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David M Rocke

Title(s)Professor, Public Health Sciences
SchoolUniversity of California, Davis
Phone530-752-6999
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Halloran JT, Zhang H, Kara K, Renggli C, The M, Zhang C, Rocke DM, Käll L, Noble WS. Speeding Up Percolator. J Proteome Res. 2019 Sep 06; 18(9):3353-3359. PMID: 31407580.
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    2. Tchanque-Fossuo CN, Dahle SE, Lev-Tov H, West KIM, Li CS, Rocke DM, Isseroff RR. Cellular versus acellular matrix devices in the treatment of diabetic foot ulcers: Interim results of a comparative efficacy randomized controlled trial. J Tissue Eng Regen Med. 2019 Aug; 13(8):1430-1437. PMID: 31070860.
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    3. Karim N, Durbin-Johnson B, Rocke DM, Salemi M, Phinney BS, Naeem M, Rice RH. Proteomic manifestations of genetic defects in autosomal recessive congenital ichthyosis. J Proteomics. 2019 Jun 15; 201:104-109. PMID: 30978464.
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    4. Vaisar T, Durbin-Johnson B, Whitlock K, Babenko I, Mehrotra R, Rocke DM, Afkarian M. Erratum. Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes. Diabetes Care 2018;41:2361-2369. Diabetes Care. 2019 Jun; 42(6):1155. PMID: 30936112.
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    5. Milan JA, Wu PW, Salemi MR, Durbin-Johnson BP, Rocke DM, Phinney BS, Rice RH, Parker GJ. Comparison of protein expression levels and proteomically-inferred genotypes using human hair from different body sites. Forensic Sci Int Genet. 2019 07; 41:19-23. PMID: 30939338.
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    6. Halloran JT, Rocke DM. Learning Concave Conditional Likelihood Models for Improved Analysis of Tandem Mass Spectra. Adv Neural Inf Process Syst. 2018 Dec; 31:5420-5430. PMID: 31745383.
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    7. Vaisar T, Durbin-Johnson B, Whitlock K, Babenko I, Mehrotra R, Rocke DM, Afkarian M. Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes. Diabetes Care. 2018 11; 41(11):2361-2369. PMID: 30150236.
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    8. Rice RH, Durbin-Johnson BP, Mann SM, Salemi M, Urayama S, Rocke DM, Phinney BS, Sundberg JP. Corneocyte proteomics: Applications to skin biology and dermatology. Exp Dermatol. 2018 08; 27(8):931-938. PMID: 30033667.
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    9. Halloran JT, Rocke DM. A Matter of Time: Faster Percolator Analysis via Efficient SVM Learning for Large-Scale Proteomics. J Proteome Res. 2018 05 04; 17(5):1978-1982. PMID: 29607643.
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    10. Albrecht H, Yang HY, Kiuru M, Maksaereekul S, Durbin-Johnson B, Wong MS, Stevenson TR, Rocke DM, Isseroff RR. The Beta 2 Adrenergic Receptor Antagonist Timolol Improves Healing of Combined Burn and Radiation Wounds. Radiat Res. 2018 04; 189(4):441-445. PMID: 29373090.
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    11. Gupta RR, Delai PLR, Glaser DL, Rocke DM, Al Mukaddam M, Pignolo RJ, Kaplan FS. Prevalence and risk factors for kidney stones in fibrodysplasia ossificans progressiva. Bone. 2018 04; 109:120-123. PMID: 29241827.
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    12. Halloran JT, Rocke DM. Gradients of Generative Models for Improved Discriminative Analysis of Tandem Mass Spectra. Adv Neural Inf Process Syst. 2017 Dec; 30:5724-5733. PMID: 31745382.
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    13. Almario RU, Buchan WM, Rocke DM, Karakas SE. Glucose-lowering effect of whey protein depends upon clinical characteristics of patients with type 2 diabetes. BMJ Open Diabetes Res Care. 2017; 5(1):e000420. PMID: 28761664.
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    14. Wu PW, Mason KE, Durbin-Johnson BP, Salemi M, Phinney BS, Rocke DM, Parker GJ, Rice RH. Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides. Proteomics. 2017 Jul; 17(13-14). PMID: 28544375.
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    15. Rice RH, Durbin-Johnson BP, Salemi M, Schwartz ME, Rocke DM, Phinney BS. Proteomic profiling of Pachyonychia congenita plantar callus. J Proteomics. 2017 08 08; 165:132-137. PMID: 28648685.
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    16. Pignolo RJ, Durbin-Johnson BP, Rocke DM, Kaplan FS. Joint-specific risk of impaired function in fibrodysplasia ossificans progressiva (FOP). Bone. 2018 04; 109:124-133. PMID: 28627475.
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    17. Dimachkie MM, Abuzinadah AR, Barohn RJ, Oskarsson B, Rocke DM, Dengel K, Richman DP. Myasthenia gravis exacerbation after discontinuing mycophenolate: A single-center cohort study. Neurology. 2016 11 08; 87(19):2067-2068. PMID: 27821567.
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    18. Parker GJ, Leppert T, Anex DS, Hilmer JK, Matsunami N, Baird L, Stevens J, Parsawar K, Durbin-Johnson BP, Rocke DM, Nelson C, Fairbanks DJ, Wilson AS, Rice RH, Woodward SR, Bothner B, Hart BR, Leppert M. Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome. PLoS One. 2016; 11(9):e0160653. PMID: 27603779.
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    19. Rice RH, Durbin-Johnson BP, Ishitsuka Y, Salemi M, Phinney BS, Rocke DM, Roop DR. Proteomic Analysis of Loricrin Knockout Mouse Epidermis. J Proteome Res. 2016 08 05; 15(8):2560-6. PMID: 27418529.
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    20. Perkins SM, Bacchetti P, Davey CS, Lindsell CJ, Mazumdar M, Oster RA, Peduzzi PN, Rocke DM, Rudser KD, Kim M. Best Practices for Biostatistical Consultation and Collaboration in Academic Health Centers. Am Stat. 2016; 70(2):187-194. PMID: 27777443.
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    21. Oskarsson B, Rocke DM, Dengel K, Richman DP. Myasthenia gravis exacerbation after discontinuing mycophenolate: A single-center cohort study. Neurology. 2016 Mar 22; 86(12):1159-63. PMID: 26850977.
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    22. Pignolo RJ, Bedford-Gay C, Liljesthröm M, Durbin-Johnson BP, Shore EM, Rocke DM, Kaplan FS. The Natural History of Flare-Ups in Fibrodysplasia Ossificans Progressiva (FOP): A Comprehensive Global Assessment. J Bone Miner Res. 2016 Mar; 31(3):650-6. PMID: 27025942.
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    23. Ruhaak LR, Barkauskas DA, Torres J, Cooke CL, Wu LD, Stroble C, Ozcan S, Williams CC, Camorlinga M, Rocke DM, Lebrilla CB, Solnick JV. The Serum Immunoglobulin G Glycosylation Signature of Gastric Cancer. EuPA Open Proteom. 2015 Mar 01; 6:1-9. PMID: 25685702.
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    24. Satake N, Duong C, Chen C, Barisone GA, Diaz E, Tuscano J, Rocke DM, Nolta J, Nitin N. Targeted therapy with MXD3 siRNA, anti-CD22 antibody and nanoparticles for precursor B-cell acute lymphoblastic leukaemia. Br J Haematol. 2014 Nov; 167(4):487-99. PMID: 25196579.
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    25. Laatsch CN, Durbin-Johnson BP, Rocke DM, Mukwana S, Newland AB, Flagler MJ, Davis MG, Eigenheer RA, Phinney BS, Rice RH. Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis. PeerJ. 2014; 2:e506. PMID: 25165623.
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    26. Grimsrud KN, Ait-Oudhia S, Durbin-Johnson BP, Rocke DM, Mama KR, Rezende ML, Stanley SD, Jusko WJ. Pharmacokinetic and pharmacodynamic analysis comparing diverse effects of detomidine, medetomidine, and dexmedetomidine in the horse: a population analysis. J Vet Pharmacol Ther. 2015 Feb; 38(1):24-34. PMID: 25073816.
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    27. Xia J, Rocke DM, Perry G, Ray M. Differential network analyses of Alzheimer's disease identify early events in Alzheimer's disease pathology. Int J Alzheimers Dis. 2014; 2014:721453. PMID: 25147748.
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    28. Ibáñez AM, Martinelli F, Reagan RL, Uratsu SL, Vo A, Tinoco MA, Phu ML, Chen Y, Rocke DM, Dandekar AM. Transcriptome and metabolome analysis of citrus fruit to elucidate puffing disorder. Plant Sci. 2014 Mar; 217-218:87-98. PMID: 24467900.
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    29. Ozcan S, Barkauskas DA, Renee Ruhaak L, Torres J, Cooke CL, An HJ, Hua S, Williams CC, Dimapasoc LM, Han Kim J, Camorlinga-Ponce M, Rocke D, Lebrilla CB, Solnick JV. Serum glycan signatures of gastric cancer. Cancer Prev Res (Phila). 2014 Feb; 7(2):226-35. PMID: 24327722.
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    30. Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Schmuth M, Gruber R. Distinguishing ichthyoses by protein profiling. PLoS One. 2013; 8(10):e75355. PMID: 24130705.
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    31. Mall C, Rocke DM, Durbin-Johnson B, Weiss RH. Stability of miRNA in human urine supports its biomarker potential. Biomark Med. 2013 Aug; 7(4):623-31. PMID: 23905899.
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    32. Stewart DN, Lango J, Nambiar KP, Falso MJ, FitzGerald PG, Rocke DM, Hammock BD, Buchholz BA. Carbon turnover in the water-soluble protein of the adult human lens. Mol Vis. 2013; 19:463-75. PMID: 23441119.
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    33. Rice RH, Winters BR, Durbin-Johnson BP, Rocke DM. Chicken corneocyte cross-linked proteome. J Proteome Res. 2013 Feb 01; 12(2):771-6. PMID: 23256538.
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    34. Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Sundberg JP. Differentiating inbred mouse strains from each other and those with single gene mutations using hair proteomics. PLoS One. 2012; 7(12):e51956. PMID: 23251662.
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    35. Yunis R, Albrecht H, Kalanetra KM, Wu S, Rocke DM. Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation. J Radiat Res. 2012 Nov 01; 53(6):860-75. PMID: 22915785.
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    36. Kitterman JA, Strober JB, Kan L, Rocke DM, Cali A, Peeper J, Snow J, Delai PL, Morhart R, Pignolo RJ, Shore EM, Kaplan FS. Neurological symptoms in individuals with fibrodysplasia ossificans progressiva. J Neurol. 2012 Dec; 259(12):2636-43. PMID: 22752062.
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    37. Ray M, Yunis R, Chen X, Rocke DM. Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks. BMC Genomics. 2012 May 17; 13:190. PMID: 22594378.
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    38. Fritz HM, Buchholz KR, Chen X, Durbin-Johnson B, Rocke DM, Conrad PA, Boothroyd JC. Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts. PLoS One. 2012; 7(2):e29998. PMID: 22347997.
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    39. Romano PS, Marcin JP, Dai JJ, Yang XD, Kravitz RL, Rocke DM, Dharmar M, Li Z. Impact of public reporting of coronary artery bypass graft surgery performance data on market share, mortality, and patient selection. Med Care. 2011 Dec; 49(12):1118-25. PMID: 22002641.
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    40. Albrecht H, Durbin-Johnson B, Yunis R, Kalanetra KM, Wu S, Chen R, Stevenson TR, Rocke DM. Transcriptional response of ex vivo human skin to ionizing radiation: comparison between low- and high-dose effects. Radiat Res. 2012 Jan; 177(1):69-83. PMID: 22029842.
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    41. Buchholz KR, Fritz HM, Chen X, Durbin-Johnson B, Rocke DM, Ferguson DJ, Conrad PA, Boothroyd JC. Identification of tissue cyst wall components by transcriptome analysis of in vivo and in vitro Toxoplasma gondii bradyzoites. Eukaryot Cell. 2011 Dec; 10(12):1637-47. PMID: 22021236.
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    42. Afify AM, Tate S, Durbin-Johnson B, Rocke DM, Konia T. Expression of CD44s and CD44v6 in lung cancer and their correlation with prognostic factors. Int J Biol Markers. 2011 Jan-Mar; 26(1):50-7. PMID: 21279958.
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    43. Chen Y, Wu R, Felton J, Rocke DM, Chakicherla A. A Method to Detect Differential Gene Expression in Cross-Species Hybridization Experiments at Gene and Probe Level. Biomed Inform Insights. 2010; 3:1-10. PMID: 28190956.
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    44. Chen Y, Wu R, Felton J, Rocke DM, Chakicherla A. A Method to Detect Differential Gene expression in Cross-Species Hybridization Experiments at Gene and Probe Level. Biomed Inform Insights. 2010 Mar 05; 2010(3):1-10. PMID: 20798791.
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    45. Kaplan FS, Zasloff MA, Kitterman JA, Shore EM, Hong CC, Rocke DM. Early mortality and cardiorespiratory failure in patients with fibrodysplasia ossificans progressiva. J Bone Joint Surg Am. 2010 Mar; 92(3):686-91. PMID: 20194327.
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    46. Barkauskas DA, Rocke DM. A general-purpose baseline estimation algorithm for spectroscopic data. Anal Chim Acta. 2010 Jan 11; 657(2):191-7. PMID: 20005331.
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    47. Maron JL, Johnson KL, Rocke DM, Cohen MG, Liley AJ, Bianchi DW. Neonatal salivary analysis reveals global developmental gene expression changes in the premature infant. Clin Chem. 2010 Mar; 56(3):409-16. PMID: 19959617.
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    48. Li B, Li D, Lau DH, Farwell DG, Luu Q, Rocke DM, Newman K, Courquin J, Purdy JA, Chen AM. Clinical-dosimetric analysis of measures of dysphagia including gastrostomy-tube dependence among head and neck cancer patients treated definitively by intensity-modulated radiotherapy with concurrent chemotherapy. Radiat Oncol. 2009 Nov 12; 4:52. PMID: 19909531.
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    49. Clermont G, Auffray C, Moreau Y, Rocke DM, Dalevi D, Dubhashi D, Marshall DR, Raasch P, Dehne F, Provero P, Tegner J, Aronow BJ, Langston MA, Benson M. Bridging the gap between systems biology and medicine. Genome Med. 2009 Sep 29; 1(9):88. PMID: 19754960.
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    50. Martinelli F, Uratsu SL, Reagan RL, Chen Y, Tricoli D, Fiehn O, Rocke DM, Gasser CS, Dandekar AM. Gene regulation in parthenocarpic tomato fruit. J Exp Bot. 2009; 60(13):3873-90. PMID: 19700496.
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    51. Barkauskas DA, Kronewitter SR, Lebrilla CB, Rocke DM. Analysis of MALDI FT-ICR mass spectrometry data: a time series approach. Anal Chim Acta. 2009 Aug 26; 648(2):207-14. PMID: 19646586.
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    52. Berglund SR, Santana AR, Li D, Rice RH, Rocke DM, Goldberg Z. Proteomic analysis of low dose arsenic and ionizing radiation exposure on keratinocytes. Proteomics. 2009 Apr; 9(7):1925-38. PMID: 19294697.
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    53. Rice RH, Rocke DM, Tsai HS, Silva KA, Lee YJ, Sundberg JP. Distinguishing mouse strains by proteomic analysis of pelage hair. J Invest Dermatol. 2009 Sep; 129(9):2120-5. PMID: 19295613.
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    54. Corbett BA, Constantine LJ, Hendren R, Rocke D, Ozonoff S. Examining executive functioning in children with autism spectrum disorder, attention deficit hyperactivity disorder and typical development. Psychiatry Res. 2009 Apr 30; 166(2-3):210-22. PMID: 19285351.
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    55. Wheeler CA, Jafarzadeh SR, Rocke DM, Grodzinsky AJ. IGF-1 does not moderate the time-dependent transcriptional patterns of key homeostatic genes induced by sustained compression of bovine cartilage. Osteoarthritis Cartilage. 2009 Jul; 17(7):944-52. PMID: 19250984.
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    56. Sivamani RK, Pullar CE, Manabat-Hidalgo CG, Rocke DM, Carlsen RC, Greenhalgh DG, Isseroff RR. Stress-mediated increases in systemic and local epinephrine impair skin wound healing: potential new indication for beta blockers. PLoS Med. 2009 Jan 13; 6(1):e12. PMID: 19143471.
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    57. Li Z, Kravitz RL, Marcin JP, Romano PS, Rocke DM, Denton TA, Brindis RG, Dai J, Amsterdam EA. Survival enhancing indications for coronary artery bypass graft surgery in California. BMC Health Serv Res. 2008 Dec 16; 8:257. PMID: 19087305.
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    58. Barkauskas DA, An HJ, Kronewitter SR, de Leoz ML, Chew HK, de Vere White RW, Leiserowitz GS, Miyamoto S, Lebrilla CB, Rocke DM. Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data. Bioinformatics. 2009 Jan 15; 25(2):251-7. PMID: 19073586.
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    59. Jung KH, Dardick C, Bartley LE, Cao P, Phetsom J, Canlas P, Seo YS, Shultz M, Ouyang S, Yuan Q, Frank BC, Ly E, Zheng L, Jia Y, Hsia AP, An K, Chou HH, Rocke D, Lee GC, Schnable PS, An G, Buell CR, Ronald PC. Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One. 2008 Oct 06; 3(10):e3337. PMID: 18836531.
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    60. Xi Y, Rocke DM. Baseline correction for NMR spectroscopic metabolomics data analysis. BMC Bioinformatics. 2008 Jul 29; 9:324. PMID: 18664284.
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    61. Lu R, Lee GC, Shultz M, Dardick C, Jung K, Phetsom J, Jia Y, Rice RH, Goldberg Z, Schnable PS, Ronald P, Rocke DM. Assessing probe-specific dye and slide biases in two-color microarray data. BMC Bioinformatics. 2008 Jul 19; 9:314. PMID: 18638416.
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    62. Zwienenberg-Lee M, Hartman J, Rudisill N, Madden LK, Smith K, Eskridge J, Newell D, Verweij B, Bullock MR, Baker A, Coplin W, Mericle R, Dai J, Rocke D, Muizelaar JP. Effect of prophylactic transluminal balloon angioplasty on cerebral vasospasm and outcome in patients with Fisher grade III subarachnoid hemorrhage: results of a phase II multicenter, randomized, clinical trial. Stroke. 2008 Jun; 39(6):1759-65. PMID: 18420953.
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    63. Marcin JP, Li Z, Kravitz RL, Dai JJ, Rocke DM, Romano PS. The CABG surgery volume-outcome relationship: temporal trends and selection effects in California, 1998-2004. Health Serv Res. 2008 Feb; 43(1 Pt 1):174-92. PMID: 18211524.
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    64. Ye J, Liu H, Kirmiz C, Lebrilla CB, Rocke DM. On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve. BMC Bioinformatics. 2007 Dec 12; 8:477. PMID: 18076765.
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    65. Berglund SR, Rocke DM, Dai J, Schwietert CW, Santana A, Stern RL, Lehmann J, Hartmann Siantar CL, Goldberg Z. Transient genome-wide transcriptional response to low-dose ionizing radiation in vivo in humans. Int J Radiat Oncol Biol Phys. 2008 Jan 01; 70(1):229-34. PMID: 17996396.
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    66. Corbett BA, Kantor AB, Schulman H, Walker WL, Lit L, Ashwood P, Rocke DM, Sharp FR. A proteomic study of serum from children with autism showing differential expression of apolipoproteins and complement proteins. Mol Psychiatry. 2007 Mar; 12(3):292-306. PMID: 17189958.
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    67. An HJ, Tillinghast JS, Woodruff DL, Rocke DM, Lebrilla CB. A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins. J Proteome Res. 2006 Oct; 5(10):2800-8. PMID: 17022651.
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    68. Rea MA, Zhou L, Qin Q, Barrandon Y, Easley KW, Gungner SF, Phillips MA, Holland WS, Gumerlock PH, Rocke DM, Rice RH. Spontaneous immortalization of human epidermal cells with naturally elevated telomerase. J Invest Dermatol. 2006 Nov; 126(11):2507-15. PMID: 16778798.
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    69. Goldberg Z, Rocke DM, Schwietert C, Berglund SR, Santana A, Jones A, Lehmann J, Stern R, Lu R, Hartmann Siantar C. Human in vivo dose-response to controlled, low-dose low linear energy transfer ionizing radiation exposure. Clin Cancer Res. 2006 Jun 15; 12(12):3723-9. PMID: 16778099.
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    70. Dai JJ, Lieu L, Rocke D. Dimension reduction for classification with gene expression microarray data. Stat Appl Genet Mol Biol. 2006; 5:Article6. PMID: 16646870.
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    71. Lehmann J, Stern RL, Daly TP, Rocke DM, Schwietert CW, Jones GE, Arnold ML, Siantar CL, Goldberg Z. Dosimetry for quantitative analysis of the effects of low-dose ionizing radiation in radiation therapy patients. Radiat Res. 2006 Feb; 165(2):240-7. PMID: 16435922.
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    72. Kitterman JA, Kantanie S, Rocke DM, Kaplan FS. Iatrogenic harm caused by diagnostic errors in fibrodysplasia ossificans progressiva. Pediatrics. 2005 Nov; 116(5):e654-61. PMID: 16230464.
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    73. Abel K, Rocke DM, Chohan B, Fritts L, Miller CJ. Temporal and anatomic relationship between virus replication and cytokine gene expression after vaginal simian immunodeficiency virus infection. J Virol. 2005 Oct; 79(19):12164-72. PMID: 16160143.
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    74. Zhou L, Rocke DM. An expression index for Affymetrix GeneChips based on the generalized logarithm. Bioinformatics. 2005 Nov 01; 21(21):3983-9. PMID: 16159924.
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    75. Rocke DM, Goldberg Z, Schweitert C, Santana A. A method for detection of differential gene expression in the presence of inter-individual variability in response. Bioinformatics. 2005 Nov 01; 21(21):3990-2. PMID: 16159922.
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    76. Rocke DM. Design and analysis of experiments with high throughput biological assay data. Semin Cell Dev Biol. 2004 Dec; 15(6):703-13. PMID: 15561590.
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    77. Scarlett RF, Rocke DM, Kantanie S, Patel JB, Shore EM, Kaplan FS. Influenza-like viral illnesses and flare-ups of fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 2004 Jun; (423):275-9. PMID: 15232462.
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    78. Durbin BP, Rocke DM. Variance-stabilizing transformations for two-color microarrays. Bioinformatics. 2004 Mar 22; 20(5):660-7. PMID: 15033873.
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    79. Purohit PV, Rocke DM, Viant MR, Woodruff DL. Discrimination models using variance-stabilizing transformation of metabolomic NMR data. OMICS. 2004; 8(2):118-30. PMID: 15268771.
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    80. Geller SC, Gregg JP, Hagerman P, Rocke DM. Transformation and normalization of oligonucleotide microarray data. Bioinformatics. 2003 Sep 22; 19(14):1817-23. PMID: 14512353.
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    81. Rocke DM, Durbin B, Wilson M, Kahn HD. Modeling uncertainty in the measurement of low-level analytes in environmental analysis. Ecotoxicol Environ Saf. 2003 Sep; 56(1):78-92. PMID: 12915142.
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    82. Purohit PV, Rocke DM. Discriminant models for high-throughput proteomics mass spectrometer data. Proteomics. 2003 Sep; 3(9):1699-703. PMID: 12973728.
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    83. Caruso JA, Klaue B, Michalke B, Rocke DM. Group assessment: elemental speciation. Ecotoxicol Environ Saf. 2003 Sep; 56(1):32-44. PMID: 12915138.
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    84. Durbin B, Rocke DM. Estimation of transformation parameters for microarray data. Bioinformatics. 2003 Jul 22; 19(11):1360-7. PMID: 12874047.
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    85. Rocke DM, Durbin B. Approximate variance-stabilizing transformations for gene-expression microarray data. Bioinformatics. 2003 May 22; 19(8):966-72. PMID: 12761059.
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    86. Zhao Y, Chen BP, Miao H, Yuan S, Li YS, Hu Y, Rocke DM, Chien S. Improved significance test for DNA microarray data: temporal effects of shear stress on endothelial genes. Physiol Genomics. 2002 Dec 26; 12(1):1-11. PMID: 12399447.
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    87. Nguyen DV, Rocke DM. Partial least squares proportional hazard regression for application to DNA microarray survival data. Bioinformatics. 2002 Dec; 18(12):1625-32. PMID: 12490447.
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    88. Jones G, Rocke DM. Multivariate survival analysis with doubly-censored data: application to the assessment of Accutane treatment for fibrodysplasia ossificans progressiva. Stat Med. 2002 Sep 15; 21(17):2547-62. PMID: 12205698.
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    89. Nguyen DV, Rocke DM. Multi-class cancer classification via partial least squares with gene expression profiles. Bioinformatics. 2002 Sep; 18(9):1216-26. PMID: 12217913.
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    90. Nguyen DV, Rocke DM. Tumor classification by partial least squares using microarray gene expression data. Bioinformatics. 2002 Jan; 18(1):39-50. PMID: 11836210.
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    91. Durbin BP, Hardin JS, Hawkins DM, Rocke DM. A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics. 2002; 18 Suppl 1:S105-10. PMID: 12169537.
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    92. Jones G, Rocke DM. Analyte identification in multivariate calibration. Biometrics. 2001 Jun; 57(2):571-6. PMID: 11414586.
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    93. Rocke DM, Durbin B. A model for measurement error for gene expression arrays. J Comput Biol. 2001; 8(6):557-69. PMID: 11747612.
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    94. Leistikow BN, Martin DC, Jacobs J, Rocke DM, Noderer K. Smoking as a risk factor for accident death: a meta-analysis of cohort studies. Accid Anal Prev. 2000 May; 32(3):397-405. PMID: 10776858.
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    95. Leistikow BN, Martin DC, Jacobs J, Rocke DM. Smoking as a risk factor for injury death: a meta-analysis of cohort studies. Prev Med. 1998 Nov-Dec; 27(6):871-8. PMID: 9922070.
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    96. Glaser DL, Rocke DM, Kaplan FS. Catastrophic falls in patients who have fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1998 Jan; (346):110-6. PMID: 9577417.
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    97. Kaplan F, Sawyer J, Connors S, Keough K, Shore E, Gannon F, Glaser D, Rocke D, Zasloff M, Folkman J. Urinary basic fibroblast growth factor. A biochemical marker for preosseous fibroproliferative lesions in patients with fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1998 Jan; (346):59-65. PMID: 9577411.
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    98. Zasloff MA, Rocke DM, Crofford LJ, Hahn GV, Kaplan FS. Treatment of patients who have fibrodysplasia ossificans progressiva with isotretinoin. Clin Orthop Relat Res. 1998 Jan; (346):121-9. PMID: 9577419.
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    99. Sawyer JR, Klimkiewicz JJ, Iannotti JP, Rocke DM. Mechanism for superior subluxation of the glenohumeral joint in fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1998 Jan; (346):130-3. PMID: 9577420.
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    100. Jones G, Wortberg M, Kreissig SB, Hammock BD, Rocke DM. Application of the bootstrap to calibration experiments. Anal Chem. 1996 Mar 01; 68(5):763-70. PMID: 8779441.
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    101. Luchetti W, Cohen RB, Hahn GV, Rocke DM, Helpin M, Zasloff M, Kaplan FS. Severe restriction in jaw movement after routine injection of local anesthetic in patients who have fibrodysplasia ossificans progressiva. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 1996 Jan; 81(1):21-5. PMID: 8850477.
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    102. Lanchoney TF, Cohen RB, Rocke DM, Zasloff MA, Kaplan FS. Permanent heterotopic ossification at the injection site after diphtheria-tetanus-pertussis immunizations in children who have fibrodysplasia ossificans progressiva. J Pediatr. 1995 May; 126(5 Pt 1):762-4. PMID: 7752003.
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    103. Kauvar LM, Higgins DL, Villar HO, Sportsman JR, Engqvist-Goldstein A, Bukar R, Bauer KE, Dilley H, Rocke DM. Predicting ligand binding to proteins by affinity fingerprinting. Chem Biol. 1995 Feb; 2(2):107-18. PMID: 9383411.
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    104. Jones G, Wortberg M, Kreissig SB, Bunch DS, Gee SJ, Hammock BD, Rocke DM. Extension of the four-parameter logistic model for ELISA to multianalyte analysis. J Immunol Methods. 1994 Dec 28; 177(1-2):1-7. PMID: 7822815.
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    105. Rocke DM, Zasloff M, Peeper J, Cohen RB, Kaplan FS. Age- and joint-specific risk of initial heterotopic ossification in patients who have fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1994 Apr; (301):243-8. PMID: 8156682.
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    106. Rocke DM. Robustness and balance in the mixed model. Biometrics. 1991 Mar; 47(1):303-9. PMID: 2049504.
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    107. Bunch DS, Rocke DM, Harrison RO. Statistical design of ELISA protocols. J Immunol Methods. 1990 Sep 14; 132(2):247-54. PMID: 2212680.
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    108. Rocke DM. On testing for bioequivalence. Biometrics. 1984 Mar; 40(1):225-30. PMID: 6547355.
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