving oligosaccharide isomers by exploiting mechanistic and thermochemical aspects of fragment ion formation. Int J Mass Spectrom. 2013 Nov 15; 354-355. PMID: 24273436.
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    63. Lee H, German JB, Kjelden R, Lebrilla C, Barile D. Quantitative analysis of gangliosides in bovine milk and colostrum-based dairy products by ultrahigh performance liquid chromatography-tandem mass spectrometry. J Agric Food Chem. 2013 Oct 09; 61(40):9689-96. PMID: 24024650.
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    64. Hua S, Hu CY, Kim BJ, Totten SM, Oh MJ, Yun N, Nwosu CC, Yoo JS, Lebrilla C, An HJ. Glyco-analytical multispecific proteolysis (Glyco-AMP): a simple method for detailed and quantitative Glycoproteomic characterization. J Proteome Res. 2013 Oct 04; 12(10):4414-23. PMID: 24016182.
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    65. Smilowitz JT, Totten SM, Huang J, Grapov D, Durham HA, Lammi-Keefe CJ, Lebrilla C, German JB. Human milk secretory immunoglobulin a and lactoferrin N-glycans are altered in women with gestational diabetes mellitus. J Nutr. 2013 Dec; 143(12):1906-12. PMID: 24047700; PMCID: PMC3827637.
    66. Hong Q, Lebrilla C, Miyamoto S, Ruhaak LR. Absolute quantitation of immunoglobulin G and its glycoforms using multiple reaction monitoring. Anal Chem. 2013 Sep 17; 85(18):8585-93. PMID: 23944609; PMCID: PMC3857154.
    67. Ruhaak LR, Nguyen UT, Stroble C, Taylor SL, Taguchi A, Hanash SM, Lebrilla C, Kim K, Miyamoto S. Enrichment strategies in glycomics-based lung cancer biomarker development. Proteomics Clin Appl. 2013 Oct; 7(9-10):664-76. PMID: 23640812; PMCID: PMC3884000.
    68. De Leoz ML, Lebrilla C, Underwood MA. Response to letter to the editor regarding "A quantitative and comprehensive method to analyze human milk oligosaccharide structures in the urine and feces of infants". Anal Bioanal Chem. 2013 Sep; 405(24):7899-900. PMID: 23857139; PMCID: PMC3782869.
    69. Strum JS, Nwosu CC, Hua S, Kronewitter SR, Seipert RR, Bachelor RJ, An HJ, Lebrilla C. Automated assignments of N- and O-site specific glycosylation with extensive glycan heterogeneity of glycoprotein mixtures. Anal Chem. 2013 Jun 18; 85(12):5666-75. PMID: 23662732; PMCID: PMC3692395.
    70. Dallas DC, Guerrero A, Khaldi N, Castillo PA, Martin WF, Smilowitz JT, Bevins CL, Barile D, German JB, Lebrilla C. Extensive in vivo human milk peptidomics reveals specific proteolysis yielding protective antimicrobial peptides. J Proteome Res. 2013 May 03; 12(5):2295-304. PMID: 23586814; PMCID: PMC3662810.
    71. Hua S, Jeong HN, Dimapasoc LM, Kang I, Han C, Choi JS, Lebrilla C, An HJ. Isomer-specific LC/MS and LC/MS/MS profiling of the mouse serum N-glycome revealing a number of novel sialylated N-glycans. Anal Chem. 2013 May 07; 85(9):4636-43. PMID: 23534819.
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    72. Ruhaak LR, Taylor SL, Miyamoto S, Kelly K, Leiserowitz GS, Gandara D, Lebrilla C, Kim K. Chip-based nLC-TOF-MS is a highly stable technology for large-scale high-throughput analyses. Anal Bioanal Chem. 2013 May; 405(14):4953-8. PMID: 23525540; PMCID: PMC3640767.
    73. De Leoz ML, Wu S, Strum JS, Niñonuevo MR, Gaerlan SC, Mirmiran M, German JB, Mills DA, Lebrilla C, Underwood MA. A quantitative and comprehensive method to analyze human milk oligosaccharide structures in the urine and feces of infants. Anal Bioanal Chem. 2013 May; 405(12):4089-105. PMID: 23468138; PMCID: PMC3628279.
    74. Kim JH, An HJ, Garrido D, German JB, Lebrilla C, Mills DA. Proteomic analysis of Bifidobacterium longum subsp. infantis reveals the metabolic insight on consumption of prebiotics and host glycans. PLoS One. 2013; 8(2):e57535. PMID: 23469017; PMCID: PMC3582569.
    75. Aldredge DL, Geronimo MR, Hua S, Nwosu CC, Lebrilla C, Barile D. Annotation and structural elucidation of bovine milk oligosaccharides and determination of novel fucosylated structures. Glycobiology. 2013 Jun; 23(6):664-76. PMID: 23436288; PMCID: PMC3641798.
    76. Ozcan S, An HJ, Vieira AC, Park GW, Kim JH, Mannis MJ, Lebrilla C. Characterization of novel O-glycans isolated from tear and saliva of ocular rosacea patients. J Proteome Res. 2013 Mar 01; 12(3):1090-100. PMID: 23294139; PMCID: PMC3597384.
    77. Ruhaak LR, Miyamoto S, Lebrilla C. Developments in the identification of glycan biomarkers for the detection of cancer. Mol Cell Proteomics. 2013 Apr; 12(4):846-55. PMID: 23365456; PMCID: PMC3617331.
    78. Hua S, Williams CC, Dimapasoc LM, Ro GS, Ozcan S, Miyamoto S, Lebrilla C, An HJ, Leiserowitz GS. Isomer-specific chromatographic profiling yields highly sensitive and specific potential N-glycan biomarkers for epithelial ovarian cancer. J Chromatogr A. 2013 Mar 01; 1279:58-67. PMID: 23380366.
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    79. Nwosu CC, Huang J, Aldredge DL, Strum JS, Hua S, Seipert RR, Lebrilla C. In-gel nonspecific proteolysis for elucidating glycoproteins: a method for targeted protein-specific glycosylation analysis in complex protein mixtures. Anal Chem. 2013 Jan 15; 85(2):956-63. PMID: 23215446; PMCID: PMC3547527.
    80. Totten SM, Zivkovic AM, Wu S, Ngyuen U, Freeman SL, Ruhaak LR, Darboe MK, German JB, Prentice AM, Lebrilla C. Comprehensive profiles of human milk oligosaccharides yield highly sensitive and specific markers for determining secretor status in lactating mothers. J Proteome Res. 2012 Dec 07; 11(12):6124-33. PMID: 23140396.
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    81. Strum JS, Kim J, Wu S, De Leoz ML, Peacock K, Grimm R, German JB, Mills DA, Lebrilla C. Identification and accurate quantitation of biological oligosaccharide mixtures. Anal Chem. 2012 Sep 18; 84(18):7793-801. PMID: 22897719; PMCID: PMC3457638.
    82. De Leoz ML, Gaerlan SC, Strum JS, Dimapasoc LM, Mirmiran M, Tancredi DJ, Smilowitz JT, Kalanetra KM, Mills DA, German JB, Lebrilla C, Underwood MA. Lacto-N-tetraose, fucosylation, and secretor status are highly variable in human milk oligosaccharides from women delivering preterm. J Proteome Res. 2012 Sep 07; 11(9):4662-72. PMID: 22900748; PMCID: PMC3478894.
    83. Wu S, Salcedo J, Tang N, Waddell K, Grimm R, German JB, Lebrilla C. Employment of tandem mass spectrometry for the accurate and specific identification of oligosaccharide structures. Anal Chem. 2012 Sep 04; 84(17):7456-62. PMID: 22867103; PMCID: PMC3555499.
    84. Kronewitter SR, De Leoz ML, Strum JS, An HJ, Dimapasoc LM, Guerrero A, Miyamoto S, Lebrilla C, Leiserowitz GS. The glycolyzer: automated glycan annotation software for high performance mass spectrometry and its application to ovarian cancer glycan biomarker discovery. Proteomics. 2012 Aug; 12(15-16):2523-38. PMID: 22903841; PMCID: PMC3567444.
    85. Ruhaak LR, Lebrilla C. Analysis and role of oligosaccharides in milk. BMB Rep. 2012 Aug; 45(8):442-51. PMID: 22917028.
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    86. Garrido D, Nwosu C, Ruiz-Moyano S, Aldredge D, German JB, Lebrilla C, Mills DA. Endo-ß-N-acetylglucosaminidases from infant gut-associated bifidobacteria release complex N-glycans from human milk glycoproteins. Mol Cell Proteomics. 2012 Sep; 11(9):775-85. PMID: 22745059; PMCID: PMC3434770.
    87. Lee H, Lerno LA, Choe Y, Chu CS, Gillies LA, Grimm R, Lebrilla C, German JB. Multiple precursor ion scanning of gangliosides and sulfatides with a reversed-phase microfluidic chip and quadrupole time-of-flight mass spectrometry. Anal Chem. 2012 Jul 17; 84(14):5905-12. PMID: 22697387; PMCID: PMC3402638.
    88. Marquez BV, Beck HE, Aweda TA, Phinney B, Holsclaw C, Jewell W, Tran D, Day JJ, Peiris MN, Nwosu C, Lebrilla C, Meares CF. Enhancing peptide ligand binding to vascular endothelial growth factor by covalent bond formation. Bioconjug Chem. 2012 May 16; 23(5):1080-9. PMID: 22537066; PMCID: PMC3431436.
    89. Vieira AC, An HJ, Ozcan S, Kim JH, Lebrilla C, Mannis MJ. Glycomic analysis of tear and saliva in ocular rosacea patients: the search for a biomarker. Ocul Surf. 2012 Jul; 10(3):184-92. PMID: 22814645.
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    90. Ruhaak LR, Lebrilla C. Advances in analysis of human milk oligosaccharides. Adv Nutr. 2012 May 01; 3(3):406S-14S. PMID: 22585919; PMCID: PMC3649477.
    91. Dallas DC, Sela D, Underwood MA, German JB, Lebrilla C. Protein-Linked Glycan Degradation in Infants Fed Human Milk. J Glycomics Lipidomics. 2012 May 01; Suppl 1:002. PMID: 24533224.
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    92. Nwosu CC, Aldredge DL, Lee H, Lerno LA, Zivkovic AM, German JB, Lebrilla C. Comparison of the human and bovine milk N-glycome via high-performance microfluidic chip liquid chromatography and tandem mass spectrometry. J Proteome Res. 2012 May 04; 11(5):2912-24. PMID: 22439776; PMCID: PMC3345083.
    93. Strum JS, Aldredge D, Barile D, Lebrilla C. Coupling flash liquid chromatography with mass spectrometry for enrichment and isolation of milk oligosaccharides for functional studies. Anal Biochem. 2012 May 15; 424(2):87-96. PMID: 22370281; PMCID: PMC3562133.
    94. Aldredge D, An HJ, Tang N, Waddell K, Lebrilla C. Annotation of a serum N-glycan library for rapid identification of structures. J Proteome Res. 2012 Mar 02; 11(3):1958-68. PMID: 22320385; PMCID: PMC3292799.
    95. Hernandez MR, Towns EN, Moore J, Lee H, German JB, Lebrilla C, Parikh AN, Land DP. Use of attenuated total reflectance Fourier transform infrared spectroscopy to study lactosylceramide and GD3 DMPC bilayers. Colloids Surf B Biointerfaces. 2012 Jun 01; 94:374-7. PMID: 22398364.
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    96. Barboza M, Pinzon J, Wickramasinghe S, Froehlich JW, Moeller I, Smilowitz JT, Ruhaak LR, Huang J, Lönnerdal B, German JB, Medrano JF, Weimer BC, Lebrilla C. Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions. Mol Cell Proteomics. 2012 Jun; 11(6):M111.015248. PMID: 22261723; PMCID: PMC3433903.
    97. Ruhaak LR, Miyamoto S, Kelly K, Lebrilla C. N-Glycan profiling of dried blood spots. Anal Chem. 2012 Jan 03; 84(1):396-402. PMID: 22128873; PMCID: PMC3259271.
    98. An HJ, Gip P, Kim J, Wu S, Park KW, McVaugh CT, Schaffer DV, Bertozzi CR, Lebrilla C. Extensive determination of glycan heterogeneity reveals an unusual abundance of high mannose glycans in enriched plasma membranes of human embryonic stem cells. Mol Cell Proteomics. 2012 Apr; 11(4):M111.010660. PMID: 22147732; PMCID: PMC3322563.
    99. Hua S, Lebrilla C, An HJ. Application of nano-LC-based glycomics towards biomarker discovery. Bioanalysis. 2011 Nov; 3(22):2573-85. PMID: 22122604.
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    100. Lee H, An HJ, Lerno LA, German JB, Lebrilla C. Rapid Profiling of Bovine and Human Milk Gangliosides by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Int J Mass Spectrom. 2011 Aug 15; 305(2-3):138-150. PMID: 21860602.
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    101. Hua S, An HJ, Ozcan S, Ro GS, Soares S, DeVere-White R, Lebrilla C. Comprehensive native glycan profiling with isomer separation and quantitation for the discovery of cancer biomarkers. Analyst. 2011 Sep 21; 136(18):3663-71. PMID: 21776491; PMCID: PMC3331797.
    102. Froehlich JW, Barboza M, Chu C, Lerno LA, Clowers BH, Zivkovic AM, German JB, Lebrilla C. Nano-LC-MS/MS of glycopeptides produced by nonspecific proteolysis enables rapid and extensive site-specific glycosylation determination. Anal Chem. 2011 Jul 15; 83(14):5541-7. PMID: 21661761.
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    103. Hua S, Nwosu CC, Strum JS, Seipert RR, An HJ, Zivkovic AM, German JB, Lebrilla C. Site-specific protein glycosylation analysis with glycan isomer differentiation. Anal Bioanal Chem. 2012 May; 403(5):1291-302. PMID: 21647803.
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    104. Wickramasinghe S, Hua S, Rincon G, Islas-Trejo A, German JB, Lebrilla C, Medrano JF. Transcriptome profiling of bovine milk oligosaccharide metabolism genes using RNA-sequencing. PLoS One. 2011 Apr 25; 6(4):e18895. PMID: 21541029.
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    105. Nwosu CC, Seipert RR, Strum JS, Hua SS, An HJ, Zivkovic AM, German BJ, Lebrilla C. Simultaneous and extensive site-specific N- and O-glycosylation analysis in protein mixtures. J Proteome Res. 2011 May 06; 10(5):2612-24. PMID: 21469647; PMCID: PMC3097320.
    106. Dallas DC, Martin WF, Strum JS, Zivkovic AM, Smilowitz JT, Underwood MA, Affolter M, Lebrilla C, German JB. N-linked glycan profiling of mature human milk by high-performance microfluidic chip liquid chromatography time-of-flight tandem mass spectrometry. J Agric Food Chem. 2011 Apr 27; 59(8):4255-63. PMID: 21384928; PMCID: PMC4422756.
    107. Tao N, Wu S, Kim J, An HJ, Hinde K, Power ML, Gagneux P, German JB, Lebrilla C. Evolutionary glycomics: characterization of milk oligosaccharides in primates. J Proteome Res. 2011 Apr 01; 10(4):1548-57. PMID: 21214271; PMCID: PMC3070053.
    108. Sela DA, Li Y, Lerno L, Wu S, Marcobal AM, German JB, Chen X, Lebrilla C, Mills DA. An infant-associated bacterial commensal utilizes breast milk sialyloligosaccharides. J Biol Chem. 2011 Apr 08; 286(14):11909-18. PMID: 21288901; PMCID: PMC3069393.
    109. Li B, Russell SC, Zhang J, Hedrick JL, Lebrilla C. Structure determination by MALDI-IRMPD mass spectrometry and exoglycosidase digestions of O-linked oligosaccharides from Xenopus borealis egg jelly. Glycobiology. 2011 Jul; 21(7):877-94. PMID: 21220250; PMCID: PMC3110487.
    110. Wu S, Grimm R, German JB, Lebrilla C. Annotation and structural analysis of sialylated human milk oligosaccharides. J Proteome Res. 2011 Feb 04; 10(2):856-68. PMID: 21133381; PMCID: PMC3033989.
    111. Chichlowski M, German JB, Lebrilla C, Mills DA. The influence of milk oligosaccharides on microbiota of infants: opportunities for formulas. Annu Rev Food Sci Technol. 2011; 2:331-51. PMID: 22129386.
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    112. An HJ, Lebrilla C. Structure elucidation of native N- and O-linked glycans by tandem mass spectrometry (tutorial). Mass Spectrom Rev. 2011 Jul-Aug; 30(4):560-78. PMID: 21656841.
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    113. de Leoz ML, Young LJ, An HJ, Kronewitter SR, Kim J, Miyamoto S, Borowsky AD, Chew HK, Lebrilla C. High-mannose glycans are elevated during breast cancer progression. Mol Cell Proteomics. 2011 Jan; 10(1):M110.002717. PMID: 21097542; PMCID: PMC3013453.
    114. Nwosu CC, Strum JS, An HJ, Lebrilla C. Enhanced detection and identification of glycopeptides in negative ion mode mass spectrometry. Anal Chem. 2010 Dec 01; 82(23):9654-62. PMID: 21049935; PMCID: PMC2995828.
    115. Kronewitter SR, de Leoz ML, Peacock KS, McBride KR, An HJ, Miyamoto S, Leiserowitz GS, Lebrilla C. Human serum processing and analysis methods for rapid and reproducible N-glycan mass profiling. J Proteome Res. 2010 Oct 01; 9(10):4952-9. PMID: 20698584; PMCID: PMC2948646.
    116. Froehlich JW, Chu CS, Tang N, Waddell K, Grimm R, Lebrilla C. Label-free liquid chromatography-tandem mass spectrometry analysis with automated phosphopeptide enrichment reveals dynamic human milk protein phosphorylation during lactation. Anal Biochem. 2011 Jan 01; 408(1):136-46. PMID: 20804719; PMCID: PMC2964395.
    117. Wu S, Tao N, German JB, Grimm R, Lebrilla C. Development of an annotated library of neutral human milk oligosaccharides. J Proteome Res. 2010 Aug 06; 9(8):4138-51. PMID: 20578730; PMCID: PMC2919513.
    118. Zivkovic AM, German JB, Lebrilla C, Mills DA. Human milk glycobiome and its impact on the infant gastrointestinal microbiota. Proc Natl Acad Sci U S A. 2011 Mar 15; 108 Suppl 1:4653-8. PMID: 20679197; PMCID: PMC3063602.
    119. Froehlich JW, Dodds ED, Barboza M, McJimpsey EL, Seipert RR, Francis J, An HJ, Freeman S, German JB, Lebrilla C. Glycoprotein expression in human milk during lactation. J Agric Food Chem. 2010 May 26; 58(10):6440-8. PMID: 20415418; PMCID: PMC2882031.
    120. Lerno LA, German JB, Lebrilla C. Method for the identification of lipid classes based on referenced Kendrick mass analysis. Anal Chem. 2010 May 15; 82(10):4236-45. PMID: 20426402; PMCID: PMC2875411.
    121. Marcobal A, Barboza M, Froehlich JW, Block DE, German JB, Lebrilla C, Mills DA. Consumption of human milk oligosaccharides by gut-related microbes. J Agric Food Chem. 2010 May 12; 58(9):5334-40. PMID: 20394371; PMCID: PMC2866150.
    122. Tao N, Ochonicky KL, German JB, Donovan SM, Lebrilla C. Structural determination and daily variations of porcine milk oligosaccharides. J Agric Food Chem. 2010 Apr 28; 58(8):4653-9. PMID: 20369835; PMCID: PMC2882034.
    123. An HJ, Lebrilla C. A glycomics approach to the discovery of potential cancer biomarkers. Methods Mol Biol. 2010; 600:199-213. PMID: 19882130.
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    124. Wada Y, Dell A, Haslam SM, Tissot B, Canis K, Azadi P, Bäckström M, Costello CE, Hansson GC, Hiki Y, Ishihara M, Ito H, Kakehi K, Karlsson N, Hayes CE, Kato K, Kawasaki N, Khoo KH, Kobayashi K, Kolarich D, Kondo A, Lebrilla C, Nakano M, Narimatsu H, Novak J, Novotny MV, Ohno E, Packer NH, Palaima E, Renfrow MB, Tajiri M, Thomsson KA, Yagi H, Yu SY, Taniguchi N. Comparison of methods for profiling O-glycosylation: Human Proteome Organisation Human Disease Glycomics/Proteome Initiative multi-institutional study of IgA1. Mol Cell Proteomics. 2010 Apr; 9(4):719-27. PMID: 20038609; PMCID: PMC2860227.
    125. Barboza M, Sela DA, Pirim C, Locascio RG, Freeman SL, German JB, Mills DA, Lebrilla C. Glycoprofiling bifidobacterial consumption of galacto-oligosaccharides by mass spectrometry reveals strain-specific, preferential consumption of glycans. Appl Environ Microbiol. 2009 Dec; 75(23):7319-25. PMID: 19801485; PMCID: PMC2786398.
    126. An HJ, Kronewitter SR, de Leoz ML, Lebrilla C. Glycomics and disease markers. Curr Opin Chem Biol. 2009 Dec; 13(5-6):601-7. PMID: 19775929; PMCID: PMC2788081.
    127. Barile D, Tao N, Lebrilla C, Coisson JD, Arlorio M, German JB. Permeate from cheese whey ultrafiltration is a source of milk oligosaccharides. Int Dairy J. 2009 Sep 01; 19(9):524-530. PMID: 20161544.
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    128. An HJ, Froehlich JW, Lebrilla C. Determination of glycosylation sites and site-specific heterogeneity in glycoproteins. Curr Opin Chem Biol. 2009 Oct; 13(4):421-6. PMID: 19700364; PMCID: PMC2749913.
    129. Barkauskas DA, Kronewitter SR, Lebrilla C, Rocke DM. Analysis of MALDI FT-ICR mass spectrometry data: a time series approach. Anal Chim Acta. 2009 Aug 26; 648(2):207-14. PMID: 19646586; PMCID: PMC2772212.
    130. Dodds ED, Tassone F, Hagerman PJ, Lebrilla C. Polymerase chain reaction, nuclease digestion, and mass spectrometry based assay for the trinucleotide repeat status of the fragile X mental retardation 1 gene. Anal Chem. 2009 Jul 01; 81(13):5533-40. PMID: 19514725; PMCID: PMC2744861.
    131. Kronewitter SR, An HJ, de Leoz ML, Lebrilla C, Miyamoto S, Leiserowitz GS. The development of retrosynthetic glycan libraries to profile and classify the human serum N-linked glycome. Proteomics. 2009 Jun; 9(11):2986-94. PMID: 19452454; PMCID: PMC2758495.
    132. Cooke CL, An HJ, Kim J, Canfield DR, Torres J, Lebrilla C, Solnick JV. Modification of gastric mucin oligosaccharide expression in rhesus macaques after infection with Helicobacter pylori. Gastroenterology. 2009 Sep; 137(3):1061-71, 1071.e1-8. PMID: 19375420.
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    133. Chu CS, Niñonuevo MR, Clowers BH, Perkins PD, An HJ, Yin H, Killeen K, Miyamoto S, Grimm R, Lebrilla C. Profile of native N-linked glycan structures from human serum using high performance liquid chromatography on a microfluidic chip and time-of-flight mass spectrometry. Proteomics. 2009 Apr; 9(7):1939-51. PMID: 19288519; PMCID: PMC2765869.
    134. Seipert RR, Dodds ED, Lebrilla C. Exploiting differential dissociation chemistries of O-linked glycopeptide ions for the localization of mucin-type protein glycosylation. J Proteome Res. 2009 Feb; 8(2):493-501. PMID: 19067536; PMCID: PMC2680678.
    135. Dodds ED, Seipert RR, Clowers BH, German JB, Lebrilla C. Analytical performance of immobilized pronase for glycopeptide footprinting and implications for surpassing reductionist glycoproteomics. J Proteome Res. 2009 Feb; 8(2):502-12. PMID: 19072223; PMCID: PMC2637306.
    136. Li B, An HJ, Hedrick JL, Lebrilla C. Infrared multiphoton dissociation mass spectrometry for structural elucidation of oligosaccharides. Methods Mol Biol. 2009; 534:23-35. PMID: 19277545.
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    137. Li B, An HJ, Hedrick JL, Lebrilla C. Collision-induced dissociation tandem mass spectrometry for structural elucidation of glycans. Methods Mol Biol. 2009; 534:133-45. PMID: 19277555.
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    138. Barkauskas DA, An HJ, Kronewitter SR, de Leoz ML, Chew HK, de Vere White RW, Leiserowitz GS, Miyamoto S, Lebrilla C, Rocke DM. Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data. Bioinformatics. 2009 Jan 15; 25(2):251-7. PMID: 19073586; PMCID: PMC2639011.
    139. Locascio RG, Niñonuevo MR, Kronewitter SR, Freeman SL, German JB, Lebrilla C, Mills DA. A versatile and scalable strategy for glycoprofiling bifidobacterial consumption of human milk oligosaccharides. Microb Biotechnol. 2009 May; 2(3):333-42. PMID: 21261928; PMCID: PMC3815754.
    140. Lebrilla C, An HJ. The prospects of glycan biomarkers for the diagnosis of diseases. Mol Biosyst. 2009 Jan; 5(1):17-20. PMID: 19081926.
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    141. Williams TI, Saggese DA, Toups KL, Frahm JL, An HJ, Li B, Lebrilla C, Muddiman DC. Investigations with O-linked protein glycosylations by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. J Mass Spectrom. 2008 Sep; 43(9):1215-23. PMID: 18324610; PMCID: PMC2642518.
    142. Argov N, Wachsmann-Hogiu S, Freeman SL, Huser T, Lebrilla C, German JB. Size-dependent lipid content in human milk fat globules. J Agric Food Chem. 2008 Aug 27; 56(16):7446-50. PMID: 18656925.
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    143. Li B, An HJ, Kirmiz C, Lebrilla C, Lam KS, Miyamoto S. Glycoproteomic analyses of ovarian cancer cell lines and sera from ovarian cancer patients show distinct glycosylation changes in individual proteins. J Proteome Res. 2008 Sep; 7(9):3776-88. PMID: 18642944.
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    144. Clowers BH, Dodds ED, Seipert RR, Lebrilla C. Dual polarity accurate mass calibration for electrospray ionization and matrix-assisted laser desorption/ionization mass spectrometry using maltooligosaccharides. Anal Biochem. 2008 Oct 15; 381(2):205-13. PMID: 18655765; PMCID: PMC3410823.
    145. Seipert RR, Dodds ED, Clowers BH, Beecroft SM, German JB, Lebrilla C. Factors that influence fragmentation behavior of N-linked glycopeptide ions. Anal Chem. 2008 May 15; 80(10):3684-92. PMID: 18363335.
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    146. de Leoz ML, An HJ, Kronewitter S, Kim J, Beecroft S, Vinall R, Miyamoto S, de Vere White R, Lam KS, Lebrilla C. Glycomic approach for potential biomarkers on prostate cancer: profiling of N-linked glycans in human sera and pRNS cell lines. Dis Markers. 2008; 25(4-5):243-58. PMID: 19126968; PMCID: PMC3827814.
    147. German JB, Freeman SL, Lebrilla C, Mills DA. Human milk oligosaccharides: evolution, structures and bioselectivity as substrates for intestinal bacteria. Nestle Nutr Workshop Ser Pediatr Program. 2008; 62:205-18; discussion 218-22. PMID: 18626202; PMCID: PMC2861563.
    148. Niñonuevo MR, Perkins PD, Francis J, Lamotte LM, LoCascio RG, Freeman SL, Mills DA, German JB, Grimm R, Lebrilla C. Daily variations in oligosaccharides of human milk determined by microfluidic chips and mass spectrometry. J Agric Food Chem. 2008 Jan 23; 56(2):618-26. PMID: 18088092.
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    149. Ye J, Liu H, Kirmiz C, Lebrilla C, Rocke DM. On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve. BMC Bioinformatics. 2007 Dec 12; 8:477. PMID: 18076765; PMCID: PMC2211327.
    150. Seipert RR, Barboza M, Niñonuevo MR, LoCascio RG, Mills DA, Freeman SL, German JB, Lebrilla C. Analysis and quantitation of fructooligosaccharides using matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. Anal Chem. 2008 Jan 01; 80(1):159-65. PMID: 18044961.
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    151. McJimpsey EL, Jackson WM, Lebrilla C, Tobias H, Bogan MJ, Gard EE, Frank M, Steele PT. Parameters contributing to efficient ion generation in aerosol MALDI mass spectrometry. J Am Soc Mass Spectrom. 2008 Mar; 19(3):315-24. PMID: 18155920.
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    152. Dodds ED, German JB, Lebrilla C. Enabling MALDI-FTICR-MS/MS for high-performance proteomics through combination of infrared and collisional activation. Anal Chem. 2007 Dec 15; 79(24):9547-56. PMID: 18001128.
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    153. Ward RE, Niñonuevo M, Mills DA, Lebrilla C, German JB. In vitro fermentability of human milk oligosaccharides by several strains of bifidobacteria. Mol Nutr Food Res. 2007 Nov; 51(11):1398-405. PMID: 17966141.
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    154. Dodds ED, Clowers BH, Hagerman PJ, Lebrilla C. Systematic characterization of high mass accuracy influence on false discovery and probability scoring in peptide mass fingerprinting. Anal Biochem. 2008 Jan 15; 372(2):156-66. PMID: 17980142; PMCID: PMC2696393.
    155. Cooke CL, An HJ, Kim J, Solnick JV, Lebrilla C. Method for profiling mucin oligosaccharides from gastric biopsies of rhesus monkeys with and without Helicobacter pylori infection. Anal Chem. 2007 Nov 01; 79(21):8090-7. PMID: 17918860.
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    156. LoCascio RG, Ninonuevo MR, Freeman SL, Sela DA, Grimm R, Lebrilla C, Mills DA, German JB. Glycoprofiling of bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation. J Agric Food Chem. 2007 Oct 31; 55(22):8914-9. PMID: 17915960.
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    157. Clowers BH, Dodds ED, Seipert RR, Lebrilla C. Site determination of protein glycosylation based on digestion with immobilized nonspecific proteases and Fourier transform ion cyclotron resonance mass spectrometry. J Proteome Res. 2007 Oct; 6(10):4032-40. PMID: 17824634.
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    158. Dodds ED, Hagerman PJ, Lebrilla C. Fragmentation of singly protonated peptides via a combination of infrared and collisional activation. Anal Chem. 2006 Dec 15; 78(24):8506-11. PMID: 17165846.
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    159. Ninonuevo MR, Ward RE, LoCascio RG, German JB, Freeman SL, Barboza M, Mills DA, Lebrilla C. Methods for the quantitation of human milk oligosaccharides in bacterial fermentation by mass spectrometry. Anal Biochem. 2007 Feb 01; 361(1):15-23. PMID: 17181994.
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    160. Ninonuevo MR, Park Y, Yin H, Zhang J, Ward RE, Clowers BH, German JB, Freeman SL, Killeen K, Grimm R, Lebrilla C. A strategy for annotating the human milk glycome. J Agric Food Chem. 2006 Oct 04; 54(20):7471-80. PMID: 17002410.
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    161. An HJ, Tillinghast JS, Woodruff DL, Rocke DM, Lebrilla C. A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins. J Proteome Res. 2006 Oct; 5(10):2800-8. PMID: 17022651.
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    162. Kirmiz C, Li B, An HJ, Clowers BH, Chew HK, Lam KS, Ferrige A, Alecio R, Borowsky AD, Sulaimon S, Lebrilla C, Miyamoto S. A serum glycomics approach to breast cancer biomarkers. Mol Cell Proteomics. 2007 Jan; 6(1):43-55. PMID: 16847285.
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    163. Lancaster KS, An HJ, Li B, Lebrilla C. Interrogation of N-Linked oligosaccharides using infrared multiphoton dissociation in FT-ICR mass spectrometry. Anal Chem. 2006 Jul 15; 78(14):4990-7. PMID: 16841922.
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    164. An HJ, Miyamoto S, Lancaster KS, Kirmiz C, Li B, Lam KS, Leiserowitz GS, Lebrilla C. Profiling of glycans in serum for the discovery of potential biomarkers for ovarian cancer. J Proteome Res. 2006 Jul; 5(7):1626-35. PMID: 16823970.
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    165. Ward RE, Niñonuevo M, Mills DA, Lebrilla C, German JB. In vitro fermentation of breast milk oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri. Appl Environ Microbiol. 2006 Jun; 72(6):4497-9. PMID: 16751577; PMCID: PMC1489581.
    166. Le Coq J, An HJ, Lebrilla C, Viola RE. Characterization of human aspartoacylase: the brain enzyme responsible for Canavan disease. Biochemistry. 2006 May 09; 45(18):5878-84. PMID: 16669630; PMCID: PMC2566822.
    167. Dodds ED, An HJ, Hagerman PJ, Lebrilla C. Enhanced peptide mass fingerprinting through high mass accuracy: Exclusion of non-peptide signals based on residual mass. J Proteome Res. 2006 May; 5(5):1195-203. PMID: 16674109.
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    168. Cong X, Czerwieniec G, McJimpsey E, Ahn S, Troy FA, Lebrilla C. Structural relationships in small molecule interactions governing gas-phase enantioselectivity and zwitterionic formation. J Am Soc Mass Spectrom. 2006 Mar; 17(3):442-52. PMID: 16469502.
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    169. An HJ, Ninonuevo M, Aguilan J, Liu H, Lebrilla C, Alvarenga LS, Mannis MJ. Glycomics analyses of tear fluid for the diagnostic detection of ocular rosacea. J Proteome Res. 2005 Nov-Dec; 4(6):1981-7. PMID: 16335942.
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    170. Niñonuevo M, An H, Yin H, Killeen K, Grimm R, Ward R, German B, Lebrilla C. Nanoliquid chromatography-mass spectrometry of oligosaccharides employing graphitized carbon chromatography on microchip with a high-accuracy mass analyzer. Electrophoresis. 2005 Oct; 26(19):3641-9. PMID: 16196105.
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    171. Czerwieniec GA, Russell SC, Lebrilla C, Coffee KR, Riot V, Steele PT, Frank M, Gard EE. Improved sensitivity and mass range in time-of-flight bioaerosol mass spectrometry using an electrostatic ion guide. J Am Soc Mass Spectrom. 2005 Nov; 16(11):1866-75. PMID: 16198596.
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    172. Russell SC, Czerwieniec G, Lebrilla C, Steele P, Riot V, Coffee K, Frank M, Gard EE. Achieving high detection sensitivity (14 zmol) of biomolecular ions in bioaerosol mass spectrometry. Anal Chem. 2005 Aug 01; 77(15):4734-41. PMID: 16053283.
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    173. Zhang J, Lamotte L, Dodds ED, Lebrilla C. Atmospheric pressure MALDI Fourier transform mass spectrometry of labile oligosaccharides. Anal Chem. 2005 Jul 15; 77(14):4429-38. PMID: 16013856.
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    174. Ying L, Liu R, Zhang J, Lam K, Lebrilla C, Gervay-Hague J. A topologically segregated one-bead-one-compound combinatorial glycopeptide library for identification of lectin ligands. J Comb Chem. 2005 May-Jun; 7(3):372-84. PMID: 15877466.
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