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Nicole Baumgarth

TitlePROF-SFT-VM
InstitutionUniversity of California Davis
DepartmentVM: CTR COMPARATIVE MEDICINE
AddressCA 95616
Phone530-754-5813
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Baumgarth N. A Hard(y) Look at B-1 Cell Development and Function. J Immunol. 2017 11 15; 199(10):3387-3394. PMID: 29109178.
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    2. Nguyen TTT, Graf BA, Randall TD, Baumgarth N. sIgM-FcµR Interactions Regulate Early B Cell Activation and Plasma Cell Development after Influenza Virus Infection. J Immunol. 2017 09 01; 199(5):1635-1646. PMID: 28747342.
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    3. Savage HP, Yenson VM, Sawhney SS, Mousseau BJ, Lund FE, Baumgarth N. Blimp-1-dependent and -independent natural antibody production by B-1 and B-1-derived plasma cells. J Exp Med. 2017 Sep 04; 214(9):2777-2794. PMID: 28698287.
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    4. Tracy KE, Baumgarth N. Borrelia burgdorferi Manipulates Innate and Adaptive Immunity to Establish Persistence in Rodent Reservoir Hosts. Front Immunol. 2017; 8:116. PMID: 28265270.
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    5. Nguyen TT, Kläsener K, Zürn C, Castillo PA, Brust-Mascher I, Imai DM, Bevins CL, Reardon C, Reth M, Baumgarth N. The IgM receptor FcµR limits tonic BCR signaling by regulating expression of the IgM BCR. Nat Immunol. 2017 03; 18(3):321-333. PMID: 28135254.
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    6. Baumgarth N. B-1 Cell Heterogeneity and the Regulation of Natural and Antigen-Induced IgM Production. Front Immunol. 2016; 7:324. PMID: 27667991; PMCID: PMC5016532.
    7. Nguyen TT, Baumgarth N. Innate B Cells Tell ILC How It's Done. Immunity. 2016 07 19; 45(1):8-10. PMID: 27438761.
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    8. Baumgarth N, Herzenberg LA. Richard R. (Randy) Hardy 1952-2016. Nat Immunol. 2016 07 19; 17(8):889. PMID: 27433999.
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    9. Nguyen TT, Baumgarth N. Natural IgM and the Development of B Cell-Mediated Autoimmune Diseases. Crit Rev Immunol. 2016; 36(2):163-177. PMID: 27910766.
      View in: PubMed
    10. Waffarn EE, Hastey CJ, Dixit N, Soo Choi Y, Cherry S, Kalinke U, Simon SI, Baumgarth N. Infection-induced type I interferons activate CD11b on B-1 cells for subsequent lymph node accumulation. Nat Commun. 2015 Nov 27; 6:8991. PMID: 26612263; PMCID: PMC4896500.
    11. Elsner RA, Hastey CJ, Olsen KJ, Baumgarth N. Suppression of Long-Lived Humoral Immunity Following Borrelia burgdorferi Infection. PLoS Pathog. 2015 Jul; 11(7):e1004976. PMID: 26136236; PMCID: PMC4489802.
    12. Savage HP, Baumgarth N. Characteristics of natural antibody-secreting cells. Ann N Y Acad Sci. 2015 Dec; 1362:132-42. PMID: 26104151.
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    13. Baumgarth N, Waffarn EE, Nguyen TT. Natural and induced B-1 cell immunity to infections raises questions of nature versus nurture. Ann N Y Acad Sci. 2015 Dec; 1362:188-99. PMID: 26060895; PMCID: PMC4881423 [Available on 12/01/16].
    14. Nguyen TT, Elsner RA, Baumgarth N. Natural IgM prevents autoimmunity by enforcing B cell central tolerance induction. J Immunol. 2015 Feb 15; 194(4):1489-502. PMID: 25595791; PMCID: PMC4324358.
    15. Elsner RA, Hastey CJ, Baumgarth N. CD4+ T cells promote antibody production but not sustained affinity maturation during Borrelia burgdorferi infection. Infect Immun. 2015 Jan; 83(1):48-56. PMID: 25312948; PMCID: PMC4288900.
    16. Oslund KL, Zhou X, Lee B, Zhu L, Duong T, Shih R, Baumgarth N, Hung LY, Wu R, Chen Y. Synergistic up-regulation of CXCL10 by virus and IFN ? in human airway epithelial cells. PLoS One. 2014; 9(7):e100978. PMID: 25033426; PMCID: PMC4102466.
    17. Hastey CJ, Ochoa J, Olsen KJ, Barthold SW, Baumgarth N. MyD88- and TRIF-independent induction of type I interferon drives naive B cell accumulation but not loss of lymph node architecture in Lyme disease. Infect Immun. 2014 Apr; 82(4):1548-58. PMID: 24452685; PMCID: PMC3993384.
    18. Yenson V, Baumgarth N. Purification and immune phenotyping of B-1 cells from body cavities of mice. Methods Mol Biol. 2014; 1190:17-34. PMID: 25015270.
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    19. Sckisel GD, Tietze JK, Zamora AE, Hsiao HH, Priest SO, Wilkins DE, Lanier LL, Blazar BR, Baumgarth N, Murphy WJ. Influenza infection results in local expansion of memory CD8(+) T cells with antigen non-specific phenotype and function. Clin Exp Immunol. 2014 Jan; 175(1):79-91. PMID: 23937663; PMCID: PMC3898557.
    20. Baumgarth N. How specific is too specific? B-cell responses to viral infections reveal the importance of breadth over depth. Immunol Rev. 2013 Sep; 255(1):82-94. PMID: 23947349; PMCID: PMC3748619.
    21. Priest SO, Baumgarth N. The role of innate signals in B cell immunity to influenza virus. Front Biosci (Schol Ed). 2013 Jan 01; 5:105-17. PMID: 23277039.
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    22. Baumgarth N. Innate-like B cells and their rules of engagement. Adv Exp Med Biol. 2013; 785:57-66. PMID: 23456838.
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    23. Martin ME, Dieter JA, Luo Z, Baumgarth N, Solnick JV. Predicting the outcome of infectious diseases: variability among inbred mice as a new and powerful tool for biomarker discovery. MBio. 2012 Oct 16; 3(5):e00199-12. PMID: 23073762; PMCID: PMC3470649.
    24. Hastey CJ, Elsner RA, Barthold SW, Baumgarth N. Delays and diversions mark the development of B cell responses to Borrelia burgdorferi infection. J Immunol. 2012 Jun 01; 188(11):5612-22. PMID: 22547698; PMCID: PMC3358496.
    25. Elsner RA, Ernst DN, Baumgarth N. Single and coexpression of CXCR4 and CXCR5 identifies CD4 T helper cells in distinct lymph node niches during influenza virus infection. J Virol. 2012 Jul; 86(13):7146-57. PMID: 22532671; PMCID: PMC3416343.
    26. Gardner MB, Baumgarth N, Fell A, McSorley SJ, Solnick JV, Bevins CL. Meeting report: a symposium on the evolution of common molecular pathways underlying innate immunity. Microbes Infect. 2012 Aug; 14(9):667-71. PMID: 22580093.
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    27. Squires RB, Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, Klem E, Scheuermann RH. Influenza research database: an integrated bioinformatics resource for influenza research and surveillance. Influenza Other Respir Viruses. 2012 Nov; 6(6):404-16. PMID: 22260278; PMCID: PMC3345175.
    28. Choi YS, Dieter JA, Rothaeusler K, Luo Z, Baumgarth N. B-1 cells in the bone marrow are a significant source of natural IgM. Eur J Immunol. 2012 Jan; 42(1):120-9. PMID: 22009734; PMCID: PMC3426357.
    29. Oslund KL, Baumgarth N. Influenza-induced innate immunity: regulators of viral replication, respiratory tract pathology & adaptive immunity. Future Virol. 2011 Aug; 6(8):951-962. PMID: 21909336.
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    30. Chang YJ, Kim HY, Albacker LA, Baumgarth N, McKenzie AN, Smith DE, Dekruyff RH, Umetsu DT. Innate lymphoid cells mediate influenza-induced airway hyper-reactivity independently of adaptive immunity. Nat Immunol. 2011 May 29; 12(7):631-8. PMID: 21623379; PMCID: PMC3417123.
    31. Tunev SS, Hastey CJ, Hodzic E, Feng S, Barthold SW, Baumgarth N. Lymphoadenopathy during lyme borreliosis is caused by spirochete migration-induced specific B cell activation. PLoS Pathog. 2011 May; 7(5):e1002066. PMID: 21637808; PMCID: PMC3102705.
    32. Li Y, Cao H, Dao N, Luo Z, Yu H, Chen Y, Xing Z, Baumgarth N, Cardona C, Chen X. High-throughput neuraminidase substrate specificity study of human and avian influenza A viruses. Virology. 2011 Jun 20; 415(1):12-9. PMID: 21501853; PMCID: PMC3114948.
    33. Waffarn EE, Baumgarth N. Protective B cell responses to flu--no fluke! J Immunol. 2011 Apr 01; 186(7):3823-9. PMID: 21422252; PMCID: PMC3154207.
    34. Chang YJ, Kim HY, Albacker LA, Lee HH, Baumgarth N, Akira S, Savage PB, Endo S, Yamamura T, Maaskant J, Kitano N, Singh A, Bhatt A, Besra GS, van den Elzen P, Appelmelk B, Franck RW, Chen G, DeKruyff RH, Shimamura M, Illarionov P, Umetsu DT. Influenza infection in suckling mice expands an NKT cell subset that protects against airway hyperreactivity. J Clin Invest. 2011 Jan; 121(1):57-69. PMID: 21157038; PMCID: PMC3007162.
    35. Baumgarth N. The double life of a B-1 cell: self-reactivity selects for protective effector functions. Nat Rev Immunol. 2011 Jan; 11(1):34-46. PMID: 21151033.
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    36. Albacker LA, Karisola P, Chang YJ, Umetsu SE, Zhou M, Akbari O, Kobayashi N, Baumgarth N, Freeman GJ, Umetsu DT, DeKruyff RH. TIM-4, a receptor for phosphatidylserine, controls adaptive immunity by regulating the removal of antigen-specific T cells. J Immunol. 2010 Dec 01; 185(11):6839-49. PMID: 21037090; PMCID: PMC3153437.
    37. Easlick J, Szubin R, Lantz S, Baumgarth N, Abel K. The early interferon alpha subtype response in infant macaques infected orally with SIV. J Acquir Immune Defic Syndr. 2010 Sep; 55(1):14-28. PMID: 20616742; PMCID: PMC2927738.
    38. Rothaeusler K, Baumgarth N. B-cell fate decisions following influenza virus infection. Eur J Immunol. 2010 Feb; 40(2):366-77. PMID: 19946883; PMCID: PMC2846450.
    39. Rau FC, Dieter J, Luo Z, Priest SO, Baumgarth N. B7-1/2 (CD80/CD86) direct signaling to B cells enhances IgG secretion. J Immunol. 2009 Dec 15; 183(12):7661-71. PMID: 19933871; PMCID: PMC2795108.
    40. Chang WL, Barry PA, Szubin R, Wang D, Baumgarth N. Human cytomegalovirus suppresses type I interferon secretion by plasmacytoid dendritic cells through its interleukin 10 homolog. Virology. 2009 Aug 01; 390(2):330-7. PMID: 19524994; PMCID: PMC2747589.
    41. Choi YS, Baumgarth N. Dual role for B-1a cells in immunity to influenza virus infection. J Exp Med. 2008 Dec 22; 205(13):3053-64. PMID: 19075288; PMCID: PMC2605232.
    42. Szubin R, Chang WL, Greasby T, Beckett L, Baumgarth N. Rigid interferon-alpha subtype responses of human plasmacytoid dendritic cells. J Interferon Cytokine Res. 2008 Dec; 28(12):749-63. PMID: 18937549; PMCID: PMC2956691.
    43. Baumgarth N. Nicole Baumgarth: tackling flu from a B cell angle. Interviewed by Amy Maxmem. J Exp Med. 2008 Oct 27; 205(11):2454-5. PMID: 18955572; PMCID: PMC2571919.
    44. Jensen KD, Su X, Shin S, Li L, Youssef S, Yamasaki S, Steinman L, Saito T, Locksley RM, Davis MM, Baumgarth N, Chien YH. Thymic selection determines gammadelta T cell effector fate: antigen-naive cells make interleukin-17 and antigen-experienced cells make interferon gamma. Immunity. 2008 Jul 18; 29(1):90-100. PMID: 18585064; PMCID: PMC2601709.
    45. McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Oxford C, Evans TG, Asmuth DM. Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part I: Panel design by an empiric approach. Cytometry A. 2008 May; 73(5):400-10. PMID: 18383316.
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    46. McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman JD, Nixon DF, Ottinger J, Li J, Beckett L, Shacklett BL, Evans TG, Asmuth DM. Nine-color flow cytometry for accurate measurement of T cell subsets and cytokine responses. Part II: Panel performance across different instrument platforms. Cytometry A. 2008 May; 73(5):411-20. PMID: 18383309.
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    47. Baumgarth N, Choi YS, Rothaeusler K, Yang Y, Herzenberg LA. B cell lineage contributions to antiviral host responses. Curr Top Microbiol Immunol. 2008; 319:41-61. PMID: 18080414.
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    48. Chang WL, Baumgarth N, Eberhardt MK, Lee CY, Baron CA, Gregg JP, Barry PA. Exposure of myeloid dendritic cells to exogenous or endogenous IL-10 during maturation determines their longevity. J Immunol. 2007 Jun 15; 178(12):7794-804. PMID: 17548617.
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    49. Rothaeusler K, Baumgarth N. Assessment of cell proliferation by 5-bromodeoxyuridine (BrdU) labeling for multicolor flow cytometry. Curr Protoc Cytom. 2007 Apr; Chapter 7:Unit7.31. PMID: 18770853.
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    50. Chang WL, Coro ES, Rau FC, Xiao Y, Erle DJ, Baumgarth N. Influenza virus infection causes global respiratory tract B cell response modulation via innate immune signals. J Immunol. 2007 Feb 01; 178(3):1457-67. PMID: 17237394.
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    51. Coro ES, Chang WL, Baumgarth N. Type I IFN receptor signals directly stimulate local B cells early following influenza virus infection. J Immunol. 2006 Apr 01; 176(7):4343-51. PMID: 16547272.
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    52. Rothaeusler K, Baumgarth N. Evaluation of intranuclear BrdU detection procedures for use in multicolor flow cytometry. Cytometry A. 2006 Apr; 69(4):249-59. PMID: 16538653; PMCID: PMC3013156.
    53. Doucett VP, Gerhard W, Owler K, Curry D, Brown L, Baumgarth N. Enumeration and characterization of virus-specific B cells by multicolor flow cytometry. J Immunol Methods. 2005 Aug; 303(1-2):40-52. PMID: 16045923.
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    54. Baumgarth N, Tung JW, Herzenberg LA. Inherent specificities in natural antibodies: a key to immune defense against pathogen invasion. Springer Semin Immunopathol. 2005 Mar; 26(4):347-62. PMID: 15633017.
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    55. Baumgarth N, Szubin R, Dolganov GM, Watnik MR, Greenspan D, Da Costa M, Palefsky JM, Jordan R, Roederer M, Greenspan JS. Highly tissue substructure-specific effects of human papilloma virus in mucosa of HIV-infected patients revealed by laser-dissection microscopy-assisted gene expression profiling. Am J Pathol. 2004 Sep; 165(3):707-18. PMID: 15331396; PMCID: PMC1618607.
    56. Chang WL, Baumgarth N, Yu D, Barry PA. Human cytomegalovirus-encoded interleukin-10 homolog inhibits maturation of dendritic cells and alters their functionality. J Virol. 2004 Aug; 78(16):8720-31. PMID: 15280480; PMCID: PMC479089.
    57. Baumgarth N, Bigos M. Optimization of emission optics for multicolor flow cytometry. Methods Cell Biol. 2004; 75:3-22. PMID: 15603420.
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    58. Baumgarth N. B-cell immunophenotyping. Methods Cell Biol. 2004; 75:643-62. PMID: 15603446.
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    59. Sangster MY, Riberdy JM, Gonzalez M, Topham DJ, Baumgarth N, Doherty PC. An early CD4+ T cell-dependent immunoglobulin A response to influenza infection in the absence of key cognate T-B interactions. J Exp Med. 2003 Oct 06; 198(7):1011-21. PMID: 14517272; PMCID: PMC2194225.
    60. Tsuji RF, Szczepanik M, Kawikova I, Paliwal V, Campos RA, Itakura A, Akahira-Azuma M, Baumgarth N, Herzenberg LA, Askenase PW. B cell-dependent T cell responses: IgM antibodies are required to elicit contact sensitivity. J Exp Med. 2002 Nov 18; 196(10):1277-90. PMID: 12438420; PMCID: PMC2193992.
    61. Lu LS, Tung J, Baumgarth N, Herman O, Gleimer M, Herzenberg LA, Herzenberg LA. Identification of a germ-line pro-B cell subset that distinguishes the fetal/neonatal from the adult B cell development pathway. Proc Natl Acad Sci U S A. 2002 Mar 05; 99(5):3007-12. PMID: 11867763; PMCID: PMC122463.
    62. Baumgarth N, Herman OC, Jager GC, Brown LE, Herzenberg LA, Chen J. B-1 and B-2 cell-derived immunoglobulin M antibodies are nonredundant components of the protective response to influenza virus infection. J Exp Med. 2000 Jul 17; 192(2):271-80. PMID: 10899913.
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