David Rocke

Title(s)Professor, Public Health Sciences
SchoolSchool of Medicine
AddressMed Sci 1C Bldg.
CA 95616
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Human Keratinocyte Responses to Woodsmoke Chemicals. Chem Res Toxicol. 2024 Apr 10. Karim N, Yang Y, Salemi M, Phinney BS, Durbin-Johnson BP, Rocke DM, Rice RH. PMID: 38598786.
      View in: PubMed   Mentions:
    2. Environmental pro-oxidants induce altered envelope protein profiles in human keratinocytes. Toxicol Sci. 2023 12 21; 197(1):16-26. Lin LW, Durbin-Johnson BP, Rocke DM, Salemi M, Phinney BS, Rice RH. PMID: 37788135; PMCID: PMC10734632.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    3. Convection and extracellular matrix binding control interstitial transport of extracellular vesicles. J Extracell Vesicles. 2023 04; 12(4):e12323. Sariano PA, Mizenko RR, Shirure VS, Brandt AK, Nguyen BB, Nesiri C, Shergill BS, Brostoff T, Rocke DM, Borowsky AD, Carney RP, George SC. PMID: 37073802; PMCID: PMC10114097.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    4. Protein profiling of forehead epidermal corneocytes distinguishes frontal fibrosing from androgenetic alopecia. PLoS One. 2023; 18(3):e0283619. Karim N, Mirmirani P, Durbin-Johnson BP, Rocke DM, Salemi M, Phinney BS, Rice RH. PMID: 37000833; PMCID: PMC10065298.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Witch Nails (Krt90whnl): A spontaneous mouse mutation affecting nail growth and development. PLoS One. 2022; 17(11):e0277284. Sundberg JP, Galantino-Homer H, Fairfield H, Ward-Bailey PF, Harris BS, Berry M, Pratt CH, Gott NE, Bechtold LS, Kaplan PR, Durbin-Johnson BP, Rocke DM, Rice RH. PMID: 36374931; PMCID: PMC9662738.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    6. Elucidation of familial relationships using hair shaft proteomics. Forensic Sci Int Genet. 2021 09; 54:102564. Karim N, Plott TJ, Durbin-Johnson BP, Rocke DM, Salemi M, Phinney BS, Goecker ZC, Pieterse MJM, Parker GJ, Rice RH. PMID: 34315035.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    7. Off-on-off-on use of imatinib in three children with fibrodysplasia ossificans progressiva. Bone. 2021 09; 150:116016. Kaplan FS, Teachey DT, Andolina JR, Siegel DM, Mancilla EE, Hsiao EC, Al Mukaddam M, Rocke DM, Pignolo RJ. PMID: 34022457.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    8. Age-Related Changes in Hair Shaft Protein Profiling and Genetically Variant Peptides. Forensic Sci Int Genet. 2020 07; 47:102309. Plott TJ, Karim N, Durbin-Johnson BP, Swift DP, Scott Youngquist R, Salemi M, Phinney BS, Rocke DM, Davis MG, Parker GJ, Rice RH. PMID: 32485593; PMCID: PMC7388652.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    9. Collagen Turnover in Relation to Risk Factors and Hemodynamics in Human Intracranial Aneurysms. Stroke. 2020 05; 51(5):1624-1628. Hackenberg KAM, Rajabzadeh-Oghaz H, Dreier R, Buchholz BA, Navid A, Rocke DM, Abdulazim A, Hänggi D, Siddiqui A, Macdonald RL, Meng H, Etminan N. PMID: 32192404; PMCID: PMC7340076.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    10. Deducing signaling pathways from parallel actions of arsenite and antimonite in human epidermal keratinocytes. Sci Rep. 2020 02 19; 10(1):2890. Phillips MA, Cánovas A, Rea MA, Islas-Trejo A, Medrano JF, Durbin-Johnson B, Rocke DM, Rice RH. PMID: 32076005; PMCID: PMC7031270.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    11. Speeding Up Percolator. J Proteome Res. 2019 09 06; 18(9):3353-3359. Halloran JT, Zhang H, Kara K, Renggli C, The M, Zhang C, Rocke DM, Käll L, Noble WS. PMID: 31407580; PMCID: PMC6884961.
      View in: PubMed   Mentions: 3     Fields:    
    12. Cellular versus acellular matrix devices in the treatment of diabetic foot ulcers: Interim results of a comparative efficacy randomized controlled trial. J Tissue Eng Regen Med. 2019 08; 13(8):1430-1437. Tchanque-Fossuo CN, Dahle SE, Lev-Tov H, West KIM, Li CS, Rocke DM, Isseroff RR. PMID: 31070860.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    13. Proteomic manifestations of genetic defects in autosomal recessive congenital ichthyosis. J Proteomics. 2019 06 15; 201:104-109. Karim N, Durbin-Johnson B, Rocke DM, Salemi M, Phinney BS, Naeem M, Rice RH. PMID: 30978464.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCTClinical Trials
    14. Erratum. Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes. Diabetes Care 2018;41:2361-2369. Diabetes Care. 2019 Jun; 42(6):1155. Vaisar T, Durbin-Johnson B, Whitlock K, Babenko I, Mehrotra R, Rocke DM, Afkarian M. PMID: 30936112; PMCID: PMC6609947.
      View in: PubMed   Mentions:    Fields:    
    15. Comparison of protein expression levels and proteomically-inferred genotypes using human hair from different body sites. Forensic Sci Int Genet. 2019 07; 41:19-23. Milan JA, Wu PW, Salemi MR, Durbin-Johnson BP, Rocke DM, Phinney BS, Rice RH, Parker GJ. PMID: 30939338.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    16. Sex estimation using sexually dimorphic amelogenin protein fragments in human enamel. Journal of Archaeological Science. 2019 Jan 1; 101(Nature 537 2016):169-180. Parker PG, Yip YJ, Eerkens EJ, Salemi SM, Durbin-Johnson DB, Kiesow KC, Haas HR, Buikstra BJ, Klaus KH, Regan RL, Rocke RD, Phinney PB. .
      View in: Publisher Site   Mentions:
    17. Learning Concave Conditional Likelihood Models for Improved Analysis of Tandem Mass Spectra. Adv Neural Inf Process Syst. 2018 Dec; 31:5420-5430. Halloran JT, Rocke DM. PMID: 31745383; PMCID: PMC6863516.
      View in: PubMed   Mentions: 1  
    18. Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes. Diabetes Care. 2018 11; 41(11):2361-2369. Vaisar T, Durbin-Johnson B, Whitlock K, Babenko I, Mehrotra R, Rocke DM, Afkarian M. PMID: 30150236; PMCID: PMC6196831.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    19. Corneocyte proteomics: Applications to skin biology and dermatology. Exp Dermatol. 2018 08; 27(8):931-938. Rice RH, Durbin-Johnson BP, Mann SM, Salemi M, Urayama S, Rocke DM, Phinney BS, Sundberg JP. PMID: 30033667; PMCID: PMC6415749.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    20. A Matter of Time: Faster Percolator Analysis via Efficient SVM Learning for Large-Scale Proteomics. J Proteome Res. 2018 05 04; 17(5):1978-1982. Halloran JT, Rocke DM. PMID: 29607643; PMCID: PMC6420878.
      View in: PubMed   Mentions: 5     Fields:    
    21. The Beta 2 Adrenergic Receptor Antagonist Timolol Improves Healing of Combined Burn and Radiation Wounds. Radiat Res. 2018 04; 189(4):441-445. Albrecht H, Yang HY, Kiuru M, Maksaereekul S, Durbin-Johnson B, Wong MS, Stevenson TR, Rocke DM, Isseroff RR. PMID: 29373090; PMCID: PMC5890811.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCellsPHPublic Health
    22. Prevalence and risk factors for kidney stones in fibrodysplasia ossificans progressiva. Bone. 2018 04; 109:120-123. Gupta RR, Delai PLR, Glaser DL, Rocke DM, Al Mukaddam M, Pignolo RJ, Kaplan FS. PMID: 29241827.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    23. Gradients of Generative Models for Improved Discriminative Analysis of Tandem Mass Spectra. Adv Neural Inf Process Syst. 2017 Dec; 30:5724-5733. Halloran JT, Rocke DM. PMID: 31745382; PMCID: PMC6863505.
      View in: PubMed   Mentions: 5  
    24. Glucose-lowering effect of whey protein depends upon clinical characteristics of patients with type 2 diabetes. BMJ Open Diabetes Res Care. 2017; 5(1):e000420. Almario RU, Buchan WM, Rocke DM, Karakas SE. PMID: 28761664; PMCID: PMC5530249.
      View in: PubMed   Mentions: 12  
    25. Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides. Proteomics. 2017 Jul; 17(13-14). Wu PW, Mason KE, Durbin-Johnson BP, Salemi M, Phinney BS, Rocke DM, Parker GJ, Rice RH. PMID: 28544375; PMCID: PMC5540574.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    26. Proteomic profiling of Pachyonychia congenita plantar callus. J Proteomics. 2017 08 08; 165:132-137. Rice RH, Durbin-Johnson BP, Salemi M, Schwartz ME, Rocke DM, Phinney BS. PMID: 28648685; PMCID: PMC5567846.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    27. Joint-specific risk of impaired function in fibrodysplasia ossificans progressiva (FOP). Bone. 2018 04; 109:124-133. Pignolo RJ, Durbin-Johnson BP, Rocke DM, Kaplan FS. PMID: 28627475.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    28. Variance-component-based nested logit specifications: Improved formulation, and practical microsimulation of random disturbance terms. Journal of Choice Modelling. 2016 Dec 1; 21:30-35. Bunch BD, Rocke RD. .
      View in: Publisher Site   Mentions:
    29. Myasthenia gravis exacerbation after discontinuing mycophenolate: A single-center cohort study. Neurology. 2016 11 08; 87(19):2067-2068. Dimachkie MM, Abuzinadah AR, Barohn RJ, Oskarsson B, Rocke DM, Dengel K, Richman DP. PMID: 27821567.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    30. Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome. PLoS One. 2016; 11(9):e0160653. Parker GJ, Leppert T, Anex DS, Hilmer JK, Matsunami N, Baird L, Stevens J, Parsawar K, Durbin-Johnson BP, Rocke DM, Nelson C, Fairbanks DJ, Wilson AS, Rice RH, Woodward SR, Bothner B, Hart BR, Leppert M. PMID: 27603779; PMCID: PMC5014411.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    31. Proteomic Analysis of Loricrin Knockout Mouse Epidermis. J Proteome Res. 2016 08 05; 15(8):2560-6. Rice RH, Durbin-Johnson BP, Ishitsuka Y, Salemi M, Phinney BS, Rocke DM, Roop DR. PMID: 27418529.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    32. Best Practices for Biostatistical Consultation and Collaboration in Academic Health Centers. Am Stat. 2016; 70(2):187-194. Perkins SM, Bacchetti P, Davey CS, Lindsell CJ, Mazumdar M, Oster RA, Peduzzi PN, Rocke DM, Rudser KD, Kim M. PMID: 27777443; PMCID: PMC5074551.
      View in: PubMed   Mentions: 12  
    33. Myasthenia gravis exacerbation after discontinuing mycophenolate: A single-center cohort study. Neurology. 2016 Mar 22; 86(12):1159-63. Oskarsson B, Rocke DM, Dengel K, Richman DP. PMID: 26850977; PMCID: PMC4820129.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    34. The Natural History of Flare-Ups in Fibrodysplasia Ossificans Progressiva (FOP): A Comprehensive Global Assessment. J Bone Miner Res. 2016 Mar; 31(3):650-6. Pignolo RJ, Bedford-Gay C, Liljesthröm M, Durbin-Johnson BP, Shore EM, Rocke DM, Kaplan FS. PMID: 27025942; PMCID: PMC4829946.
      View in: PubMed   Mentions: 89     Fields:    Translation:Humans
    35. The Serum Immunoglobulin G Glycosylation Signature of Gastric Cancer. EuPA Open Proteom. 2015 Mar 01; 6:1-9. Ruhaak LR, Barkauskas DA, Torres J, Cooke CL, Wu LD, Stroble C, Ozcan S, Williams CC, Camorlinga M, Rocke DM, Lebrilla CB, Solnick JV. PMID: 25685702; PMCID: PMC4322429.
      View in: PubMed   Mentions: 25  
    36. Targeted therapy with MXD3 siRNA, anti-CD22 antibody and nanoparticles for precursor B-cell acute lymphoblastic leukaemia. Br J Haematol. 2014 Nov; 167(4):487-99. Satake N, Duong C, Chen C, Barisone GA, Diaz E, Tuscano J, Rocke DM, Nolta J, Nitin N. PMID: 25196579; PMCID: PMC4212003.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimals
    37. Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis. PeerJ. 2014; 2:e506. Laatsch CN, Durbin-Johnson BP, Rocke DM, Mukwana S, Newland AB, Flagler MJ, Davis MG, Eigenheer RA, Phinney BS, Rice RH. PMID: 25165623; PMCID: PMC4137660.
      View in: PubMed   Mentions: 17     Fields:    
    38. Pharmacokinetic and pharmacodynamic analysis comparing diverse effects of detomidine, medetomidine, and dexmedetomidine in the horse: a population analysis. J Vet Pharmacol Ther. 2015 Feb; 38(1):24-34. Grimsrud KN, Ait-Oudhia S, Durbin-Johnson BP, Rocke DM, Mama KR, Rezende ML, Stanley SD, Jusko WJ. PMID: 25073816; PMCID: PMC4286451.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    39. Differential network analyses of Alzheimer's disease identify early events in Alzheimer's disease pathology. Int J Alzheimers Dis. 2014; 2014:721453. Xia J, Rocke DM, Perry G, Ray M. PMID: 25147748; PMCID: PMC4132486.
      View in: PubMed   Mentions: 6  
    40. Transcriptome and metabolome analysis of citrus fruit to elucidate puffing disorder. Plant Sci. 2014 Mar; 217-218:87-98. Ibáñez AM, Martinelli F, Reagan RL, Uratsu SL, Vo A, Tinoco MA, Phu ML, Chen Y, Rocke DM, Dandekar AM. PMID: 24467900.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    41. Serum glycan signatures of gastric cancer. Cancer Prev Res (Phila). 2014 Feb; 7(2):226-35. Ozcan S, Barkauskas DA, Renee Ruhaak L, Torres J, Cooke CL, An HJ, Hua S, Williams CC, Dimapasoc LM, Han Kim J, Camorlinga-Ponce M, Rocke D, Lebrilla CB, Solnick JV. PMID: 24327722; PMCID: PMC3946197.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    42. Distinguishing ichthyoses by protein profiling. PLoS One. 2013; 8(10):e75355. Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Schmuth M, Gruber R. PMID: 24130705; PMCID: PMC3793978.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    43. Stability of miRNA in human urine supports its biomarker potential. Biomark Med. 2013 Aug; 7(4):623-31. Mall C, Rocke DM, Durbin-Johnson B, Weiss RH. PMID: 23905899; PMCID: PMC3885156.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansCells
    44. Carbon turnover in the water-soluble protein of the adult human lens. Mol Vis. 2013; 19:463-75. Stewart DN, Lango J, Nambiar KP, Falso MJ, FitzGerald PG, Rocke DM, Hammock BD, Buchholz BA. PMID: 23441119; PMCID: PMC3580966.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    45. Chicken corneocyte cross-linked proteome. J Proteome Res. 2013 Feb 01; 12(2):771-6. Rice RH, Winters BR, Durbin-Johnson BP, Rocke DM. PMID: 23256538; PMCID: PMC3569041.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    46. Differentiating inbred mouse strains from each other and those with single gene mutations using hair proteomics. PLoS One. 2012; 7(12):e51956. Rice RH, Bradshaw KM, Durbin-Johnson BP, Rocke DM, Eigenheer RA, Phinney BS, Sundberg JP. PMID: 23251662; PMCID: PMC3522583.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    47. Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation. J Radiat Res. 2012 Nov 01; 53(6):860-75. Yunis R, Albrecht H, Kalanetra KM, Wu S, Rocke DM. PMID: 22915785; PMCID: PMC3483859.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    48. Neurological symptoms in individuals with fibrodysplasia ossificans progressiva. J Neurol. 2012 Dec; 259(12):2636-43. Kitterman JA, Strober JB, Kan L, Rocke DM, Cali A, Peeper J, Snow J, Delai PL, Morhart R, Pignolo RJ, Shore EM, Kaplan FS. PMID: 22752062; PMCID: PMC3523705.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    49. Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks. BMC Genomics. 2012 May 17; 13:190. Ray M, Yunis R, Chen X, Rocke DM. PMID: 22594378; PMCID: PMC3443446.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    50. Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts. PLoS One. 2012; 7(2):e29998. Fritz HM, Buchholz KR, Chen X, Durbin-Johnson B, Rocke DM, Conrad PA, Boothroyd JC. PMID: 22347997; PMCID: PMC3278417.
      View in: PubMed   Mentions: 91     Fields:    Translation:AnimalsCells
    51. Impact of public reporting of coronary artery bypass graft surgery performance data on market share, mortality, and patient selection. Med Care. 2011 Dec; 49(12):1118-25. Romano PS, Marcin JP, Dai JJ, Yang XD, Kravitz RL, Rocke DM, Dharmar M, Li Z. PMID: 22002641.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    52. Transcriptional response of ex vivo human skin to ionizing radiation: comparison between low- and high-dose effects. Radiat Res. 2012 Jan; 177(1):69-83. Albrecht H, Durbin-Johnson B, Yunis R, Kalanetra KM, Wu S, Chen R, Stevenson TR, Rocke DM. PMID: 22029842; PMCID: PMC3549263.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    53. Identification of tissue cyst wall components by transcriptome analysis of in vivo and in vitro Toxoplasma gondii bradyzoites. Eukaryot Cell. 2011 Dec; 10(12):1637-47. Buchholz KR, Fritz HM, Chen X, Durbin-Johnson B, Rocke DM, Ferguson DJ, Conrad PA, Boothroyd JC. PMID: 22021236; PMCID: PMC3232729.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimalsCells
    54. Expression of CD44s and CD44v6 in lung cancer and their correlation with prognostic factors. Int J Biol Markers. 2011 Jan-Mar; 26(1):50-7. Afify AM, Tate S, Durbin-Johnson B, Rocke DM, Konia T. PMID: 21279958.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    55. A Method to Detect Differential Gene expression in Cross-Species Hybridization Experiments at Gene and Probe Level. Biomed Inform Insights. 2010; 3:1-10. Chen Y, Wu R, Felton J, Rocke DM, Chakicherla A. PMID: 20798791; PMCID: PMC2928260.
      View in: PubMed   Mentions: 1  
    56. Early mortality and cardiorespiratory failure in patients with fibrodysplasia ossificans progressiva. J Bone Joint Surg Am. 2010 Mar; 92(3):686-91. Kaplan FS, Zasloff MA, Kitterman JA, Shore EM, Hong CC, Rocke DM. PMID: 20194327; PMCID: PMC2827822.
      View in: PubMed   Mentions: 85     Fields:    Translation:Humans
    57. A general-purpose baseline estimation algorithm for spectroscopic data. Anal Chim Acta. 2010 Jan 11; 657(2):191-7. Barkauskas DA, Rocke DM. PMID: 20005331; PMCID: PMC2806822.
      View in: PubMed   Mentions: 6     Fields:    
    58. Neonatal salivary analysis reveals global developmental gene expression changes in the premature infant. Clin Chem. 2010 Mar; 56(3):409-16. Maron JL, Johnson KL, Rocke DM, Cohen MG, Liley AJ, Bianchi DW. PMID: 19959617; PMCID: PMC2853178.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    59. Clinical-dosimetric analysis of measures of dysphagia including gastrostomy-tube dependence among head and neck cancer patients treated definitively by intensity-modulated radiotherapy with concurrent chemotherapy. Radiat Oncol. 2009 Nov 12; 4:52. Li B, Li D, Lau DH, Farwell DG, Luu Q, Rocke DM, Newman K, Courquin J, Purdy JA, Chen AM. PMID: 19909531; PMCID: PMC2785826.
      View in: PubMed   Mentions: 32     Fields:    Translation:Humans
    60. Bridging the gap between systems biology and medicine. Genome Med. 2009 Sep 29; 1(9):88. Clermont G, Auffray C, Moreau Y, Rocke DM, Dalevi D, Dubhashi D, Marshall DR, Raasch P, Dehne F, Provero P, Tegner J, Aronow BJ, Langston MA, Benson M. PMID: 19754960; PMCID: PMC2768995.
      View in: PubMed   Mentions: 22     Fields:    
    61. Gene regulation in parthenocarpic tomato fruit. J Exp Bot. 2009; 60(13):3873-90. Martinelli F, Uratsu SL, Reagan RL, Chen Y, Tricoli D, Fiehn O, Rocke DM, Gasser CS, Dandekar AM. PMID: 19700496; PMCID: PMC2736898.
      View in: PubMed   Mentions: 29     Fields:    Translation:Animals
    62. Analysis of MALDI FT-ICR mass spectrometry data: a time series approach. Anal Chim Acta. 2009 Aug 26; 648(2):207-14. Barkauskas DA, Kronewitter SR, Lebrilla CB, Rocke DM. PMID: 19646586; PMCID: PMC2772212.
      View in: PubMed   Mentions: 2     Fields:    
    63. Proteomic analysis of low dose arsenic and ionizing radiation exposure on keratinocytes. Proteomics. 2009 Apr; 9(7):1925-38. Berglund SR, Santana AR, Li D, Rice RH, Rocke DM, Goldberg Z. PMID: 19294697; PMCID: PMC2666104.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    64. Distinguishing mouse strains by proteomic analysis of pelage hair. J Invest Dermatol. 2009 Sep; 129(9):2120-5. Rice RH, Rocke DM, Tsai HS, Silva KA, Lee YJ, Sundberg JP. PMID: 19295613; PMCID: PMC2853740.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    65. Papers on normalization, variable selection, classification or clustering of microarray data. Bioinformatics. 2009 Mar 15; 25(6):701-702. Rocke RD, Ideker IT, Troyanskaya TO, Quackenbush QJ, Dopazo DJ. .
      View in: Publisher Site   Mentions:
    66. Examining executive functioning in children with autism spectrum disorder, attention deficit hyperactivity disorder and typical development. Psychiatry Res. 2009 Apr 30; 166(2-3):210-22. Corbett BA, Constantine LJ, Hendren R, Rocke D, Ozonoff S. PMID: 19285351; PMCID: PMC2683039.
      View in: PubMed   Mentions: 181     Fields:    Translation:Humans
    67. IGF-1 does not moderate the time-dependent transcriptional patterns of key homeostatic genes induced by sustained compression of bovine cartilage. Osteoarthritis Cartilage. 2009 Jul; 17(7):944-52. Wheeler CA, Jafarzadeh SR, Rocke DM, Grodzinsky AJ. PMID: 19250984; PMCID: PMC2752631.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    68. Stress-mediated increases in systemic and local epinephrine impair skin wound healing: potential new indication for beta blockers. PLoS Med. 2009 Jan 13; 6(1):e12. Sivamani RK, Pullar CE, Manabat-Hidalgo CG, Rocke DM, Carlsen RC, Greenhalgh DG, Isseroff RR. PMID: 19143471; PMCID: PMC2621262.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansCells
    69. Survival enhancing indications for coronary artery bypass graft surgery in California. BMC Health Serv Res. 2008 Dec 16; 8:257. Li Z, Kravitz RL, Marcin JP, Romano PS, Rocke DM, Denton TA, Brindis RG, Dai J, Amsterdam EA. PMID: 19087305; PMCID: PMC2621199.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    70. Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data. Bioinformatics. 2009 Jan 15; 25(2):251-7. Barkauskas DA, An HJ, Kronewitter SR, de Leoz ML, Chew HK, de Vere White RW, Leiserowitz GS, Miyamoto S, Lebrilla CB, Rocke DM. PMID: 19073586; PMCID: PMC2639011.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    71. Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One. 2008 Oct 06; 3(10):e3337. Jung KH, Dardick C, Bartley LE, Cao P, Phetsom J, Canlas P, Seo YS, Shultz M, Ouyang S, Yuan Q, Frank BC, Ly E, Zheng L, Jia Y, Hsia AP, An K, Chou HH, Rocke D, Lee GC, Schnable PS, An G, Buell CR, Ronald PC. PMID: 18836531; PMCID: PMC2556097.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    72. Baseline correction for NMR spectroscopic metabolomics data analysis. BMC Bioinformatics. 2008 Jul 29; 9:324. Xi Y, Rocke DM. PMID: 18664284; PMCID: PMC2516527.
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    73. Assessing probe-specific dye and slide biases in two-color microarray data. BMC Bioinformatics. 2008 Jul 19; 9:314. Lu R, Lee GC, Shultz M, Dardick C, Jung K, Phetsom J, Jia Y, Rice RH, Goldberg Z, Schnable PS, Ronald P, Rocke DM. PMID: 18638416; PMCID: PMC2496918.
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    74. Effect of prophylactic transluminal balloon angioplasty on cerebral vasospasm and outcome in patients with Fisher grade III subarachnoid hemorrhage: results of a phase II multicenter, randomized, clinical trial. Stroke. 2008 Jun; 39(6):1759-65. Zwienenberg-Lee M, Hartman J, Rudisill N, Madden LK, Smith K, Eskridge J, Newell D, Verweij B, Bullock MR, Baker A, Coplin W, Mericle R, Dai J, Rocke D, Muizelaar JP, Balloon Prophylaxis for Aneurysmal Vasospasm (BPAV) Study Group. PMID: 18420953.
      View in: PubMed   Mentions: 47     Fields:    Translation:HumansCTClinical Trials
    75. The CABG surgery volume-outcome relationship: temporal trends and selection effects in California, 1998-2004. Health Serv Res. 2008 Feb; 43(1 Pt 1):174-92. Marcin JP, Li Z, Kravitz RL, Dai JJ, Rocke DM, Romano PS. PMID: 18211524; PMCID: PMC2323152.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    76. On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve. BMC Bioinformatics. 2007 Dec 12; 8:477. Ye J, Liu H, Kirmiz C, Lebrilla CB, Rocke DM. PMID: 18076765; PMCID: PMC2211327.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    77. Transient genome-wide transcriptional response to low-dose ionizing radiation in vivo in humans. Int J Radiat Oncol Biol Phys. 2008 Jan 01; 70(1):229-34. Berglund SR, Rocke DM, Dai J, Schwietert CW, Santana A, Stern RL, Lehmann J, Hartmann Siantar CL, Goldberg Z. PMID: 17996396; PMCID: PMC2754180.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    78. Is the Good News About Compliance Good News About Cooperation? (1996). . 2007 Jan 1; 92-112. Downs DG, Rocke RD, Barsoom BP. .
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    79. A proteomic study of serum from children with autism showing differential expression of apolipoproteins and complement proteins. Mol Psychiatry. 2007 Mar; 12(3):292-306. Corbett BA, Kantor AB, Schulman H, Walker WL, Lit L, Ashwood P, Rocke DM, Sharp FR. PMID: 17189958.
      View in: PubMed   Mentions: 72     Fields:    Translation:Humans
    80. International milk genomics consortium. Trends in Food Science & Technology. 2006 Dec 1; 17(12):656-661. German GJ, Schanbacher SF, Lönnerdal LB, Medrano MJ, McGuire MM, McManaman MJ, Rocke RD, Smith ST, Neville NM, Donnelly DP, Lange LM, Ward WR. .
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    81. A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins. J Proteome Res. 2006 Oct; 5(10):2800-8. An HJ, Tillinghast JS, Woodruff DL, Rocke DM, Lebrilla CB. PMID: 17022651.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    82. Human in vivo dose-response to controlled, low-dose low linear energy transfer ionizing radiation exposure. Clin Cancer Res. 2006 Jun 15; 12(12):3723-9. Goldberg Z, Rocke DM, Schwietert C, Berglund SR, Santana A, Jones A, Lehmann J, Stern R, Lu R, Hartmann Siantar C. PMID: 16778099.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    83. Spontaneous immortalization of human epidermal cells with naturally elevated telomerase. J Invest Dermatol. 2006 Nov; 126(11):2507-15. Rea MA, Zhou L, Qin Q, Barrandon Y, Easley KW, Gungner SF, Phillips MA, Holland WS, Gumerlock PH, Rocke DM, Rice RH. PMID: 16778798.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    84. Dimension reduction for classification with gene expression microarray data. Stat Appl Genet Mol Biol. 2006; 5:Article6. Dai JJ, Lieu L, Rocke D. PMID: 16646870.
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    85. Dosimetry for quantitative analysis of the effects of low-dose ionizing radiation in radiation therapy patients. Radiat Res. 2006 Feb; 165(2):240-7. Lehmann J, Stern RL, Daly TP, Rocke DM, Schwietert CW, Jones GE, Arnold ML, Siantar CL, Goldberg Z. PMID: 16435922.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansPHPublic Health
    86. The Distribution of Robust Distances. Journal of Computational and Graphical Statistics. 2005 Dec 1; 14(4):928-946. Hardin HJ, Rocke RD. .
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    87. Iatrogenic harm caused by diagnostic errors in fibrodysplasia ossificans progressiva. Pediatrics. 2005 Nov; 116(5):e654-61. Kitterman JA, Kantanie S, Rocke DM, Kaplan FS. PMID: 16230464.
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    88. Temporal and anatomic relationship between virus replication and cytokine gene expression after vaginal simian immunodeficiency virus infection. J Virol. 2005 Oct; 79(19):12164-72. Abel K, Rocke DM, Chohan B, Fritts L, Miller CJ. PMID: 16160143; PMCID: PMC1211549.
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    89. An expression index for Affymetrix GeneChips based on the generalized logarithm. Bioinformatics. 2005 Nov 01; 21(21):3983-9. Zhou L, Rocke DM. PMID: 16159924.
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    90. A method for detection of differential gene expression in the presence of inter-individual variability in response. Bioinformatics. 2005 Nov 01; 21(21):3990-2. Rocke DM, Goldberg Z, Schweitert C, Santana A. PMID: 16159922.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    91. A robust testing procedure for the equality of covariance matrices. Computational Statistics & Data Analysis. 2005 Jun 1; 49(3):863-874. Aslam AS, Rocke RD. .
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    92. Design and analysis of experiments with high throughput biological assay data. Semin Cell Dev Biol. 2004 Dec; 15(6):703-13. Rocke DM. PMID: 15561590.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimals
    93. Influenza-like viral illnesses and flare-ups of fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 2004 Jun; (423):275-9. Scarlett RF, Rocke DM, Kantanie S, Patel JB, Shore EM, Kaplan FS. PMID: 15232462.
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    94. On partial least squares dimension reduction for microarray-based classification: a simulation study. Computational Statistics & Data Analysis. 2004 Jun 1; 46(3):407-425. Nguyen ND, Rocke RD. .
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    95. Classification of Contamination in Salt Marsh Plants Using Hyperspectral Reflectance. IEEE Transactions on Geoscience and Remote Sensing. 2004 May 1; 42(5):1088-1095. Wilson WM, Ustin US, Rocke RD. .
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    96. Detection limits and goodness-of-fit measures for the two-component model of chemical analytical error. Analytica Chimica Acta. 2004 May 1; 509(2):197-208. Wilson WM, Rocke RD, Durbin DB, Kahn KH. .
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    97. Variance-stabilizing transformations for two-color microarrays. Bioinformatics. 2004 Mar 22; 20(5):660-7. Durbin BP, Rocke DM. PMID: 15033873.
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    98. Discrimination models using variance-stabilizing transformation of metabolomic NMR data. OMICS. 2004; 8(2):118-30. Purohit PV, Rocke DM, Viant MR, Woodruff DL. PMID: 15268771.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    99. Outlier detection in the multiple cluster setting using the minimum covariance determinant estimator. Computational Statistics & Data Analysis. 2004 Jan 1; 44(4):625-638. Hardin HJ, Rocke RD. .
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    100. Transformation and normalization of oligonucleotide microarray data. Bioinformatics. 2003 Sep 22; 19(14):1817-23. Geller SC, Gregg JP, Hagerman P, Rocke DM. PMID: 14512353.
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    101. Modeling uncertainty in the measurement of low-level analytes in environmental analysis. Ecotoxicol Environ Saf. 2003 Sep; 56(1):78-92. Rocke DM, Durbin B, Wilson M, Kahn HD. PMID: 12915142.
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    102. Discriminant models for high-throughput proteomics mass spectrometer data. Proteomics. 2003 Sep; 3(9):1699-703. Purohit PV, Rocke DM. PMID: 12973728.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    103. Group assessment: elemental speciation. Ecotoxicol Environ Saf. 2003 Sep; 56(1):32-44. Caruso JA, Klaue B, Michalke B, Rocke DM. PMID: 12915138.
      View in: PubMed   Mentions: 3     Fields:    Translation:PHPublic Health
    104. Estimation of transformation parameters for microarray data. Bioinformatics. 2003 Jul 22; 19(11):1360-7. Durbin B, Rocke DM. PMID: 12874047.
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    105. Approximate variance-stabilizing transformations for gene-expression microarray data. Bioinformatics. 2003 May 22; 19(8):966-72. Rocke DM, Durbin B. PMID: 12761059.
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    106. Sampling and Subsampling for Cluster Analysis in Data Mining: With Applications to Sky Survey Data. Data Mining and Knowledge Discovery. 2003 Apr 1; 7(2):215-232. Rocke RD, Dai DJ. .
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    107. Improved significance test for DNA microarray data: temporal effects of shear stress on endothelial genes. Physiol Genomics. 2002 Dec 26; 12(1):1-11. Zhao Y, Chen BP, Miao H, Yuan S, Li YS, Hu Y, Rocke DM, Chien S. PMID: 12399447.
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    108. Partial least squares proportional hazard regression for application to DNA microarray survival data. Bioinformatics. 2002 Dec; 18(12):1625-32. Nguyen DV, Rocke DM. PMID: 12490447.
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    109. Multivariate survival analysis with doubly-censored data: application to the assessment of Accutane treatment for fibrodysplasia ossificans progressiva. Stat Med. 2002 Sep 15; 21(17):2547-62. Jones G, Rocke DM. PMID: 12205698.
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    110. Multi-class cancer classification via partial least squares with gene expression profiles. Bioinformatics. 2002 Sep; 18(9):1216-26. Nguyen DV, Rocke DM. PMID: 12217913.
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    111. Tumor classification by partial least squares using microarray gene expression data. Bioinformatics. 2002 Jan; 18(1):39-50. Nguyen DV, Rocke DM. PMID: 11836210.
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    112. A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics. 2002; 18 Suppl 1:S105-10. Durbin BP, Hardin JS, Hawkins DM, Rocke DM. PMID: 12169537.
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    113. Analyte identification in multivariate calibration. Biometrics. 2001 Jun; 57(2):571-6. Jones G, Rocke DM. PMID: 11414586.
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    114. A model for measurement error for gene expression arrays. J Comput Biol. 2001; 8(6):557-69. Rocke DM, Durbin B. PMID: 11747612.
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    115. Smoking as a risk factor for accident death: a meta-analysis of cohort studies. Accid Anal Prev. 2000 May; 32(3):397-405. Leistikow BN, Martin DC, Jacobs J, Rocke DM, Noderer K. PMID: 10776858.
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    116. A GIS-based approach to spatial allocation of area source solvent emissions. Environmental Modelling & Software. 2000 Mar 1; 15(3):293-302. Dai DJ, Rocke RD. .
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    117. Some computational issues in cluster analysis with no a priori metric. Computational Statistics & Data Analysis. 1999 Jul 1; 31(1):1-11. Coleman CD, Dong DX, Hardin HJ, Rocke RD, Woodruff WD. .
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    118. Smoking as a risk factor for injury death: a meta-analysis of cohort studies. Prev Med. 1998 Nov-Dec; 27(6):871-8. Leistikow BN, Martin DC, Jacobs J, Rocke DM. PMID: 9922070.
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    119. Catastrophic falls in patients who have fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1998 Jan; (346):110-6. Glaser DL, Rocke DM, Kaplan FS. PMID: 9577417.
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    120. Urinary basic fibroblast growth factor. A biochemical marker for preosseous fibroproliferative lesions in patients with fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1998 Jan; (346):59-65. Kaplan F, Sawyer J, Connors S, Keough K, Shore E, Gannon F, Glaser D, Rocke D, Zasloff M, Folkman J. PMID: 9577411.
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    121. Treatment of patients who have fibrodysplasia ossificans progressiva with isotretinoin. Clin Orthop Relat Res. 1998 Jan; (346):121-9. Zasloff MA, Rocke DM, Crofford LJ, Hahn GV, Kaplan FS. PMID: 9577419.
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    122. Mechanism for superior subluxation of the glenohumeral joint in fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1998 Jan; (346):130-3. Sawyer JR, Klimkiewicz JJ, Iannotti JP, Rocke DM. PMID: 9577420.
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    123. A procedure for the immunoanalysis of samples containing one or more members of a group of cross-reacting analytes. Analytica Chimica Acta. 1996 Dec 1; 336(1-3):175-183. Jones JG, Wortberg WM, Hammock HB, Rocke RD. .
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    124. Application of the bootstrap to calibration experiments. Anal Chem. 1996 Mar 01; 68(5):763-70. Jones G, Wortberg M, Kreissig SB, Hammock BD, Rocke DM. PMID: 8779441.
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    125. Severe restriction in jaw movement after routine injection of local anesthetic in patients who have fibrodysplasia ossificans progressiva. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 1996 Jan; 81(1):21-5. Luchetti W, Cohen RB, Hahn GV, Rocke DM, Helpin M, Zasloff M, Kaplan FS. PMID: 8850477.
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    126. Sources of experimental variation in calibration curves for enzyme-linked immunosorbent assay. Analytica Chimica Acta. 1995 Sep 1; 313(3):197-207. Jones JG, Wortberg WM, Kreissig KS, Hammock HB, Rocke RD. .
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    127. A Two-Component Model for Measurement Error in Analytical Chemistry. Technometrics. 1995 May 1; 37(2):176-184. Rocke RD, Lorenzato LS. .
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    128. Permanent heterotopic ossification at the injection site after diphtheria-tetanus-pertussis immunizations in children who have fibrodysplasia ossificans progressiva. J Pediatr. 1995 May; 126(5 Pt 1):762-4. Lanchoney TF, Cohen RB, Rocke DM, Zasloff MA, Kaplan FS. PMID: 7752003.
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    129. An immunoarray for the simultaneous determination of multiple triazine herbicides. Analytica Chimica Acta. 1995 Apr 1; 304(3):339-352. Wortberg WM, Kreissig KS, Jones JG, Rocke RD, Hammock HB. .
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    130. Predicting ligand binding to proteins by affinity fingerprinting. Chem Biol. 1995 Feb; 2(2):107-18. Kauvar LM, Higgins DL, Villar HO, Sportsman JR, Engqvist-Goldstein A, Bukar R, Bauer KE, Dilley H, Rocke DM. PMID: 9383411.
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    131. Extension of the four-parameter logistic model for ELISA to multianalyte analysis. J Immunol Methods. 1994 Dec 28; 177(1-2):1-7. Jones G, Wortberg M, Kreissig SB, Bunch DS, Gee SJ, Hammock BD, Rocke DM. PMID: 7822815.
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    132. Computable Robust Estimation of Multivariate Location and Shape in High Dimension Using Compound Estimators. Journal of the American Statistical Association. 1994 Sep 1; 89(427):888-896. Woodruff WD, Rocke RD. .
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    133. Age- and joint-specific risk of initial heterotopic ossification in patients who have fibrodysplasia ossificans progressiva. Clin Orthop Relat Res. 1994 Apr; (301):243-8. Rocke DM, Zasloff M, Peeper J, Cohen RB, Kaplan FS. PMID: 8156682.
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    134. Almost-exact parametric bootstrap calculation via the saddlepoint approximation. Computational Statistics & Data Analysis. 1993 May 1; 15(4):451-460. Rocke RD. .
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    135. Heuristic Search Algorithms for the Minimum Volume Ellipsoid. Journal of Computational and Graphical Statistics. 1993 Mar 1; 2(1):69-95. Woodruff WD, Rocke RD. .
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    136. On the Beta Transformation Family. Technometrics. 1993 Feb 1; 35(1):72-81. Rocke RD. .
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    137. Robustness and balance in the mixed model. Biometrics. 1991 Mar; 47(1):303-9. Rocke DM. PMID: 2049504.
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    138. On the cumulants of affine equivariant estimators in elliptical families. Journal of Multivariate Analysis. 1990 Nov 1; 35(2):203-222. Grübel GR, Rocke RD. .
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    139. Statistical design of ELISA protocols. J Immunol Methods. 1990 Sep 14; 132(2):247-54. Bunch DS, Rocke DM, Harrison RO. PMID: 2212680.
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    140. Bootstrap Bartlett Adjustment in Seemingly Unrelated Regression. Journal of the American Statistical Association. 1989 Jun 1; 84(406):598-601. Rocke RD. .
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    141. Tacit Bargaining and Arms Control. World Politics. 1987 Apr 1; 39(3):297-325. Downs DG, Rocke RD. .
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    142. The scale problem in robust regression M- estimates. Journal of Statistical Computation and Simulation. 1986 Mar 1; 24(1):47-69. Rocke RD, Shanno SD. .
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    143. Outlier resistance in small samples. Biometrika. 1986 Jan 1; 73(1):175-181. ROCKE RD. .
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    144. Arms Races and Cooperation. World Politics. 1985 Oct 1; 38(1):118-146. Downs DG, Rocke RD, Siverson SR. .
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    145. Theories of budgetary decisionmaking and revenue decline. Policy Sciences. 1984 Mar 1; 16(4):329-347. Downs DG, Rocke RD. .
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    146. On testing for bioequivalence. Biometrics. 1984 Mar; 40(1):225-30. Rocke DM. PMID: 6547355.
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    147. Designed experiments for classification problems. J Oper Res Soc. 1983 Nov; 34(11):1069-77. DOwns GW, Rocke DM. PMID: 10310357.
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    148. Robust statistical analysis of interlaboratory studies. Biometrika. 1983 Jan 1; 70(2):421-431. ROCKE RD. .
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    149. Inference for response-limited time-series models. Communication in Statistics- Theory and Methods. 1982 Jan 1; 11(22):2587-2596. Rocke RD. .
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    150. Complexity, interaction, and policy research. Policy Sciences. 1981 Jun 1; 13(3):281-295. Downs DG, Rocke RD. .
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    151. Estimating the variances of robust estimators of location: influence curve, jackknife and bootstrap. Communications in Statistics - Simulation and Computation. 1981 Jan 1; 10(3):221-248. Rocke RD, Downs DG. .
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    152. p-Groups with Abelian Centralizers. Proceedings of the London Mathematical Society. 1975 Jan 1; s3-30(1):55-75. Rocke RD. .
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